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PubMed:7964483 JSONTXT

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DisGeNET

Id Subject Object Predicate Lexical cue
T0 98-102 gene:6741 denotes SS-B
T1 149-167 disease:C1527336 denotes Sjögrens' syndrome
R1 T0 T1 associated_with SS-B,Sjögrens' syndrome

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 14-25 RNA denotes transcripts
T2 83-102 protein denotes autoantigen La/SS-B
T3 110-122 DNA denotes cDNA library
T4 171-183 DNA denotes cDNA library
T5 219-230 cell_type denotes lymphocytes
T6 293-305 DNA denotes cDNA library
T7 385-412 protein denotes nuclear autoantigen La/SS-B
T8 445-452 RNA denotes La mRNA
T9 497-504 RNA denotes La mRNA
T10 531-537 DNA denotes exon 1
T11 584-597 DNA denotes exons 1 and 2
T12 614-632 DNA denotes alternative 5'-end
T13 650-656 DNA denotes intron
T14 690-715 DNA denotes alternative promoter site
T15 741-747 DNA denotes intron
T16 766-772 DNA denotes exon 1
T17 810-829 RNA denotes alternative La mRNA
T18 940-960 protein denotes transcription factor
T19 988-1006 DNA denotes NF-kappa B element
T20 1099-1126 protein denotes nuclear autoantigen La/SS-B

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
7964483-0#98#102#gene6741 98-102 gene6741 denotes SS-B
7964483-0#149#167#diseaseC1527336 149-167 diseaseC1527336 denotes Sjögrens' syndrome
98#102#gene6741149#167#diseaseC1527336 7964483-0#98#102#gene6741 7964483-0#149#167#diseaseC1527336 associated_with SS-B,Sjögrens' syndrome

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 79-102 NP denotes the autoantigen La/SS-B
C3 126-167 NP denotes a patient with primary Sjögrens' syndrome
C2 108-167 NP denotes a cDNA library of a patient with primary Sjögrens' syndrome
C4 169-183 NP denotes A cDNA library
C5 234-287 NP denotes an autoimmune patient with primary Sjögrens' syndrome
C6 289-305 NP denotes The cDNA library
C7 324-336 NP denotes the patients
C8 381-412 NP denotes the nuclear autoantigen La/SS-B
C9 422-452 NP denotes an alternative type of La mRNA
C10 527-537 NP denotes the exon 1
C11 687-715 NP denotes an alternative promoter site
C12 717-722 NP denotes which
C14 762-772 NP denotes the exon 1
C13 737-772 NP denotes the intron downstream of the exon 1
C15 806-829 NP denotes the alternative La mRNA
C16 920-930 NP denotes the intron
C17 1095-1126 NP denotes the nuclear autoantigen La/SS-B
R1 C4 C2 coref-ident A cDNA library,a cDNA library of a patient with primary Sjögrens' syndrome
R2 C5 C3 coref-ident an autoimmune patient with primary Sjögrens' syndrome,a patient with primary Sjögrens' syndrome
R3 C6 C4 coref-ident The cDNA library,A cDNA library
R4 C7 C5 coref-ident the patients,an autoimmune patient with primary Sjögrens' syndrome
R5 C8 C1 coref-ident the nuclear autoantigen La/SS-B,the autoantigen La/SS-B
R6 C12 C11 coref-relat which,an alternative promoter site
R7 C14 C10 coref-ident the exon 1,the exon 1
R8 C15 C9 coref-ident the alternative La mRNA,an alternative type of La mRNA
R9 C16 C13 coref-ident the intron,the intron downstream of the exon 1
R10 C17 C8 coref-ident the nuclear autoantigen La/SS-B,the nuclear autoantigen La/SS-B

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-168 Sentence denotes One gene, two transcripts: isolation of an alternative transcript encoding for the autoantigen La/SS-B from a cDNA library of a patient with primary Sjögrens' syndrome.
S2 169-288 Sentence denotes A cDNA library was prepared from peripheral blood lymphocytes of an autoimmune patient with primary Sjögrens' syndrome.
S3 289-413 Sentence denotes The cDNA library was screened with the patients own autoimmune serum being monospecific for the nuclear autoantigen La/SS-B.
S4 414-538 Sentence denotes Thereby an alternative type of La mRNA was identified that differed from the known La mRNA due to an exchange of the exon 1.
S5 539-657 Sentence denotes Sequencing of the genomic region between the exons 1 and 2 showed that the alternative 5'-end is a part of the intron.
S6 658-789 Sentence denotes In addition, the presence of an alternative promoter site, which exists within the intron downstream of the exon 1, became evident.
S7 790-916 Sentence denotes In consequence, the alternative La mRNA is the result of a promoter switching combined with an alternative splicing mechanism.
S8 917-1170 Sentence denotes In the intron, further transcription factor binding sites, including a NF-kappa B element, were identified leading to the suggestion that the expression of the gene encoding for the nuclear autoantigen La/SS-B alters in dependence on disease conditions.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 14-25 RNA_family_or_group denotes transcripts
T2 43-74 other_name denotes alternative transcript encoding
T3 83-102 protein_molecule denotes autoantigen La/SS-B
T4 110-122 DNA_family_or_group denotes cDNA library
T5 128-135 multi_cell denotes patient
T6 141-167 other_name denotes primary Sjögrens' syndrome
T7 171-183 DNA_family_or_group denotes cDNA library
T8 219-230 cell_type denotes lymphocytes
T9 248-255 multi_cell denotes patient
T10 261-287 other_name denotes primary Sjögrens' syndrome
T11 293-305 DNA_family_or_group denotes cDNA library
T12 328-336 multi_cell denotes patients
T13 385-392 protein_molecule denotes nuclear
T14 393-412 protein_molecule denotes autoantigen La/SS-B
T15 445-452 RNA_molecule denotes La mRNA
T16 497-504 RNA_molecule denotes La mRNA
T17 531-537 DNA_domain_or_region denotes exon 1
T18 614-632 DNA_domain_or_region denotes alternative 5'-end
T19 650-656 DNA_family_or_group denotes intron
T20 690-715 DNA_domain_or_region denotes alternative promoter site
T21 741-747 DNA_domain_or_region denotes intron
T22 766-772 DNA_domain_or_region denotes exon 1
T23 810-821 RNA_molecule denotes alternative
T24 822-829 RNA_molecule denotes La mRNA
T25 885-915 other_name denotes alternative splicing mechanism
T26 940-960 protein_family_or_group denotes transcription factor
T27 988-1006 DNA_domain_or_region denotes NF-kappa B element
T28 1099-1106 protein_molecule denotes nuclear
T29 1107-1126 protein_molecule denotes autoantigen La/SS-B