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PubMed:7925300 JSONTXT

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MyTest

Id Subject Object Predicate Lexical cue db_id
T1 483-492 Protein denotes TNF-alpha uniprot:P01375
T2 544-547 Protein denotes p50 uniprot:P19838
T3 548-551 Protein denotes p65 uniprot:Q04206
T4 564-569 Protein denotes c-rel uniprot:Q04864
T5 1235-1244 Protein denotes TNF-alpha uniprot:P01375
T6 1846-1855 Protein denotes TNF-alpha uniprot:P01375
T7 833-836 Protein denotes p65 uniprot:Q04206
T8 1155-1158 Protein denotes p65 uniprot:Q04206
T9 1495-1498 Protein denotes p65 uniprot:Q04206
T10 1168-1173 Protein denotes c-rel uniprot:Q04864
T11 14-24 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T12 58-74 Biological_process denotes phosphorylations go:0016310
T13 118-128 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T14 241-251 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T15 327-337 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T16 407-417 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T17 576-586 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T18 783-793 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T19 1078-1088 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T20 1281-1291 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T21 1373-1383 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T22 1413-1423 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T23 1510-1520 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T24 1628-1638 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T25 1931-1941 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T27 94-116 Protein_complex denotes nuclear factor kappa B wikipedia:NF-κB
T28 80-90 Biological_process denotes activation go:0048518
T30 0-10 Biological_process denotes Activation go:0048518
T31 36-45 Biological_process denotes regulated go:0065007
T32 252-261 Protein denotes I kappa B uniprot:P25963
T33 418-427 Protein denotes I kappa B uniprot:P25963
T34 602-617 Protein denotes I kappa B alpha uniprot:P25963
T35 841-856 Protein denotes I kappa B alpha uniprot:P25963
T36 966-981 Protein denotes I kappa B alpha uniprot:P25963
T37 1119-1134 Protein denotes I kappa B alpha uniprot:P25963
T38 1344-1353 Protein denotes I kappa B uniprot:P25963
T39 517-530 Biological_process denotes translocation go:0051179
T40 449-459 Cell denotes HeLa cells
T41 474-481 Cell denotes B cells
T42 737-750 Cell denotes B lymphocytes

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 14-24 protein denotes NF-kappa B
T2 94-116 protein denotes nuclear factor kappa B
T3 118-128 protein denotes NF-kappa B
T4 241-272 protein denotes NF-kappa B/I kappa B components
T5 327-337 protein denotes NF-kappa B
T6 407-444 protein denotes NF-kappa B/I kappa B protein families
T7 449-459 cell_line denotes HeLa cells
T8 474-481 cell_type denotes B cells
T9 544-551 protein denotes p50-p65
T10 564-569 protein denotes c-rel
T11 576-586 protein denotes NF-kappa B
T12 602-617 protein denotes I kappa B alpha
T13 737-750 cell_type denotes B lymphocytes
T14 783-793 protein denotes NF-kappa B
T15 833-836 protein denotes p65
T16 841-856 protein denotes I kappa B alpha
T17 930-934 protein denotes p100
T18 939-943 protein denotes p105
T19 966-981 protein denotes I kappa B alpha
T20 1036-1040 protein denotes p105
T21 1078-1088 protein denotes NF-kappa B
T22 1119-1134 protein denotes I kappa B alpha
T23 1155-1158 protein denotes p65
T24 1168-1173 protein denotes c-rel
T25 1235-1244 protein denotes TNF-alpha
T26 1281-1291 protein denotes NF-kappa B
T27 1344-1363 protein denotes I kappa B molecules
T28 1373-1383 protein denotes NF-kappa B
T29 1413-1423 protein denotes NF-kappa B
T30 1495-1520 protein denotes p65-containing NF-kappa B
T31 1628-1638 protein denotes NF-kappa B
T32 1846-1855 protein denotes TNF-alpha
T33 1931-1941 protein denotes NF-kappa B

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 14-24 NP denotes NF-kappa B
C1 0-24 NP denotes Activation of NF-kappa B
C4 94-129 NP denotes nuclear factor kappa B (NF-kappa B)
C3 76-129 NP denotes The activation of nuclear factor kappa B (NF-kappa B)
C5 483-492 NP denotes TNF-alpha
C6 544-569 NP denotes p50-p65, but not of c-rel
C7 858-873 NP denotes Phosphorylation
C8 966-981 NP denotes I kappa B alpha
C9 1036-1040 NP denotes p105
C10 1049-1052 NP denotes its
C11 1078-1088 NP denotes NF-kappa B
C12 1119-1134 NP denotes I kappa B alpha
C13 1155-1173 NP denotes p65, but not c-rel
C14 1235-1244 NP denotes TNF-alpha
C15 1510-1520 NP denotes NF-kappa B
C16 1537-1552 NP denotes phosphorylation
C17 1590-1667 NP denotes the induction by hydrogen peroxide of NF-kappa B translocation to the nucleus
C18 1669-1674 NP denotes which
C19 1788-1805 NP denotes the same subunits
C20 1806-1810 NP denotes that
C21 1846-1855 NP denotes TNF-alpha
C22 1863-1878 NP denotes phosphorylation
C24 1931-1941 NP denotes NF-kappa B
C23 1917-1941 NP denotes activation of NF-kappa B
R1 C4 C2 coref-ident nuclear factor kappa B (NF-kappa B),NF-kappa B
R2 C3 C1 coref-ident The activation of nuclear factor kappa B (NF-kappa B),Activation of NF-kappa B
R3 C10 C9 coref-pron its,p105
R4 C11 C4 coref-ident NF-kappa B,nuclear factor kappa B (NF-kappa B)
R5 C12 C8 coref-ident I kappa B alpha,I kappa B alpha
R6 C13 C6 coref-ident "p65, but not c-rel","p50-p65, but not of c-rel"
R7 C14 C5 coref-ident TNF-alpha,TNF-alpha
R8 C15 C11 coref-ident NF-kappa B,NF-kappa B
R9 C16 C7 coref-ident phosphorylation,Phosphorylation
R10 C18 C17 coref-relat which,the induction by hydrogen peroxide of NF-kappa B translocation to the nucleus
R11 C20 C19 coref-relat that,the same subunits
R12 C21 C14 coref-ident TNF-alpha,TNF-alpha
R13 C22 C16 coref-ident phosphorylation,phosphorylation
R14 C24 C15 coref-ident NF-kappa B,NF-kappa B
R15 C23 C3 coref-ident activation of NF-kappa B,The activation of nuclear factor kappa B (NF-kappa B)

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-75 Sentence denotes Activation of NF-kappa B in vivo is regulated by multiple phosphorylations.
S2 76-185 Sentence denotes The activation of nuclear factor kappa B (NF-kappa B) in intact cells is mechanistically not well understood.
S3 186-445 Sentence denotes Therefore we investigated the modifications imposed on NF-kappa B/I kappa B components following stimulation and show that the final step of NF-kappa B induction in vivo involves phosphorylation of several members of the NF-kappa B/I kappa B protein families.
S4 446-570 Sentence denotes In HeLa cells as well as in B cells, TNF-alpha rapidly induced nuclear translocation primarily of p50-p65, but not of c-rel.
S5 571-672 Sentence denotes Both NF-kappa B precursors and I kappa B alpha became strongly phosphorylated with the same kinetics.
S6 673-857 Sentence denotes In addition to the inducible phosphorylation after stimulation, B lymphocytes containing constitutive nuclear NF-kappa B revealed constitutively phosphorylated p65 and I kappa B alpha.
S7 858-982 Sentence denotes Phosphorylation was accompanied by induced processing of the precursors p100 and p105 and by degradation of I kappa B alpha.
S8 983-1135 Sentence denotes As an in vitro model we show that phosphorylation of p105 impedes its ability to interact with NF-kappa B, as has been shown before for I kappa B alpha.
S9 1136-1394 Sentence denotes Surprisingly, even p65, but not c-rel, was phosphorylated after induction in vivo, suggesting that TNF-alpha selectively activates only specific NF-kappa B heteromers and that modifications regulate not only I kappa B molecules but also NF-kappa B molecules.
S10 1395-1562 Sentence denotes In fact, cellular NF-kappa B activity was phosphorylation-dependent and the DNA binding activity of p65-containing NF-kappa B was enhanced by phosphorylation in vitro.
S11 1563-1856 Sentence denotes Furthermore, we found that the induction by hydrogen peroxide of NF-kappa B translocation to the nucleus, which is assumed to be triggered by reactive oxygen intermediates, also coincided with incorporation of phosphate into the same subunits that were modified after stimulation by TNF-alpha.
S12 1857-1950 Sentence denotes Thus, phosphorylation appears to be a general mechanism for activation of NF-kappa B in vivo.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 14-24 protein_molecule denotes NF-kappa B
T2 94-116 protein_molecule denotes nuclear factor kappa B
T3 118-128 protein_molecule denotes NF-kappa B
T4 241-251 protein_molecule denotes NF-kappa B
T5 327-337 protein_molecule denotes NF-kappa B
T6 407-417 protein_molecule denotes NF-kappa B
T7 449-459 cell_line denotes HeLa cells
T8 474-481 cell_type denotes B cells
T9 509-530 other_name denotes nuclear translocation
T10 544-551 protein_complex denotes p50-p65
T11 564-569 protein_molecule denotes c-rel
T12 576-586 protein_molecule denotes NF-kappa B
T13 602-617 protein_molecule denotes I kappa B alpha
T14 737-738 cell_type denotes B
T15 739-750 cell_type denotes lymphocytes
T16 783-793 protein_molecule denotes NF-kappa B
T17 833-836 protein_subunit denotes p65
T18 841-856 protein_molecule denotes I kappa B alpha
T19 930-934 protein_molecule denotes p100
T20 939-943 protein_molecule denotes p105
T21 966-981 protein_molecule denotes I kappa B alpha
T22 1036-1040 protein_molecule denotes p105
T23 1078-1088 protein_molecule denotes NF-kappa B
T24 1119-1134 protein_molecule denotes I kappa B alpha
T25 1155-1158 protein_subunit denotes p65
T26 1168-1173 protein_molecule denotes c-rel
T27 1235-1244 protein_molecule denotes TNF-alpha
T28 1281-1291 protein_molecule denotes NF-kappa B
T29 1344-1353 protein_molecule denotes I kappa B
T30 1373-1383 protein_molecule denotes NF-kappa B
T31 1404-1412 other_name denotes cellular
T32 1413-1423 protein_molecule denotes NF-kappa B
T33 1471-1491 other_name denotes DNA binding activity
T34 1495-1498 protein_subunit denotes p65
T35 1510-1520 protein_molecule denotes NF-kappa B
T36 1537-1552 other_name denotes phosphorylation
T37 1607-1624 inorganic denotes hydrogen peroxide
T38 1628-1638 protein_molecule denotes NF-kappa B
T39 1660-1667 cell_component denotes nucleus
T40 1705-1734 inorganic denotes reactive oxygen intermediates
T41 1773-1782 other_organic_compound denotes phosphate
T42 1846-1855 protein_molecule denotes TNF-alpha
T43 1863-1878 other_name denotes phosphorylation
T44 1931-1941 protein_molecule denotes NF-kappa B