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sentences

Id Subject Object Predicate Lexical cue
T1 0-230 Sentence denotes Suppression of a cellular differentiation program by phorbol esters coincides with inhibition of binding of a cell-specific transcription factor (NF-E2) to an enhancer element required for expression of an erythroid-specific gene.
T2 231-399 Sentence denotes Induction by hemin increases, while induction with 12-O-tetradecanoylphorbol-13-acetate (TPA) represses, erythroid-specific gene expression in the human cell line K562.
T3 400-614 Sentence denotes We analyzed the effects of hemin or TPA induction on the binding and activity of transcription factors at a regulatory element found within the transcriptional regulatory sequences of many erythroid-specific genes.
T4 615-694 Sentence denotes TPA induction increases the binding of ubiquitous AP-1 factors to this element.
T5 695-820 Sentence denotes TPA induction inhibits the binding of the lineage limited transcription factor NF-E2 to this transcriptional control element.
T6 821-916 Sentence denotes Hemin induction of K562 cells does not facilitate the binding of NF-E2 to its recognition site.
T7 917-1031 Sentence denotes Hemin induction appears to nonspecifically increase the expression of transiently transfected genes in K562 cells.
T8 1032-1181 Sentence denotes Beyond this nonspecific increase in gene expression, hemin induction acts to increase the activity of the lineage limited transcription factor NF-E2.
T9 1182-1340 Sentence denotes The divergent effects of hemin and TPA on gene expression in K562 cells are mediated, in part, by their contrasting effects on the transcription factor NF-E2.
T1 0-230 Sentence denotes Suppression of a cellular differentiation program by phorbol esters coincides with inhibition of binding of a cell-specific transcription factor (NF-E2) to an enhancer element required for expression of an erythroid-specific gene.
T2 231-399 Sentence denotes Induction by hemin increases, while induction with 12-O-tetradecanoylphorbol-13-acetate (TPA) represses, erythroid-specific gene expression in the human cell line K562.
T3 400-614 Sentence denotes We analyzed the effects of hemin or TPA induction on the binding and activity of transcription factors at a regulatory element found within the transcriptional regulatory sequences of many erythroid-specific genes.
T4 615-694 Sentence denotes TPA induction increases the binding of ubiquitous AP-1 factors to this element.
T5 695-820 Sentence denotes TPA induction inhibits the binding of the lineage limited transcription factor NF-E2 to this transcriptional control element.
T6 821-916 Sentence denotes Hemin induction of K562 cells does not facilitate the binding of NF-E2 to its recognition site.
T7 917-1031 Sentence denotes Hemin induction appears to nonspecifically increase the expression of transiently transfected genes in K562 cells.
T8 1032-1181 Sentence denotes Beyond this nonspecific increase in gene expression, hemin induction acts to increase the activity of the lineage limited transcription factor NF-E2.
T9 1182-1340 Sentence denotes The divergent effects of hemin and TPA on gene expression in K562 cells are mediated, in part, by their contrasting effects on the transcription factor NF-E2.

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 110-144 protein denotes cell-specific transcription factor
T2 146-151 protein denotes NF-E2
T3 159-175 DNA denotes enhancer element
T4 206-229 DNA denotes erythroid-specific gene
T5 336-359 DNA denotes erythroid-specific gene
T6 378-398 cell_line denotes human cell line K562
T7 481-502 protein denotes transcription factors
T8 508-526 DNA denotes regulatory element
T9 544-580 DNA denotes transcriptional regulatory sequences
T10 589-613 DNA denotes erythroid-specific genes
T11 654-677 protein denotes ubiquitous AP-1 factors
T12 737-773 protein denotes lineage limited transcription factor
T13 774-779 protein denotes NF-E2
T14 788-819 DNA denotes transcriptional control element
T15 840-850 cell_line denotes K562 cells
T16 886-891 protein denotes NF-E2
T17 1020-1030 cell_line denotes K562 cells
T18 1085-1090 protein denotes hemin
T19 1138-1174 protein denotes lineage limited transcription factor
T20 1243-1253 cell_line denotes K562 cells
T21 1313-1333 protein denotes transcription factor
T22 1334-1339 protein denotes NF-E2

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-230 Sentence denotes Suppression of a cellular differentiation program by phorbol esters coincides with inhibition of binding of a cell-specific transcription factor (NF-E2) to an enhancer element required for expression of an erythroid-specific gene.
S2 231-399 Sentence denotes Induction by hemin increases, while induction with 12-O-tetradecanoylphorbol-13-acetate (TPA) represses, erythroid-specific gene expression in the human cell line K562.
S3 400-614 Sentence denotes We analyzed the effects of hemin or TPA induction on the binding and activity of transcription factors at a regulatory element found within the transcriptional regulatory sequences of many erythroid-specific genes.
S4 615-694 Sentence denotes TPA induction increases the binding of ubiquitous AP-1 factors to this element.
S5 695-820 Sentence denotes TPA induction inhibits the binding of the lineage limited transcription factor NF-E2 to this transcriptional control element.
S6 821-916 Sentence denotes Hemin induction of K562 cells does not facilitate the binding of NF-E2 to its recognition site.
S7 917-1031 Sentence denotes Hemin induction appears to nonspecifically increase the expression of transiently transfected genes in K562 cells.
S8 1032-1181 Sentence denotes Beyond this nonspecific increase in gene expression, hemin induction acts to increase the activity of the lineage limited transcription factor NF-E2.
S9 1182-1340 Sentence denotes The divergent effects of hemin and TPA on gene expression in K562 cells are mediated, in part, by their contrasting effects on the transcription factor NF-E2.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 108-152 NP denotes a cell-specific transcription factor (NF-E2)
C3 203-229 NP denotes an erythroid-specific gene
C2 189-229 NP denotes expression of an erythroid-specific gene
C5 244-249 NP denotes hemin
C4 231-249 NP denotes Induction by hemin
C7 282-324 NP denotes 12-O-tetradecanoylphorbol-13-acetate (TPA)
C6 267-324 NP denotes induction with 12-O-tetradecanoylphorbol-13-acetate (TPA)
C9 336-359 NP denotes erythroid-specific gene
C8 336-370 NP denotes erythroid-specific gene expression
C10 374-398 NP denotes the human cell line K562
C11 427-432 NP denotes hemin
C13 436-439 NP denotes TPA
C12 436-449 NP denotes TPA induction
C14 481-502 NP denotes transcription factors
C16 584-613 NP denotes many erythroid-specific genes
C15 506-613 NP denotes a regulatory element found within the transcriptional regulatory sequences of many erythroid-specific genes
C18 615-618 NP denotes TPA
C17 615-628 NP denotes TPA induction
C19 654-677 NP denotes ubiquitous AP-1 factors
C20 681-693 NP denotes this element
C22 695-698 NP denotes TPA
C21 695-708 NP denotes TPA induction
C23 733-779 NP denotes the lineage limited transcription factor NF-E2
C24 783-819 NP denotes this transcriptional control element
C26 821-826 NP denotes Hemin
C27 840-850 NP denotes K562 cells
C25 821-850 NP denotes Hemin induction of K562 cells
C28 886-891 NP denotes NF-E2
C29 895-898 NP denotes its
C31 917-922 NP denotes Hemin
C30 917-932 NP denotes Hemin induction
C41 1020-1030 NP denotes K562 cells
C33 1085-1090 NP denotes hemin
C32 1085-1100 NP denotes hemin induction
C34 1134-1180 NP denotes the lineage limited transcription factor NF-E2
C36 1207-1212 NP denotes hemin
C37 1217-1220 NP denotes TPA
C35 1207-1220 NP denotes hemin and TPA
C38 1243-1253 NP denotes K562 cells
C39 1280-1285 NP denotes their
C40 1309-1339 NP denotes the transcription factor NF-E2
R1 C9 C3 coref-ident erythroid-specific gene,an erythroid-specific gene
R2 C8 C2 coref-ident erythroid-specific gene expression,expression of an erythroid-specific gene
R3 C11 C5 coref-ident hemin,hemin
R4 C13 C7 coref-ident TPA,12-O-tetradecanoylphorbol-13-acetate (TPA)
R5 C12 C6 coref-ident TPA induction,induction with 12-O-tetradecanoylphorbol-13-acetate (TPA)
R6 C16 C9 coref-other many erythroid-specific genes,erythroid-specific gene
R7 C18 C13 coref-ident TPA,TPA
R8 C17 C12 coref-ident TPA induction,TPA induction
R9 C19 C14 coref-other ubiquitous AP-1 factors,transcription factors
R10 C20 C15 coref-other this element,a regulatory element found within the transcriptional regulatory sequences of many erythroid-specific genes
R11 C22 C18 coref-ident TPA,TPA
R12 C21 C17 coref-ident TPA induction,TPA induction
R13 C23 C1 coref-ident the lineage limited transcription factor NF-E2,a cell-specific transcription factor (NF-E2)
R14 C24 C20 coref-ident this transcriptional control element,this element
R15 C26 C11 coref-ident Hemin,hemin
R16 C27 C10 coref-other K562 cells,the human cell line K562
R17 C25 C4 coref-ident Hemin induction of K562 cells,Induction by hemin
R18 C28 C23 coref-ident NF-E2,the lineage limited transcription factor NF-E2
R19 C29 C28 coref-pron its,NF-E2
R20 C31 C26 coref-ident Hemin,Hemin
R21 C30 C25 coref-ident Hemin induction,Hemin induction of K562 cells
R22 C41 C27 coref-ident K562 cells,K562 cells
R23 C33 C31 coref-ident hemin,Hemin
R24 C32 C30 coref-ident hemin induction,Hemin induction
R25 C34 C28 coref-ident the lineage limited transcription factor NF-E2,NF-E2
R26 C36 C33 coref-ident hemin,hemin
R27 C37 C22 coref-ident TPA,TPA
R28 C38 C41 coref-ident K562 cells,K562 cells
R29 C39 C35 coref-pron their,hemin and TPA
R30 C40 C34 coref-ident the transcription factor NF-E2,the lineage limited transcription factor NF-E2

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 17-49 other_name denotes cellular differentiation program
T2 53-67 other_organic_compound denotes phorbol esters
T3 110-144 protein_family_or_group denotes cell-specific transcription factor
T4 146-151 protein_molecule denotes NF-E2
T5 159-175 DNA_domain_or_region denotes enhancer element
T6 206-229 DNA_domain_or_region denotes erythroid-specific gene
T7 282-318 other_organic_compound denotes 12-O-tetradecanoylphorbol-13-acetate
T8 320-323 other_organic_compound denotes TPA
T9 336-359 DNA_domain_or_region denotes erythroid-specific gene
T10 378-398 cell_line denotes human cell line K562
T11 436-439 other_organic_compound denotes TPA
T12 481-502 protein_family_or_group denotes transcription factors
T13 508-526 DNA_domain_or_region denotes regulatory element
T14 544-580 DNA_domain_or_region denotes transcriptional regulatory sequences
T15 589-613 DNA_family_or_group denotes erythroid-specific genes
T16 615-618 other_organic_compound denotes TPA
T17 654-677 protein_family_or_group denotes ubiquitous AP-1 factors
T18 695-698 other_organic_compound denotes TPA
T19 737-773 protein_family_or_group denotes lineage limited transcription factor
T20 774-779 protein_molecule denotes NF-E2
T21 788-819 DNA_molecule denotes transcriptional control element
T22 821-836 other_name denotes Hemin induction
T23 840-850 cell_line denotes K562 cells
T24 886-891 protein_molecule denotes NF-E2
T25 899-915 DNA_substructure denotes recognition site
T26 1020-1030 cell_line denotes K562 cells
T27 1085-1090 protein_molecule denotes hemin
T28 1138-1174 protein_family_or_group denotes lineage limited transcription factor
T29 1207-1212 other_organic_compound denotes hemin
T30 1217-1220 other_organic_compound denotes TPA
T31 1243-1253 cell_line denotes K562 cells
T32 1313-1333 protein_family_or_group denotes transcription factor
T33 1334-1339 protein_molecule denotes NF-E2

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 378-383 OrganismTaxon denotes human 9606