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PubMed:8387893 JSONTXT

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CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 487-496 Cell denotes Thymocyte http://purl.obolibrary.org/obo/CL:0000893
T2 513-523 Cell denotes lymphocyte http://purl.obolibrary.org/obo/CL:0000542
T3 600-607 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T4 726-739 Cell denotes T lymphocytes http://purl.obolibrary.org/obo/CL:0000084

Inflammaging

Id Subject Object Predicate Lexical cue
T1 0-136 Sentence denotes Mice deficient for the 55 kd tumor necrosis factor receptor are resistant to endotoxic shock, yet succumb to L. monocytogenes infection.
T2 137-294 Sentence denotes The multiple biological activities of tumor necrosis factor (TNF) are mediated by two distinct cell surface receptors of 55 kd (TNFRp55) and 75 kd (TNFRp75).
T3 295-363 Sentence denotes Using gene targeting, we generated a TNFRp55-deficient mouse strain.
T4 364-486 Sentence denotes Cells from TNFRp55-/-mutant mice lack expression of TNFRp55 but display normal numbers of high affinity TNFRp75 molecules.
T5 487-624 Sentence denotes Thymocyte development and lymphocyte populations are unaltered, and clonal deletion of potentially self-reactive T cells is not impaired.
T6 625-768 Sentence denotes However, TNF signaling is largely abolished, as judged by the failure of TNF to induce NF-kappa B in T lymphocytes from TNFRp55-deficient mice.
T7 769-896 Sentence denotes The loss of TNFRp55 function renders mice resistant to lethal dosages of either lipopolysaccharides or S. aureus enterotoxin B.
T8 897-1014 Sentence denotes In contrast, TNFRp55-deficient mice are severely impaired to clear L. monocytogenes and readily succumb to infection.
T9 1015-1132 Sentence denotes Thus, the 55 kd TNFR plays a decisive role in the host's defense against microorganisms and their pathogenic factors.
T1 0-136 Sentence denotes Mice deficient for the 55 kd tumor necrosis factor receptor are resistant to endotoxic shock, yet succumb to L. monocytogenes infection.
T2 137-294 Sentence denotes The multiple biological activities of tumor necrosis factor (TNF) are mediated by two distinct cell surface receptors of 55 kd (TNFRp55) and 75 kd (TNFRp75).
T3 295-363 Sentence denotes Using gene targeting, we generated a TNFRp55-deficient mouse strain.
T4 364-486 Sentence denotes Cells from TNFRp55-/-mutant mice lack expression of TNFRp55 but display normal numbers of high affinity TNFRp75 molecules.
T5 487-624 Sentence denotes Thymocyte development and lymphocyte populations are unaltered, and clonal deletion of potentially self-reactive T cells is not impaired.
T6 625-768 Sentence denotes However, TNF signaling is largely abolished, as judged by the failure of TNF to induce NF-kappa B in T lymphocytes from TNFRp55-deficient mice.
T7 769-896 Sentence denotes The loss of TNFRp55 function renders mice resistant to lethal dosages of either lipopolysaccharides or S. aureus enterotoxin B.
T8 897-1014 Sentence denotes In contrast, TNFRp55-deficient mice are severely impaired to clear L. monocytogenes and readily succumb to infection.
T9 1015-1132 Sentence denotes Thus, the 55 kd TNFR plays a decisive role in the host's defense against microorganisms and their pathogenic factors.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 29-50 gene:7124 denotes tumor necrosis factor
T1 26-28 disease:C0026691 denotes kd
R1 T0 T1 associated_with tumor necrosis factor,kd

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 23-59 protein denotes 55 kd tumor necrosis factor receptor
T2 175-196 protein denotes tumor necrosis factor
T3 198-201 protein denotes TNF
T4 232-254 protein denotes cell surface receptors
T5 258-263 protein denotes 55 kd
T6 265-272 protein denotes TNFRp55
T7 278-283 protein denotes 75 kd
T8 285-292 protein denotes TNFRp75
T9 332-339 protein denotes TNFRp55
T10 416-423 protein denotes TNFRp55
T11 454-485 protein denotes high affinity TNFRp75 molecules
T12 487-496 cell_type denotes Thymocyte
T13 513-535 cell_type denotes lymphocyte populations
T14 586-607 cell_type denotes self-reactive T cells
T15 634-637 protein denotes TNF
T16 698-701 protein denotes TNF
T17 712-722 protein denotes NF-kappa B
T18 726-739 cell_type denotes T lymphocytes
T19 745-752 protein denotes TNFRp55
T20 781-788 protein denotes TNFRp55
T21 872-895 protein denotes S. aureus enterotoxin B
T22 1025-1035 protein denotes 55 kd TNFR

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-136 Sentence denotes Mice deficient for the 55 kd tumor necrosis factor receptor are resistant to endotoxic shock, yet succumb to L. monocytogenes infection.
S2 137-294 Sentence denotes The multiple biological activities of tumor necrosis factor (TNF) are mediated by two distinct cell surface receptors of 55 kd (TNFRp55) and 75 kd (TNFRp75).
S3 295-363 Sentence denotes Using gene targeting, we generated a TNFRp55-deficient mouse strain.
S4 364-486 Sentence denotes Cells from TNFRp55-/-mutant mice lack expression of TNFRp55 but display normal numbers of high affinity TNFRp75 molecules.
S5 487-624 Sentence denotes Thymocyte development and lymphocyte populations are unaltered, and clonal deletion of potentially self-reactive T cells is not impaired.
S6 625-768 Sentence denotes However, TNF signaling is largely abolished, as judged by the failure of TNF to induce NF-kappa B in T lymphocytes from TNFRp55-deficient mice.
S7 769-896 Sentence denotes The loss of TNFRp55 function renders mice resistant to lethal dosages of either lipopolysaccharides or S. aureus enterotoxin B.
S8 897-1014 Sentence denotes In contrast, TNFRp55-deficient mice are severely impaired to clear L. monocytogenes and readily succumb to infection.
S9 1015-1132 Sentence denotes Thus, the 55 kd TNFR plays a decisive role in the host's defense against microorganisms and their pathogenic factors.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 19-59 NP denotes the 55 kd tumor necrosis factor receptor
C1 0-59 NP denotes Mice deficient for the 55 kd tumor necrosis factor receptor
C3 175-202 NP denotes tumor necrosis factor (TNF)
C4 219-273 NP denotes two distinct cell surface receptors of 55 kd (TNFRp55)
C5 375-383 NP denotes TNFRp55-
C6 416-423 NP denotes TNFRp55
C7 698-701 NP denotes TNF
C8 745-767 NP denotes TNFRp55-deficient mice
C9 910-932 NP denotes TNFRp55-deficient mice
C10 1021-1035 NP denotes the 55 kd TNFR
C11 1088-1102 NP denotes microorganisms
C12 1107-1112 NP denotes their
R1 C4 C2 coref-ident two distinct cell surface receptors of 55 kd (TNFRp55),the 55 kd tumor necrosis factor receptor
R2 C5 C2 coref-ident TNFRp55-,the 55 kd tumor necrosis factor receptor
R3 C6 C5 coref-ident TNFRp55,TNFRp55-
R4 C7 C3 coref-ident TNF,tumor necrosis factor (TNF)
R5 C8 C1 coref-ident TNFRp55-deficient mice,Mice deficient for the 55 kd tumor necrosis factor receptor
R6 C9 C8 coref-ident TNFRp55-deficient mice,TNFRp55-deficient mice
R7 C10 C6 coref-ident the 55 kd TNFR,TNFRp55
R8 C12 C11 coref-pron their,microorganisms

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-4 multi_cell denotes Mice
T2 23-59 protein_molecule denotes 55 kd tumor necrosis factor receptor
T3 77-92 other_name denotes endotoxic shock
T4 109-125 mono_cell denotes L. monocytogenes
T5 175-196 protein_molecule denotes tumor necrosis factor
T6 198-201 protein_molecule denotes TNF
T7 232-254 protein_family_or_group denotes cell surface receptors
T8 258-263 protein_molecule denotes 55 kd
T9 265-272 protein_molecule denotes TNFRp55
T10 278-283 protein_molecule denotes 75 kd
T11 285-292 protein_molecule denotes TNFRp75
T12 332-339 protein_molecule denotes TNFRp55
T13 375-396 other_artificial_source denotes TNFRp55-/-mutant mice
T14 416-423 protein_molecule denotes TNFRp55
T15 454-485 protein_molecule denotes high affinity TNFRp75 molecules
T16 487-496 cell_type denotes Thymocyte
T17 513-535 cell_type denotes lymphocyte populations
T18 586-599 cell_type denotes self-reactive
T19 600-607 cell_type denotes T cells
T20 634-637 protein_molecule denotes TNF
T21 698-701 protein_molecule denotes TNF
T22 712-722 protein_molecule denotes NF-kappa B
T23 726-739 cell_type denotes T lymphocytes
T24 745-752 protein_molecule denotes TNFRp55
T25 781-788 protein_molecule denotes TNFRp55
T26 806-810 multi_cell denotes mice
T27 849-868 lipid denotes lipopolysaccharides
T28 872-881 mono_cell denotes S. aureus
T29 928-932 multi_cell denotes mice
T30 964-980 mono_cell denotes L. monocytogenes
T31 1025-1035 protein_molecule denotes 55 kd TNFR
T32 1088-1102 mono_cell denotes microorganisms
T33 1113-1131 other_organic_compound denotes pathogenic factors

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 29-34 Phenotype denotes tumor HP:0002664
T2 87-92 Phenotype denotes shock HP:0031273
T3 175-180 Phenotype denotes tumor HP:0002664

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 29-34 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T2 126-135 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T3 175-180 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T4 1004-1013 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 0-4 OrganismTaxon denotes Mice 10088
T2 350-355 OrganismTaxon denotes mouse 10088|10090
T4 392-396 OrganismTaxon denotes mice 10088
T5 763-767 OrganismTaxon denotes mice 10088
T6 806-810 OrganismTaxon denotes mice 10088
T7 928-932 OrganismTaxon denotes mice 10088

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 487-496 Body_part denotes Thymocyte http://purl.obolibrary.org/obo/CL_0000893
T2 513-523 Body_part denotes lymphocyte http://purl.obolibrary.org/obo/CL_0000542
T3 726-739 Body_part denotes T lymphocytes http://purl.obolibrary.org/obo/CL_0000084