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PubMed:8108414 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 22-47 protein denotes NF-kappa B transactivator
T2 48-52 protein denotes RelA
T3 54-57 protein denotes p65
T4 71-93 protein denotes cytoplasmic inhibitors
T5 105-119 protein denotes ankyrin motifs
T6 121-125 protein denotes RelA
T7 127-130 protein denotes p65
T8 191-231 protein denotes heterodimeric p50-p65 NF-kappa B complex
T9 247-273 protein denotes high-affinity binding site
T10 282-303 protein denotes cytoplasmic inhibitor
T11 305-320 protein denotes I kappa B alpha
T12 349-364 protein denotes I kappa B alpha
T13 438-448 protein denotes NF-kappa B
T14 486-513 protein denotes tumor necrosis factor alpha
T15 537-552 protein denotes I kappa B alpha
T16 556-569 cell_type denotes human T cells
T17 646-661 protein denotes I kappa B alpha
T18 746-750 protein denotes RelA
T19 794-810 protein denotes cytoplasmic RelA
T20 846-861 protein denotes I kappa B alpha
T21 882-909 protein denotes ankyrin motif-rich proteins
T22 940-987 DNA denotes NF-kappa B2 (p100) and NF-kappa B1 (p105) genes
T23 1009-1013 protein denotes RelA
T24 1013-1029 protein denotes -I kappa B alpha
T25 1031-1062 protein denotes RelA-p100 cytoplasmic complexes
T26 1093-1120 protein denotes tumor necrosis factor alpha
T27 1139-1143 protein denotes p100
T28 1179-1183 protein denotes RelA
T29 1240-1244 protein denotes RelA
T30 1249-1253 protein denotes p100
T31 1267-1296 protein denotes conserved Rel homology domain
T32 1326-1353 protein denotes nuclear localization signal
T33 1357-1361 protein denotes RelA
T34 1385-1400 protein denotes I kappa B alpha
T35 1414-1418 protein denotes p100
T36 1433-1437 protein denotes RelA
T37 1460-1491 protein denotes C-terminal ankyrin motif domain
T38 1533-1537 protein denotes RelA
T39 1565-1580 protein denotes I kappa B alpha
T40 1590-1594 protein denotes RelA
T41 1606-1615 RNA denotes p100 mRNA
T42 1787-1805 protein denotes nuclear NF-kappa B

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-120 Sentence denotes Autoregulation of the NF-kappa B transactivator RelA (p65) by multiple cytoplasmic inhibitors containing ankyrin motifs.
S2 121-321 Sentence denotes RelA (p65) functions as the critical transactivating component of the heterodimeric p50-p65 NF-kappa B complex and contains a high-affinity binding site for its cytoplasmic inhibitor, I kappa B alpha.
S3 322-449 Sentence denotes After cellular activation, I kappa B alpha is rapidly degraded in concert with the induced nuclear translocation of NF-kappa B.
S4 450-619 Sentence denotes The present study demonstrates that tumor necrosis factor alpha-induced degradation of I kappa B alpha in human T cells is preceded by its rapid phosphorylation in vivo.
S5 620-751 Sentence denotes However, these effects on I kappa B alpha result in nuclear mobilization of only a fraction of the entire cytoplasmic pool of RelA.
S6 752-1639 Sentence denotes Subsequent studies have revealed that (i) cytoplasmic RelA is stably associated not only with I kappa B alpha but also with other ankyrin motif-rich proteins including the products of the NF-kappa B2 (p100) and NF-kappa B1 (p105) genes; (ii) in contrast to RelA-I kappa B alpha, RelA-p100 cytoplasmic complexes are not dissociated following tumor necrosis factor alpha activation; (iii) p100 functions as a potent inhibitor of RelA-mediated transcription in vivo; (iv) the interaction of RelA and p100 involves the conserved Rel homology domain of both proteins but not the nuclear localization signal of RelA, which is required for I kappa B alpha binding; (v) p100 inhibition of RelA function requires the C-terminal ankyrin motif domain, which mediates cytoplasmic retention of RelA; and (vi) as observed with I kappa B alpha, nuclear RelA stimulates p100 mRNA and protein expression.
S7 1640-1806 Sentence denotes These findings thus reveal the presence of a second inducible autoregulated inhibitory pathway that helps ensure the rapid but transient action of nuclear NF-kappa B.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 18-58 NP denotes the NF-kappa B transactivator RelA (p65)
C2 121-131 NP denotes RelA (p65)
C3 187-231 NP denotes the heterodimeric p50-p65 NF-kappa B complex
C5 278-281 NP denotes its
C4 278-303 NP denotes its cytoplasmic inhibitor
C6 305-320 NP denotes I kappa B alpha
C7 349-364 NP denotes I kappa B alpha
C8 537-569 NP denotes I kappa B alpha in human T cells
C9 585-588 NP denotes its
C10 646-661 NP denotes I kappa B alpha
C11 746-750 NP denotes RelA
C12 846-861 NP denotes I kappa B alpha
C13 936-958 NP denotes the NF-kappa B2 (p100)
C14 1009-1014 NP denotes RelA-
C15 1031-1036 NP denotes RelA-
C16 1139-1143 NP denotes p100
C17 1179-1184 NP denotes RelA-
C18 1240-1244 NP denotes RelA
C19 1249-1253 NP denotes p100
C20 1357-1361 NP denotes RelA
C21 1363-1368 NP denotes which
C22 1433-1437 NP denotes RelA
C23 1456-1491 NP denotes the C-terminal ankyrin motif domain
C24 1493-1498 NP denotes which
C25 1533-1538 NP denotes RelA;
C26 1565-1580 NP denotes I kappa B alpha
C27 1683-1734 NP denotes a second inducible autoregulated inhibitory pathway
C28 1735-1739 NP denotes that
R1 C2 C1 coref-ident RelA (p65),the NF-kappa B transactivator RelA (p65)
R2 C4 C3 coref-pron its cytoplasmic inhibitor,the heterodimeric p50-p65 NF-kappa B complex
R3 C7 C6 coref-ident I kappa B alpha,I kappa B alpha
R4 C8 C7 coref-ident I kappa B alpha in human T cells,I kappa B alpha
R5 C9 C8 coref-pron its,I kappa B alpha in human T cells
R6 C10 C8 coref-ident I kappa B alpha,I kappa B alpha in human T cells
R7 C11 C2 coref-other RelA,RelA (p65)
R8 C12 C10 coref-ident I kappa B alpha,I kappa B alpha
R9 C14 C11 coref-ident RelA-,RelA
R10 C15 C14 coref-ident RelA-,RelA-
R11 C16 C13 coref-ident p100,the NF-kappa B2 (p100)
R12 C17 C15 coref-ident RelA-,RelA-
R13 C18 C17 coref-ident RelA,RelA-
R14 C19 C16 coref-ident p100,p100
R15 C20 C18 coref-ident RelA,RelA
R16 C21 C20 coref-relat which,RelA
R17 C22 C20 coref-ident RelA,RelA
R18 C24 C23 coref-relat which,the C-terminal ankyrin motif domain
R19 C25 C22 coref-ident RelA;,RelA
R20 C26 C12 coref-ident I kappa B alpha,I kappa B alpha
R21 C28 C27 coref-relat that,a second inducible autoregulated inhibitory pathway

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 22-32 protein_complex denotes NF-kappa B
T2 48-52 protein_subunit denotes RelA
T3 54-57 protein_subunit denotes p65
T4 71-93 protein_family_or_group denotes cytoplasmic inhibitors
T5 121-125 protein_subunit denotes RelA
T6 127-130 protein_subunit denotes p65
T7 191-209 protein_complex denotes heterodimeric p50-
T8 209-212 protein_subunit denotes p65
T9 213-223 protein_complex denotes NF-kappa B
T10 247-273 protein_domain_or_region denotes high-affinity binding site
T11 282-303 protein_family_or_group denotes cytoplasmic inhibitor
T12 305-320 protein_molecule denotes I kappa B alpha
T13 349-364 protein_molecule denotes I kappa B alpha
T14 438-448 protein_complex denotes NF-kappa B
T15 486-513 protein_molecule denotes tumor necrosis factor alpha
T16 537-552 protein_molecule denotes I kappa B alpha
T17 556-569 cell_type denotes human T cells
T18 646-661 protein_molecule denotes I kappa B alpha
T19 726-742 other_name denotes cytoplasmic pool
T20 746-750 protein_subunit denotes RelA
T21 794-805 protein_subunit denotes cytoplasmic
T22 806-810 protein_subunit denotes RelA
T23 846-861 protein_molecule denotes I kappa B alpha
T24 882-909 protein_family_or_group denotes ankyrin motif-rich proteins
T25 1009-1013 protein_subunit denotes RelA
T26 1013-1029 protein_molecule denotes -I kappa B alpha
T27 1031-1035 protein_subunit denotes RelA
T28 1093-1120 protein_molecule denotes tumor necrosis factor alpha
T29 1139-1143 protein_molecule denotes p100
T30 1179-1183 protein_subunit denotes RelA
T31 1240-1244 protein_subunit denotes RelA
T32 1249-1253 protein_molecule denotes p100
T33 1267-1296 protein_domain_or_region denotes conserved Rel homology domain
T34 1326-1353 protein_domain_or_region denotes nuclear localization signal
T35 1357-1361 protein_subunit denotes RelA
T36 1385-1400 protein_molecule denotes I kappa B alpha
T37 1414-1418 protein_molecule denotes p100
T38 1433-1437 protein_subunit denotes RelA
T39 1460-1491 protein_domain_or_region denotes C-terminal ankyrin motif domain
T40 1533-1537 protein_subunit denotes RelA
T41 1565-1580 protein_molecule denotes I kappa B alpha
T42 1590-1594 protein_subunit denotes RelA
T43 1606-1610 protein_molecule denotes p100
T44 1620-1638 other_name denotes protein expression
T45 1692-1734 other_name denotes inducible autoregulated inhibitory pathway
T46 1787-1794 protein_complex denotes nuclear
T47 1795-1805 protein_complex denotes NF-kappa B