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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 893-898 http://identifiers.org/oryzabase.gene/11165 denotes small
T2 940-946 http://identifiers.org/oryzabase.gene/14448 denotes HMGR I
T3 1249-1255 http://identifiers.org/oryzabase.gene/14448 denotes HMGR I
T27480 893-898 http://identifiers.org/ricegap/LOC_Os02g34850 denotes small
T30028 940-946 http://identifiers.org/ricegap/LOC_Os02g48330 denotes HMGR I
T37553 1249-1255 http://identifiers.org/ricegap/LOC_Os02g48330 denotes HMGR I
T69100 893-898 http://identifiers.org/rapdb.locus/Os02g0554000 denotes small
T20249 940-946 http://identifiers.org/rapdb.locus/Os02g0713900 denotes HMGR I
T67641 1249-1255 http://identifiers.org/rapdb.locus/Os02g0713900 denotes HMGR I
T30281 940-946 http://identifiers.org/uniprot/Q0DY59 denotes HMGR I
T86975 1249-1255 http://identifiers.org/uniprot/Q0DY59 denotes HMGR I
M_0 195-205 hunflair:NA:Chemical denotes isoprenoid
M_1 664-669 hunflair:NA:Gene denotes HMGRs
M_2 1174-1192 hunflair:NA:Species denotes Magnaporthe grisea
M_3 114-126 hunflair:NA:Species denotes Oryza sativa
M_4 23-60 hunflair:NA:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_5 321-358 hunflair:NA:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_6 370-374 hunflair:NA:Gene denotes HMGR
M_7 537-541 hunflair:NA:Gene denotes HMGR
M_8 588-592 hunflair:NA:Gene denotes HMGR
M_9 909-913 hunflair:NA:Gene denotes HMGR
M_10 940-944 hunflair:NA:Gene denotes HMGR
M_11 1249-1253 hunflair:NA:Gene denotes HMGR
M_12 23-70 hunflair:NA:Gene denotes 3-hydroxy-3-methylglutaryl coenzyme A reductase
M_13 321-368 hunflair:NA:Gene denotes 3-hydroxy-3-methylglutaryl coenzyme A reductase
M_14 712-722 hunflair:NA:Chemical denotes amino acid
M_15 128-140 hunflair:NA:Chemical denotes phytoalexins
M_16 108-112 hunflair:NA:Species denotes rice
M_17 432-436 hunflair:NA:Species denotes rice
M_18 532-536 hunflair:NA:Species denotes rice
M_19 870-874 hunflair:NA:Species denotes rice
M_20 1015-1019 hunflair:NA:Species denotes rice
M_21 1210-1214 hunflair:NA:Species denotes rice
M_22 1293-1297 hunflair:NA:Species denotes rice
M_23 1442-1446 hunflair:NA:Species denotes rice
M_24 159-170 hunflair:NA:Chemical denotes oryzalexins
M_25 1210-1228 hunflair:NA:Disease denotes rice blast disease
M_26 15-22 hunflair:NA:Species denotes monocot
M_27 275-284 hunflair:NA:Species denotes mammalian
M_28 940-946 hunflair:NA:Gene denotes HMGR I
M_29 1249-1255 hunflair:NA:Gene denotes HMGR I
M_30 142-154 hunflair:NA:Chemical denotes momilactones
M_31 1298-1309 hunflair:NA:Chemical denotes phytoalexin

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 893-905 cand:PO:0025449-secondary xylem vessel member denotes small family
M_1 893-905 cand:PO:0025269-collective organ part structure denotes small family
M_2 893-905 cand:PO:0025448-primary xylem vessel member denotes small family
M_3 893-905 cand:PECO:0007125-genetic environment denotes small family
M_4 893-905 cand:TO:0000558-small vascular bundle number denotes small family
M_5 893-905 cand:TO:0000840-collective plant structure morphology trait denotes small family
M_6 893-905 cand:funRiceGene:256-salinity denotes small family
M_7 893-905 cand:funRiceGene:54-small leaves denotes small family
M_8 893-905 cand:PECO:0007057-soil fauna denotes small family
M_9 893-905 cand:WTO:0000460-gall midge denotes small family
M_10 893-905 cand:PO:0030099-samara fruit denotes small family
M_11 909-913 GeneID:NA denotes HMGR
T49862 114-126 xzyao:1553 denotes Oryza sativa
T33024 1015-1026 xzyao:23828 denotes rice plants
T4885 1130-1141 xzyao:4972 denotes fungal cell
T51312 1137-1146 funRiceGene:126, xzyao:40746 denotes cell wall
T51709 1130-1146 xzyao:26843 denotes fungal cell wall
T57333 1174-1192 xzyao:33703 denotes Magnaporthe grisea
T37688 893-905 xzyao:40239 denotes small family
T17848 1137-1155 xzyao:25188 denotes cell wall elicitor
T21362 1108-1124 xzyao:22608 denotes suspension cells
T1266 1215-1220 funRiceGene:223 denotes blast
T67767 849-864 xzyao:17009 denotes plant sequences
T75432 1326-1346 xzyao:42508 denotes response to pathogen
M_12 1221-1228 WTO:0000130, funRiceGene:18 denotes disease
M_13 998-1004 funRiceGene:183 denotes floral
M_14 1210-1228 xzyao:3154 denotes rice blast disease
M_15 1421-1428 funRiceGene:307 denotes defense
M_16 1165-1173 WTO:0000245, funRiceGene:419 denotes pathogen
M_17 1338-1346 WTO:0000245, funRiceGene:419 denotes pathogen
M_18 983-993 funRiceGene:54 denotes vegetative
M_19 1215-1228 funRiceGene:148, xzyao:17825 denotes blast disease
M_20 377-383 xzyao:15915 denotes A gene
M_21 1421-1438 xzyao:1722 denotes defense mechanism
M_22 1338-1353 xzyao:40129 denotes pathogen attack
M_23 1298-1322 xzyao:34393 denotes phytoalexin biosynthesis
M_24 1392-1403 xzyao:16392 denotes a component
M_25 1059-1067 funRiceGene:77 denotes wounding
M_26 964-974 xzyao:43198 denotes low levels
M_27 218-228 xzyao:827 denotes early step
M_28 998-1011 xzyao:33833 denotes floral organs
M_29 712-722 xzyao:10364 denotes amino acid
M_30 1210-1220 xzyao:29995 denotes rice blast
M_31 1293-1309 xzyao:15481 denotes rice phytoalexin
M_32 23-60 hunflair:NA:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_33 321-358 hunflair:NA:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_34 23-70 hunflair:NA:Gene denotes 3-hydroxy-3-methylglutaryl coenzyme A reductase
M_35 321-368 hunflair:NA:Gene denotes 3-hydroxy-3-methylglutaryl coenzyme A reductase
M_36 1174-1192 hunflair:NA:Species denotes Magnaporthe grisea
M_37 664-669 hunflair:NA:Gene denotes HMGRs
M_38 142-154 hunflair:NA:Chemical denotes momilactones
M_39 195-205 hunflair:NA:Chemical denotes isoprenoid
M_40 712-722 hunflair:NA:Chemical denotes amino acid
M_41 1210-1228 hunflair:NA:Disease denotes rice blast disease
M_42 114-126 hunflair:NA:Species denotes Oryza sativa
M_43 940-946 hunflair:NA:Gene denotes HMGR I
M_44 1249-1255 hunflair:NA:Gene denotes HMGR I
M_45 1298-1309 hunflair:NA:Chemical denotes phytoalexin
M_46 128-140 hunflair:NA:Chemical denotes phytoalexins
M_47 15-22 hunflair:NA:Species denotes monocot
M_48 159-170 hunflair:NA:Chemical denotes oryzalexins
M_49 108-112 hunflair:NA:Species denotes rice
M_50 432-436 hunflair:NA:Species denotes rice
M_51 532-536 hunflair:NA:Species denotes rice
M_52 870-874 hunflair:NA:Species denotes rice
M_53 1015-1019 hunflair:NA:Species denotes rice
M_54 1210-1214 hunflair:NA:Species denotes rice
M_55 1293-1297 hunflair:NA:Species denotes rice
M_56 1442-1446 hunflair:NA:Species denotes rice
M_57 275-284 hunflair:NA:Species denotes mammalian
M_58 370-374 hunflair:NA:Gene denotes HMGR
M_59 537-541 hunflair:NA:Gene denotes HMGR
M_60 588-592 hunflair:NA:Gene denotes HMGR
M_61 909-913 hunflair:NA:Gene denotes HMGR
M_62 940-944 hunflair:NA:Gene denotes HMGR
M_63 1249-1253 hunflair:NA:Gene denotes HMGR
M_64 23-49 pubtator:MESH:C008047:Chemical denotes 3-hydroxy-3-methylglutaryl
M_65 321-347 pubtator:MESH:C008047:Chemical denotes 3-hydroxy-3-methylglutaryl
M_66 142-154 pubtator:MESH:C116023:Chemical denotes momilactones
M_67 195-205 pubtator:MESH:D013729:Chemical denotes isoprenoid
M_68 370-374 pubtator:3159:Gene denotes HMGR
M_69 537-541 pubtator:3159:Gene denotes HMGR
M_70 588-592 pubtator:3159:Gene denotes HMGR
M_71 909-913 pubtator:3159:Gene denotes HMGR
M_72 940-944 pubtator:3159:Gene denotes HMGR
M_73 1249-1253 pubtator:3159:Gene denotes HMGR
M_74 23-60 pubtator:MESH:C008047:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_75 321-358 pubtator:MESH:C008047:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_76 275-284 pubtator:9606:Species denotes mammalian
M_77 108-112 pubtator:4530:Species denotes rice
M_78 432-436 pubtator:4530:Species denotes rice
M_79 532-536 pubtator:4530:Species denotes rice
M_80 870-874 pubtator:4530:Species denotes rice
M_81 1015-1019 pubtator:4530:Species denotes rice
M_82 1210-1214 pubtator:4530:Species denotes rice
M_83 1293-1297 pubtator:4530:Species denotes rice
M_84 1442-1446 pubtator:4530:Species denotes rice
M_85 1174-1192 pubtator:148305:Species denotes Magnaporthe grisea
M_86 689-699 pubtator::Disease denotes hydropathy
M_87 114-126 pubtator:4530:Species denotes Oryza sativa

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 1165-1173 WTO:0000245, funRiceGene:419 denotes pathogen
M_1 1338-1346 WTO:0000245, funRiceGene:419 denotes pathogen
M_2 983-993 funRiceGene:54 denotes vegetative
M_3 1137-1146 funRiceGene:126, xzyao:2935 denotes cell wall
M_4 218-228 xzyao:7624 denotes early step
M_5 998-1004 funRiceGene:183 denotes floral
M_6 1421-1428 funRiceGene:307 denotes defense
M_7 1215-1220 funRiceGene:223 denotes blast
M_8 998-1011 xzyao:2270 denotes floral organs
M_9 15-22 hunflair:NA:Species denotes monocot
M_10 23-60 hunflair:NA:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_11 321-358 hunflair:NA:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_12 128-140 hunflair:NA:Chemical denotes phytoalexins
M_13 275-284 hunflair:NA:Species denotes mammalian
M_14 159-170 hunflair:NA:Chemical denotes oryzalexins
M_15 195-205 hunflair:NA:Chemical denotes isoprenoid
M_16 114-126 hunflair:NA:Species denotes Oryza sativa
M_17 142-154 hunflair:NA:Chemical denotes momilactones
M_18 1210-1228 hunflair:NA:Disease denotes rice blast disease
M_19 712-722 hunflair:NA:Chemical denotes amino acid
M_20 108-112 hunflair:NA:Species denotes rice
M_21 432-436 hunflair:NA:Species denotes rice
M_22 532-536 hunflair:NA:Species denotes rice
M_23 870-874 hunflair:NA:Species denotes rice
M_24 1015-1019 hunflair:NA:Species denotes rice
M_25 1210-1214 hunflair:NA:Species denotes rice
M_26 1293-1297 hunflair:NA:Species denotes rice
M_27 1442-1446 hunflair:NA:Species denotes rice
M_28 1174-1192 hunflair:NA:Species denotes Magnaporthe grisea
M_29 940-946 hunflair:NA:Gene denotes HMGR I
M_30 1249-1255 hunflair:NA:Gene denotes HMGR I
M_31 1298-1309 hunflair:NA:Chemical denotes phytoalexin
M_32 664-669 hunflair:NA:Gene denotes HMGRs
M_33 23-70 hunflair:NA:Gene denotes 3-hydroxy-3-methylglutaryl coenzyme A reductase
M_34 321-368 hunflair:NA:Gene denotes 3-hydroxy-3-methylglutaryl coenzyme A reductase
M_35 370-374 hunflair:NA:Gene denotes HMGR
M_36 537-541 hunflair:NA:Gene denotes HMGR
M_37 588-592 hunflair:NA:Gene denotes HMGR
M_38 909-913 hunflair:NA:Gene denotes HMGR
M_39 940-944 hunflair:NA:Gene denotes HMGR
M_40 1249-1253 hunflair:NA:Gene denotes HMGR
M_41 275-284 pubtator:9606:Species denotes mammalian
M_42 23-49 pubtator:MESH:C008047:Chemical denotes 3-hydroxy-3-methylglutaryl
M_43 321-347 pubtator:MESH:C008047:Chemical denotes 3-hydroxy-3-methylglutaryl
M_44 23-60 pubtator:MESH:C008047:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_45 321-358 pubtator:MESH:C008047:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_46 370-374 pubtator:3159:Gene denotes HMGR
M_47 537-541 pubtator:3159:Gene denotes HMGR
M_48 588-592 pubtator:3159:Gene denotes HMGR
M_49 909-913 pubtator:3159:Gene denotes HMGR
M_50 940-944 pubtator:3159:Gene denotes HMGR
M_51 1249-1253 pubtator:3159:Gene denotes HMGR
M_52 195-205 pubtator:MESH:D013729:Chemical denotes isoprenoid
M_53 1174-1192 pubtator:148305:Species denotes Magnaporthe grisea
M_54 689-699 pubtator::Disease denotes hydropathy
M_55 142-154 pubtator:MESH:C116023:Chemical denotes momilactones
M_56 108-112 pubtator:4530:Species denotes rice
M_57 432-436 pubtator:4530:Species denotes rice
M_58 532-536 pubtator:4530:Species denotes rice
M_59 870-874 pubtator:4530:Species denotes rice
M_60 1015-1019 pubtator:4530:Species denotes rice
M_61 1210-1214 pubtator:4530:Species denotes rice
M_62 1293-1297 pubtator:4530:Species denotes rice
M_63 1442-1446 pubtator:4530:Species denotes rice
M_64 114-126 pubtator:4530:Species denotes Oryza sativa

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 940-946 http://identifiers.org/oryzabase.gene/14448 denotes HMGR I
T2 1249-1255 http://identifiers.org/oryzabase.gene/14448 denotes HMGR I
T11848 940-946 http://identifiers.org/rapdb.locus/Os02g0713900 denotes HMGR I
T88445 1249-1255 http://identifiers.org/rapdb.locus/Os02g0713900 denotes HMGR I

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 607-608 http://identifiers.org/oryzabase.gene/11216 denotes 1

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 195-205 hunflair:NA:Chemical denotes isoprenoid
M_1 664-669 hunflair:NA:Gene denotes HMGRs
M_2 1174-1192 hunflair:NA:Species denotes Magnaporthe grisea
M_3 114-126 hunflair:NA:Species denotes Oryza sativa
M_4 23-60 hunflair:NA:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_5 321-358 hunflair:NA:Chemical denotes 3-hydroxy-3-methylglutaryl coenzyme A
M_6 370-374 hunflair:NA:Gene denotes HMGR
M_7 537-541 hunflair:NA:Gene denotes HMGR
M_8 588-592 hunflair:NA:Gene denotes HMGR
M_9 909-913 hunflair:NA:Gene denotes HMGR
M_10 940-944 hunflair:NA:Gene denotes HMGR
M_11 1249-1253 hunflair:NA:Gene denotes HMGR
M_12 23-70 hunflair:NA:Gene denotes 3-hydroxy-3-methylglutaryl coenzyme A reductase
M_13 321-368 hunflair:NA:Gene denotes 3-hydroxy-3-methylglutaryl coenzyme A reductase
M_14 712-722 hunflair:NA:Chemical denotes amino acid
M_15 128-140 hunflair:NA:Chemical denotes phytoalexins
M_16 108-112 hunflair:NA:Species denotes rice
M_17 432-436 hunflair:NA:Species denotes rice
M_18 532-536 hunflair:NA:Species denotes rice
M_19 870-874 hunflair:NA:Species denotes rice
M_20 1015-1019 hunflair:NA:Species denotes rice
M_21 1210-1214 hunflair:NA:Species denotes rice
M_22 1293-1297 hunflair:NA:Species denotes rice
M_23 1442-1446 hunflair:NA:Species denotes rice
M_24 159-170 hunflair:NA:Chemical denotes oryzalexins
M_25 1210-1228 hunflair:NA:Disease denotes rice blast disease
M_26 15-22 hunflair:NA:Species denotes monocot
M_27 275-284 hunflair:NA:Species denotes mammalian
M_28 940-946 hunflair:NA:Gene denotes HMGR I
M_29 1249-1255 hunflair:NA:Gene denotes HMGR I
M_30 142-154 hunflair:NA:Chemical denotes momilactones
M_31 1298-1309 hunflair:NA:Chemical denotes phytoalexin

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 768-771 http://purl.obolibrary.org/obo/TO_0000587 denotes end

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-103 Sentence denotes Isolation of a monocot 3-hydroxy-3-methylglutaryl coenzyme A reductase gene that is elicitor-inducible.
T2 104-214 Sentence denotes The rice (Oryza sativa) phytoalexins, momilactones and oryzalexins, are synthesized by the isoprenoid pathway.
T3 215-376 Sentence denotes An early step in this pathway, one that is rate-limiting in mammalian systems, is catalyzed by the enzyme 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGR).
T4 377-495 Sentence denotes A gene that encodes this enzyme has been isolated from rice, and found to contain an open reading frame of 1527 bases.
T5 496-732 Sentence denotes The encoded protein sequence of the rice HMGR appears to be conserved with respect to other HMGR proteins, and 1 or 2 membrane-spanning domains characteristic of plant HMGRs are predicted by a hydropathy plot of the amino acid sequence.
T6 733-865 Sentence denotes The protein is truncated at its 5' end, and shows reduced sequence conservation in this region as compared to other plant sequences.
T7 866-920 Sentence denotes The rice genome contains a small family of HMGR genes.
T8 921-1027 Sentence denotes The isolated gene, HMGR I, is expressed at low levels in both vegetative and floral organs of rice plants.
T9 1028-1229 Sentence denotes It is not induced in plants by wounding, but is strongly and rapidly induced in suspension cells by a fungal cell wall elicitor from the pathogen Magnaporthe grisea, causal agent of rice blast disease.
T10 1230-1447 Sentence denotes This suggests that HMGR I may be important in the induction of rice phytoalexin biosynthesis in response to pathogen attack, and therefore may play a key role as a component of the inducible defense mechanism in rice.