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PubMed:8419337 JSONTXT

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CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 107-113 Cell denotes T cell http://purl.obolibrary.org/obo/CL:0000084
T2 132-139 Cell denotes epsilon http://purl.obolibrary.org/obo/CL:0003025
T3 186-205 Cell denotes hematopoietic cells http://purl.obolibrary.org/obo/CL:0000988
T4 313-323 Cell denotes mast cells http://purl.obolibrary.org/obo/CL:0000097
T5 325-334 Cell denotes basophils http://purl.obolibrary.org/obo/CL:0000767
T6 336-352 Cell denotes Langerhans cells http://purl.obolibrary.org/obo/CL:0000453
T7 457-477 Cell denotes natural killer cells http://purl.obolibrary.org/obo/CL:0000623
T8 482-493 Cell denotes macrophages http://purl.obolibrary.org/obo/CL:0000235|http://purl.obolibrary.org/obo/CL:0000394
T10 511-517 Cell denotes T cell http://purl.obolibrary.org/obo/CL:0000084
T11 549-556 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T12 898-917 Cell denotes hematopoietic cells http://purl.obolibrary.org/obo/CL:0000988
T13 984-991 Cell denotes epsilon http://purl.obolibrary.org/obo/CL:0003025
T14 1185-1194 Cell denotes basophils http://purl.obolibrary.org/obo/CL:0000767
T15 1199-1206 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T16 1289-1298 Cell denotes basophils http://purl.obolibrary.org/obo/CL:0000767
T17 1303-1310 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T18 1346-1355 Cell denotes basophils http://purl.obolibrary.org/obo/CL:0000767
T19 1381-1388 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084

sentences

Id Subject Object Predicate Lexical cue
T1 0-124 Sentence denotes Involvement of Alu sequences in the cell-specific regulation of transcription of the gamma chain of Fc and T cell receptors.
T2 125-261 Sentence denotes The Fc epsilon RI-gamma chains are expressed in a variety of hematopoietic cells where they play a critical role in signal transduction.
T3 262-557 Sentence denotes They are part of the high affinity IgE receptor in mast cells, basophils, Langerhans cells, and possibly other cells; a component of the low affinity receptor for IgG (Fc gamma RIIIA or CD16) in natural killer cells and macrophages; and part of the T cell antigen receptor in subsets of T cells.
T4 558-719 Sentence denotes Here we have investigated the transcriptional regulation of the gamma chain gene by analyzing the 2.5-kilobase sequence upstream of the transcription start site.
T5 720-797 Sentence denotes This sequence contains a promoter specific to cells of hematopoietic lineage.
T6 798-1020 Sentence denotes However, the tissue specificity of this promoter is only partial because it is active in all of the hematopoietic cells tested here, regardless of whether they constitutively express Fc epsilon RI- gamma chain transcripts.
T7 1021-1125 Sentence denotes We have identified two adjacent cis-acting regulatory elements, both of which are part of an Alu repeat.
T8 1126-1207 Sentence denotes The first (-445/-366) is a positive element active in both basophils and T cells.
T9 1208-1389 Sentence denotes The second (-365/-264) binds to nuclear factors, which appear to be different in basophils and T cells, and acts as a negative element in basophils and as a positive one in T cells.
T10 1390-1516 Sentence denotes Thus, this Alu repeat (90% identical to Alu consensus sequences) has evolved to become both a positive and negative regulator.
T1 0-124 Sentence denotes Involvement of Alu sequences in the cell-specific regulation of transcription of the gamma chain of Fc and T cell receptors.
T2 125-261 Sentence denotes The Fc epsilon RI-gamma chains are expressed in a variety of hematopoietic cells where they play a critical role in signal transduction.
T3 262-557 Sentence denotes They are part of the high affinity IgE receptor in mast cells, basophils, Langerhans cells, and possibly other cells; a component of the low affinity receptor for IgG (Fc gamma RIIIA or CD16) in natural killer cells and macrophages; and part of the T cell antigen receptor in subsets of T cells.
T4 558-719 Sentence denotes Here we have investigated the transcriptional regulation of the gamma chain gene by analyzing the 2.5-kilobase sequence upstream of the transcription start site.
T5 720-797 Sentence denotes This sequence contains a promoter specific to cells of hematopoietic lineage.
T6 798-1020 Sentence denotes However, the tissue specificity of this promoter is only partial because it is active in all of the hematopoietic cells tested here, regardless of whether they constitutively express Fc epsilon RI- gamma chain transcripts.
T7 1021-1125 Sentence denotes We have identified two adjacent cis-acting regulatory elements, both of which are part of an Alu repeat.
T8 1126-1207 Sentence denotes The first (-445/-366) is a positive element active in both basophils and T cells.
T9 1208-1389 Sentence denotes The second (-365/-264) binds to nuclear factors, which appear to be different in basophils and T cells, and acts as a negative element in basophils and as a positive one in T cells.
T10 1390-1516 Sentence denotes Thus, this Alu repeat (90% identical to Alu consensus sequences) has evolved to become both a positive and negative regulator.

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 15-28 DNA denotes Alu sequences
T2 85-96 protein denotes gamma chain
T3 100-102 protein denotes Fc
T4 107-123 protein denotes T cell receptors
T5 129-155 protein denotes Fc epsilon RI-gamma chains
T6 186-205 cell_type denotes hematopoietic cells
T7 283-309 protein denotes high affinity IgE receptor
T8 313-323 cell_type denotes mast cells
T9 325-334 cell_type denotes basophils
T10 336-352 cell_type denotes Langerhans cells
T11 425-428 protein denotes IgG
T12 430-444 protein denotes Fc gamma RIIIA
T13 448-452 protein denotes CD16
T14 465-477 cell_type denotes killer cells
T15 482-493 cell_type denotes macrophages
T16 511-534 protein denotes T cell antigen receptor
T17 549-556 cell_type denotes T cells
T18 622-633 protein denotes gamma chain
T19 656-677 DNA denotes 2.5-kilobase sequence
T20 745-753 DNA denotes promoter
T21 766-796 cell_type denotes cells of hematopoietic lineage
T22 838-846 DNA denotes promoter
T23 898-917 cell_type denotes hematopoietic cells
T24 996-1007 protein denotes gamma chain
T25 1185-1194 cell_type denotes basophils
T26 1199-1206 cell_type denotes T cells
T27 1240-1255 protein denotes nuclear factors
T28 1289-1298 cell_type denotes basophils
T29 1303-1310 cell_type denotes T cells
T30 1346-1355 cell_type denotes basophils
T31 1381-1388 cell_type denotes T cells
T32 1401-1411 DNA denotes Alu repeat
T33 1430-1453 DNA denotes Alu consensus sequences

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-124 Sentence denotes Involvement of Alu sequences in the cell-specific regulation of transcription of the gamma chain of Fc and T cell receptors.
S2 125-261 Sentence denotes The Fc epsilon RI-gamma chains are expressed in a variety of hematopoietic cells where they play a critical role in signal transduction.
S3 262-557 Sentence denotes They are part of the high affinity IgE receptor in mast cells, basophils, Langerhans cells, and possibly other cells; a component of the low affinity receptor for IgG (Fc gamma RIIIA or CD16) in natural killer cells and macrophages; and part of the T cell antigen receptor in subsets of T cells.
S4 558-719 Sentence denotes Here we have investigated the transcriptional regulation of the gamma chain gene by analyzing the 2.5-kilobase sequence upstream of the transcription start site.
S5 720-797 Sentence denotes This sequence contains a promoter specific to cells of hematopoietic lineage.
S6 798-1020 Sentence denotes However, the tissue specificity of this promoter is only partial because it is active in all of the hematopoietic cells tested here, regardless of whether they constitutively express Fc epsilon RI- gamma chain transcripts.
S7 1021-1125 Sentence denotes We have identified two adjacent cis-acting regulatory elements, both of which are part of an Alu repeat.
S8 1126-1207 Sentence denotes The first (-445/-366) is a positive element active in both basophils and T cells.
S9 1208-1389 Sentence denotes The second (-365/-264) binds to nuclear factors, which appear to be different in basophils and T cells, and acts as a negative element in basophils and as a positive one in T cells.
S10 1390-1516 Sentence denotes Thus, this Alu repeat (90% identical to Alu consensus sequences) has evolved to become both a positive and negative regulator.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 15-28 NP denotes Alu sequences
C2 81-102 NP denotes the gamma chain of Fc
C3 125-155 NP denotes The Fc epsilon RI-gamma chains
C4 173-205 NP denotes a variety of hematopoietic cells
C5 206-211 NP denotes where
C6 212-216 NP denotes they
C7 262-266 NP denotes They
C8 549-556 NP denotes T cells
C9 652-718 NP denotes the 2.5-kilobase sequence upstream of the transcription start site
C10 720-733 NP denotes This sequence
C11 743-796 NP denotes a promoter specific to cells of hematopoietic lineage
C12 833-846 NP denotes this promoter
C13 871-873 NP denotes it
C14 894-929 NP denotes the hematopoietic cells tested here
C15 953-957 NP denotes they
C16 981-1007 NP denotes Fc epsilon RI- gamma chain
C17 1040-1083 NP denotes two adjacent cis-acting regulatory elements
C18 1093-1098 NP denotes which
C19 1111-1124 NP denotes an Alu repeat
C20 1126-1147 NP denotes The first (-445/-366)
C21 1185-1194 NP denotes basophils
C22 1199-1206 NP denotes T cells
C23 1208-1230 NP denotes The second (-365/-264)
C24 1240-1255 NP denotes nuclear factors
C25 1257-1262 NP denotes which
C26 1289-1298 NP denotes basophils
C27 1303-1310 NP denotes T cells
C28 1346-1355 NP denotes basophils
C29 1381-1388 NP denotes T cells
C31 1430-1453 NP denotes Alu consensus sequences
C30 1396-1454 NP denotes this Alu repeat (90% identical to Alu consensus sequences)
R1 C3 C2 coref-other The Fc epsilon RI-gamma chains,the gamma chain of Fc
R2 C5 C4 coref-relat where,a variety of hematopoietic cells
R3 C6 C3 coref-pron they,The Fc epsilon RI-gamma chains
R4 C7 C3 coref-pron They,The Fc epsilon RI-gamma chains
R5 C10 C9 coref-ident This sequence,the 2.5-kilobase sequence upstream of the transcription start site
R6 C12 C11 coref-ident this promoter,a promoter specific to cells of hematopoietic lineage
R7 C13 C12 coref-pron it,this promoter
R8 C14 C4 coref-other the hematopoietic cells tested here,a variety of hematopoietic cells
R9 C15 C14 coref-pron they,the hematopoietic cells tested here
R10 C16 C3 coref-ident Fc epsilon RI- gamma chain,The Fc epsilon RI-gamma chains
R11 C18 C17 coref-relat which,two adjacent cis-acting regulatory elements
R12 C20 C17 coref-other The first (-445/-366),two adjacent cis-acting regulatory elements
R13 C22 C8 coref-ident T cells,T cells
R14 C23 C17 coref-other The second (-365/-264),two adjacent cis-acting regulatory elements
R15 C25 C24 coref-relat which,nuclear factors
R16 C26 C21 coref-ident basophils,basophils
R17 C27 C22 coref-ident T cells,T cells
R18 C28 C26 coref-ident basophils,basophils
R19 C29 C27 coref-ident T cells,T cells
R20 C31 C1 coref-other Alu consensus sequences,Alu sequences
R21 C30 C19 coref-ident this Alu repeat (90% identical to Alu consensus sequences),an Alu repeat

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 15-28 DNA_domain_or_region denotes Alu sequences
T2 85-96 protein_domain_or_region denotes gamma chain
T3 100-102 protein_molecule denotes Fc
T4 107-123 protein_family_or_group denotes T cell receptors
T5 129-155 protein_domain_or_region denotes Fc epsilon RI-gamma chains
T6 186-205 cell_type denotes hematopoietic cells
T7 241-260 other_name denotes signal transduction
T8 283-309 protein_molecule denotes high affinity IgE receptor
T9 313-323 cell_type denotes mast cells
T10 325-334 cell_type denotes basophils
T11 336-352 cell_type denotes Langerhans cells
T12 425-428 protein_family_or_group denotes IgG
T13 430-444 protein_molecule denotes Fc gamma RIIIA
T14 448-452 protein_molecule denotes CD16
T15 465-477 cell_type denotes killer cells
T16 482-493 cell_type denotes macrophages
T17 511-534 protein_family_or_group denotes T cell antigen receptor
T18 549-556 cell_type denotes T cells
T19 622-633 protein_domain_or_region denotes gamma chain
T20 656-677 DNA_domain_or_region denotes 2.5-kilobase sequence
T21 694-718 DNA_substructure denotes transcription start site
T22 745-753 DNA_domain_or_region denotes promoter
T23 766-796 cell_type denotes cells of hematopoietic lineage
T24 838-846 DNA_domain_or_region denotes promoter
T25 898-917 cell_type denotes hematopoietic cells
T26 996-1007 protein_domain_or_region denotes gamma chain
T27 1185-1194 cell_type denotes basophils
T28 1199-1206 cell_type denotes T cells
T29 1240-1255 protein_family_or_group denotes nuclear factors
T30 1289-1298 cell_type denotes basophils
T31 1303-1310 cell_type denotes T cells
T32 1346-1355 cell_type denotes basophils
T33 1381-1388 cell_type denotes T cells
T34 1401-1411 DNA_domain_or_region denotes Alu repeat
T35 1430-1453 DNA_domain_or_region denotes Alu consensus sequences
T36 1484-1515 other_name denotes positive and negative regulator

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 107-113 Body_part denotes T cell http://purl.obolibrary.org/obo/CL_0000084
T2 186-205 Body_part denotes hematopoietic cells http://purl.obolibrary.org/obo/CL_0000988
T3 336-352 Body_part denotes Langerhans cells http://purl.obolibrary.org/obo/CL_0000453
T4 482-493 Body_part denotes macrophages http://purl.obolibrary.org/obo/CL_0000235
T5 511-517 Body_part denotes T cell http://purl.obolibrary.org/obo/CL_0000084
T6 811-817 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T7 898-917 Body_part denotes hematopoietic cells http://purl.obolibrary.org/obo/CL_0000988