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sentences

Id Subject Object Predicate Lexical cue
T1 0-252 Sentence denotes Use of transgenic mice to map cis-acting elements in the liver fatty acid-binding protein gene (Fabpl) that regulate its cell lineage-specific, differentiation-dependent, and spatial patterns of expression in the gut epithelium and in the liver acinus.
T2 253-395 Sentence denotes Axial pattern formation is sustained in the mammalian gut epithelium despite rapid and continuous renewal of its four principal cell lineages.
T3 396-742 Sentence denotes The mouse and rat liver fatty acid-binding protein (L-FABP) genes (Fabpl) represent an excellent model for understanding the mechanisms that determine differentiation-dependent, cell lineage-specific, and distinct regional patterns of expression along the crypt-to-villus and duodenal-to-ileal axes of the gut, as well as within the liver acinus.
T4 743-859 Sentence denotes We have used transgenic mice to map cis-acting elements in rat Fabpl that control these patterns of gene expression.
T5 860-1059 Sentence denotes Seven transgenes were analyzed, representing sequential deletions of the 5'-nontranscribed domain of Fabpl linked to the human growth hormone (hGH) gene beginning at its nucleotide +3 (L-FABP/hGH+3).
T6 1060-1264 Sentence denotes Several pedigrees of mice containing each one of the L-FABP/hGH+3 transgenes were examined at the end of their 8th and 20th weeks of postnatal life using immunocytochemical and RNA hybridization analyses.
T7 1265-1576 Sentence denotes A remarkably compact sequence spanning nucleotides -132 to +21 of Fabpl is sufficient to establish and maintain a distribution of reporter mRNA and protein in villus-associated enterocytes located along the duodenal-to-ileal axis of the gut that resembles the pattern of expression of the endogenous Fabpl gene.
T8 1577-1775 Sentence denotes L-FABP-132 to +21/hGH+3 is also expressed in surface and pit mucous cells of gastric units and in enterocytes located in the colonic homologs of small intestinal villi, the surface epithelial cuffs.
T9 1776-2011 Sentence denotes This pattern of transgene expression in the stomach and colon recapitulates that of the intact endogenous donor rat Fabpl but not that of mouse Fabpl, which is silent in these proximal and distal segments of the gastrointestinal tract.
T10 2012-2434 Sentence denotes Analysis of mice containing L-FABP-4000 to +21/hGH+3, L-FABP-1600 to +21/hGH+3, L-FABP-596 to +21/hGH+3, L-FABP-246 to +21/hGH+3, and L-FABP-186 to +21/hGH+3 indicate that Fabpl's cephalocaudal gradient is influenced by cis-acting suppressors of cecal and colonic expression located between nucleotides -4000 and -1600 and by cis-acting activators of cecal and colonic expression located between nucleotides -597 and -351.
T11 2435-2569 Sentence denotes L-FABP-132 to +21/hGH+3 is precociously activated in proliferating and nonproliferating epithelial cells located in intestinal crypts.
T12 2570-2860 Sentence denotes The suppressor(s) of L-FABP accumulation in crypt epithelial cell populations are not represented between nucleotides -4000 and +21, indicating that different cis-acting sequences regulate regional and differentiation-dependent patterns of Fabpl expression.(ABSTRACT TRUNCATED AT 400 WORDS)
T1 0-252 Sentence denotes Use of transgenic mice to map cis-acting elements in the liver fatty acid-binding protein gene (Fabpl) that regulate its cell lineage-specific, differentiation-dependent, and spatial patterns of expression in the gut epithelium and in the liver acinus.
T2 253-395 Sentence denotes Axial pattern formation is sustained in the mammalian gut epithelium despite rapid and continuous renewal of its four principal cell lineages.
T3 396-742 Sentence denotes The mouse and rat liver fatty acid-binding protein (L-FABP) genes (Fabpl) represent an excellent model for understanding the mechanisms that determine differentiation-dependent, cell lineage-specific, and distinct regional patterns of expression along the crypt-to-villus and duodenal-to-ileal axes of the gut, as well as within the liver acinus.
T4 743-859 Sentence denotes We have used transgenic mice to map cis-acting elements in rat Fabpl that control these patterns of gene expression.
T5 860-1059 Sentence denotes Seven transgenes were analyzed, representing sequential deletions of the 5'-nontranscribed domain of Fabpl linked to the human growth hormone (hGH) gene beginning at its nucleotide +3 (L-FABP/hGH+3).
T6 1060-1264 Sentence denotes Several pedigrees of mice containing each one of the L-FABP/hGH+3 transgenes were examined at the end of their 8th and 20th weeks of postnatal life using immunocytochemical and RNA hybridization analyses.
T7 1265-1576 Sentence denotes A remarkably compact sequence spanning nucleotides -132 to +21 of Fabpl is sufficient to establish and maintain a distribution of reporter mRNA and protein in villus-associated enterocytes located along the duodenal-to-ileal axis of the gut that resembles the pattern of expression of the endogenous Fabpl gene.
T8 1577-1775 Sentence denotes L-FABP-132 to +21/hGH+3 is also expressed in surface and pit mucous cells of gastric units and in enterocytes located in the colonic homologs of small intestinal villi, the surface epithelial cuffs.
T9 1776-2011 Sentence denotes This pattern of transgene expression in the stomach and colon recapitulates that of the intact endogenous donor rat Fabpl but not that of mouse Fabpl, which is silent in these proximal and distal segments of the gastrointestinal tract.
T10 2012-2434 Sentence denotes Analysis of mice containing L-FABP-4000 to +21/hGH+3, L-FABP-1600 to +21/hGH+3, L-FABP-596 to +21/hGH+3, L-FABP-246 to +21/hGH+3, and L-FABP-186 to +21/hGH+3 indicate that Fabpl's cephalocaudal gradient is influenced by cis-acting suppressors of cecal and colonic expression located between nucleotides -4000 and -1600 and by cis-acting activators of cecal and colonic expression located between nucleotides -597 and -351.
T11 2435-2569 Sentence denotes L-FABP-132 to +21/hGH+3 is precociously activated in proliferating and nonproliferating epithelial cells located in intestinal crypts.
T12 2570-2860 Sentence denotes The suppressor(s) of L-FABP accumulation in crypt epithelial cell populations are not represented between nucleotides -4000 and +21, indicating that different cis-acting sequences regulate regional and differentiation-dependent patterns of Fabpl expression.(ABSTRACT TRUNCATED AT 400 WORDS)

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 57-62 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver
T2 213-216 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
T3 239-244 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver
T4 307-310 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
T5 414-419 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver
T6 702-705 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
T7 729-734 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver
T8 1502-1505 http://purl.obolibrary.org/obo/MAT_0000043 denotes gut
T9 1702-1709 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonic
T10 1722-1738 http://purl.obolibrary.org/obo/MAT_0000047 denotes small intestinal
T11 1820-1827 http://purl.obolibrary.org/obo/MAT_0000051 denotes stomach
T12 1832-1837 http://purl.obolibrary.org/obo/MAT_0000526 denotes colon
T13 1952-1960 http://purl.obolibrary.org/obo/MAT_0000491 denotes proximal
T14 2268-2275 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonic
T15 2373-2380 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonic
T16 2551-2561 http://purl.obolibrary.org/obo/MAT_0000043 denotes intestinal

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 18-22 OrganismTaxon denotes mice 10088
T2 400-405 OrganismTaxon denotes mouse 10088|10090
T4 410-413 OrganismTaxon denotes rat 10114|10116
T6 767-771 OrganismTaxon denotes mice 10088
T7 802-805 OrganismTaxon denotes rat 10114|10116
T9 981-986 OrganismTaxon denotes human 9606
T10 1081-1085 OrganismTaxon denotes mice 10088
T11 1888-1891 OrganismTaxon denotes rat 10114|10116
T13 1914-1919 OrganismTaxon denotes mouse 10088|10090
T15 2024-2028 OrganismTaxon denotes mice 10088

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 57-62 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T2 213-227 Body_part denotes gut epithelium http://purl.obolibrary.org/obo/UBERON_0003929
T3 239-251 Body_part denotes liver acinus http://purl.obolibrary.org/obo/UBERON_0001172
T4 307-321 Body_part denotes gut epithelium http://purl.obolibrary.org/obo/UBERON_0003929
T5 414-419 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T6 661-667 Body_part denotes villus http://purl.obolibrary.org/obo/UBERON_0001213
T7 702-705 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907
T10 729-741 Body_part denotes liver acinus http://purl.obolibrary.org/obo/UBERON_0001172
T11 1424-1430 Body_part denotes villus http://purl.obolibrary.org/obo/UBERON_0001213
T12 1490-1494 Body_part denotes axis http://purl.obolibrary.org/obo/UBERON_0001093
T13 1502-1505 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907
T16 1634-1637 Body_part denotes pit http://purl.obolibrary.org/obo/UBERON_0016566
T17 1638-1650 Body_part denotes mucous cells http://purl.obolibrary.org/obo/CL_0000319
T18 1728-1744 Body_part denotes intestinal villi http://purl.obolibrary.org/obo/UBERON_0001213
T19 1820-1827 Body_part denotes stomach http://purl.obolibrary.org/obo/UBERON_0000945
T20 1832-1837 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T21 1972-1980 Body_part denotes segments http://purl.obolibrary.org/obo/UBERON_0000914
T22 1988-2010 Body_part denotes gastrointestinal tract http://purl.obolibrary.org/obo/UBERON_0005409
T23 2523-2539 Body_part denotes epithelial cells http://purl.obolibrary.org/obo/CL_0000066
T24 2551-2568 Body_part denotes intestinal crypts http://purl.obolibrary.org/obo/UBERON_0001983
T25 2620-2635 Body_part denotes epithelial cell http://purl.obolibrary.org/obo/CL_0000066

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 57-62 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T2 213-216 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T3 239-244 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T4 307-310 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T5 414-419 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T6 702-705 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T7 729-734 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T8 1502-1505 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T9 1702-1709 Body_part denotes colonic http://purl.obolibrary.org/obo/MAT_0000526
T10 1722-1738 Body_part denotes small intestinal http://purl.obolibrary.org/obo/MAT_0000047
T11 1820-1827 Body_part denotes stomach http://purl.obolibrary.org/obo/MAT_0000051
T12 1832-1837 Body_part denotes colon http://purl.obolibrary.org/obo/MAT_0000526
T13 1952-1960 Body_part denotes proximal http://purl.obolibrary.org/obo/MAT_0000491
T14 2268-2275 Body_part denotes colonic http://purl.obolibrary.org/obo/MAT_0000526
T15 2373-2380 Body_part denotes colonic http://purl.obolibrary.org/obo/MAT_0000526
T16 2551-2561 Body_part denotes intestinal http://purl.obolibrary.org/obo/MAT_0000043

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 1442-1453 Cell denotes enterocytes http://purl.obolibrary.org/obo/CL:0000584
T2 1638-1650 Cell denotes mucous cells http://purl.obolibrary.org/obo/CL:0000319
T3 1675-1686 Cell denotes enterocytes http://purl.obolibrary.org/obo/CL:0000584
T4 2523-2539 Cell denotes epithelial cells http://purl.obolibrary.org/obo/CL:0000066
T5 2620-2635 Cell denotes epithelial cell http://purl.obolibrary.org/obo/CL:0000066