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PubMed:8137243 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 33-55 protein denotes nuclear factor kappa B
T2 87-102 protein denotes I kappa B alpha
T3 141-156 cell_type denotes mammalian cells
T4 184-219 protein denotes transcriptional regulatory proteins
T5 228-250 protein denotes nuclear factor kappa B
T6 252-262 protein denotes NF-kappa B
T7 292-312 DNA denotes early response genes
T8 394-409 protein denotes I kappa B alpha
T9 433-443 protein denotes NF-kappa B
T10 491-514 DNA denotes reporter gene construct
T11 530-558 DNA denotes NF-kappa B DNA binding sites
T12 595-610 protein denotes tyrosine kinase
T13 630-654 DNA denotes dominant negative allele
T14 658-665 DNA denotes c-Raf-1
T15 667-674 protein denotes Raf 301
T16 686-701 protein denotes I kappa B alpha
T17 715-725 protein denotes NF-kappa B
T18 758-785 DNA denotes kappa B reporter constructs
T19 877-892 protein denotes I kappa B alpha
T20 898-908 protein denotes NF-kappa B
T21 943-958 protein denotes I kappa B alpha
T22 1147-1162 protein denotes I kappa B alpha
T23 1173-1188 protein denotes I kappa B alpha
T24 1205-1215 protein denotes NF-kappa B
T25 1262-1272 protein denotes NF-kappa B
T26 1310-1331 protein denotes tumor necrosis factor
T27 1401-1416 protein denotes I kappa B alpha
T28 1521-1536 protein denotes I kappa B alpha
T29 1635-1645 protein denotes NF-kappa B

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-7 NP denotes Hypoxia
C2 15-55 NP denotes the activation of nuclear factor kappa B
C3 87-102 NP denotes I kappa B alpha
C4 228-263 NP denotes nuclear factor kappa B (NF-kappa B)
C5 364-382 NP denotes hypoxia (0.02% O2)
C6 394-421 NP denotes I kappa B alpha degradation
C7 470-514 NP denotes transactivation of a reporter gene construct
C8 686-713 NP denotes I kappa B alpha degradation
C9 715-733 NP denotes NF-kappa B binding
C10 739-785 NP denotes transactivation of kappa B reporter constructs
C11 789-796 NP denotes hypoxia
C12 877-892 NP denotes I kappa B alpha
C13 898-919 NP denotes NF-kappa B activation
C14 943-958 NP denotes I kappa B alpha
C15 982-998 NP denotes hypoxic exposure
C17 1014-1017 NP denotes its
C16 1014-1049 NP denotes its tyrosine phosphorylation status
C18 1067-1083 NP denotes hypoxic exposure
C19 1147-1162 NP denotes I kappa B alpha
C20 1173-1200 NP denotes I kappa B alpha degradation
C21 1205-1223 NP denotes NF-kappa B binding
C22 1262-1272 NP denotes NF-kappa B
C24 1401-1416 NP denotes I kappa B alpha
C23 1362-1416 NP denotes the tyrosine phosphorylation status of I kappa B alpha
C25 1521-1536 NP denotes I kappa B alpha
C26 1544-1551 NP denotes hypoxia
C27 1555-1581 NP denotes an important proximal step
C28 1582-1587 NP denotes which
C29 1597-1600 NP denotes its
C30 1635-1645 NP denotes NF-kappa B
R1 C5 C1 coref-ident hypoxia (0.02% O2),Hypoxia
R2 C8 C6 coref-ident I kappa B alpha degradation,I kappa B alpha degradation
R3 C10 C7 coref-ident transactivation of kappa B reporter constructs,transactivation of a reporter gene construct
R4 C11 C5 coref-ident hypoxia,hypoxia (0.02% O2)
R5 C12 C3 coref-ident I kappa B alpha,I kappa B alpha
R6 C13 C2 coref-ident NF-kappa B activation,the activation of nuclear factor kappa B
R7 C14 C12 coref-ident I kappa B alpha,I kappa B alpha
R8 C16 C14 coref-pron its tyrosine phosphorylation status,I kappa B alpha
R9 C18 C15 coref-ident hypoxic exposure,hypoxic exposure
R10 C19 C14 coref-ident I kappa B alpha,I kappa B alpha
R11 C20 C8 coref-ident I kappa B alpha degradation,I kappa B alpha degradation
R12 C21 C9 coref-ident NF-kappa B binding,NF-kappa B binding
R13 C22 C4 coref-ident NF-kappa B,nuclear factor kappa B (NF-kappa B)
R14 C24 C19 coref-ident I kappa B alpha,I kappa B alpha
R15 C23 C17 coref-ident the tyrosine phosphorylation status of I kappa B alpha,its
R16 C25 C24 coref-ident I kappa B alpha,I kappa B alpha
R17 C26 C11 coref-ident hypoxia,hypoxia
R18 C28 C27 coref-ident which,an important proximal step
R19 C29 C25 coref-pron its,I kappa B alpha
R20 C30 C22 coref-ident NF-kappa B,NF-kappa B

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-124 Sentence denotes Hypoxia causes the activation of nuclear factor kappa B through the phosphorylation of I kappa B alpha on tyrosine residues.
S2 125-313 Sentence denotes The response of mammalian cells to stress is controlled by transcriptional regulatory proteins such as nuclear factor kappa B (NF-kappa B) to induce a wide variety of early response genes.
S3 314-559 Sentence denotes In this report, we show that exposure of cells to hypoxia (0.02% O2) results in I kappa B alpha degradation, increased NF-kappa B DNA binding activity, and transactivation of a reporter gene construct containing two NF-kappa B DNA binding sites.
S4 560-797 Sentence denotes Pretreatment of cells with protein tyrosine kinase inhibitors and the dominant negative allele of c-Raf-1 (Raf 301) inhibited I kappa B alpha degradation, NF-kappa B binding, and transactivation of kappa B reporter constructs by hypoxia.
S5 798-1084 Sentence denotes To demonstrate a direct link between changes in the phosphorylation pattern of I kappa B alpha with NF-kappa B activation, we immunoprecipitated I kappa B alpha after varying times of hypoxic exposure and found that its tyrosine phosphorylation status increased during hypoxic exposure.
S6 1085-1224 Sentence denotes Inhibition of the transfer of tyrosine phosphoryl groups onto I kappa B alpha prevented I kappa B alpha degradation and NF-kappa B binding.
S7 1225-1465 Sentence denotes In comparison to other activators of NF-kappa B such as phorbol myristate acetate or tumor necrosis factor, we did not detect changes in the tyrosine phosphorylation status of I kappa B alpha following treatment with either of these agents.
S8 1466-1646 Sentence denotes These results suggest that tyrosine phosphorylation of I kappa B alpha during hypoxia is an important proximal step which precedes its dissociation and degradation from NF-kappa B.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-7 other_name denotes Hypoxia
T2 33-55 protein_molecule denotes nuclear factor kappa B
T3 87-102 protein_molecule denotes I kappa B alpha
T4 106-114 amino_acid_monomer denotes tyrosine
T5 141-156 cell_type denotes mammalian cells
T6 184-219 protein_family_or_group denotes transcriptional regulatory proteins
T7 228-250 protein_molecule denotes nuclear factor kappa B
T8 252-262 protein_molecule denotes NF-kappa B
T9 292-312 DNA_family_or_group denotes early response genes
T10 364-371 other_name denotes hypoxia
T11 394-409 protein_molecule denotes I kappa B alpha
T12 433-443 protein_molecule denotes NF-kappa B
T13 491-514 DNA_molecule denotes reporter gene construct
T14 530-540 protein_molecule denotes NF-kappa B
T15 587-594 other_organic_compound denotes protein
T16 595-603 amino_acid_monomer denotes tyrosine
T17 630-654 DNA_domain_or_region denotes dominant negative allele
T18 658-665 DNA_domain_or_region denotes c-Raf-1
T19 667-674 protein_molecule denotes Raf 301
T20 686-701 protein_molecule denotes I kappa B alpha
T21 715-725 protein_molecule denotes NF-kappa B
T22 758-785 DNA_molecule denotes kappa B reporter constructs
T23 789-796 other_name denotes hypoxia
T24 877-892 protein_molecule denotes I kappa B alpha
T25 898-908 protein_molecule denotes NF-kappa B
T26 943-958 protein_molecule denotes I kappa B alpha
T27 982-998 other_name denotes hypoxic exposure
T28 1018-1026 amino_acid_monomer denotes tyrosine
T29 1067-1083 other_name denotes hypoxic exposure
T30 1115-1123 amino_acid_monomer denotes tyrosine
T31 1147-1162 protein_molecule denotes I kappa B alpha
T32 1173-1188 protein_molecule denotes I kappa B alpha
T33 1205-1215 protein_molecule denotes NF-kappa B
T34 1262-1272 protein_molecule denotes NF-kappa B
T35 1281-1306 other_organic_compound denotes phorbol myristate acetate
T36 1310-1331 protein_family_or_group denotes tumor necrosis factor
T37 1366-1374 amino_acid_monomer denotes tyrosine
T38 1401-1416 protein_molecule denotes I kappa B alpha
T39 1493-1501 amino_acid_monomer denotes tyrosine
T40 1521-1536 protein_molecule denotes I kappa B alpha
T41 1544-1551 other_name denotes hypoxia
T42 1635-1645 protein_molecule denotes NF-kappa B