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PubMed:7914194 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
T1 0-111 Sentence denotes A novel human homeobox gene distantly related to proboscipedia is expressed in lymphoid and pancreatic tissues.
T2 112-273 Sentence denotes A novel human homeobox gene, HB9, was isolated from a cDNA library prepared from in vitro stimulated human tonsil B lymphocytes and from a human genomic library.
T3 274-341 Sentence denotes The HB9 gene is composed of 3 exons spread over 6 kilobases of DNA.
T4 342-424 Sentence denotes An open reading frame of 1206 nucleotides is in frame with a diverged homeodomain.
T5 425-540 Sentence denotes The predicted HB9 protein has a molecular mass of 41 kilodaltons and is enriched for alanine, glycine, and leucine.
T6 541-644 Sentence denotes The HB9 homeodomain is most similar to that of the Drosophila melanogaster homeobox gene proboscipedia.
T7 645-806 Sentence denotes Northern blot analysis of poly(A) RNA purified from the human B cell line RPMI 8226 and from activated T cells revealed a major mRNA transcript of 2.2 kilobases.
T8 807-940 Sentence denotes Similar analysis of poly(A) RNA from a variety of adult tissues demonstrated HB9 transcripts in pancreas, small intestine, and colon.
T9 941-1057 Sentence denotes Reverse transcriptase-polymerase chain reaction was used to examine HB9 RNA transcripts in hematopoietic cell lines.
T10 1058-1143 Sentence denotes HB9 RNA transcripts were most prevalent in several human B cell lines and K562 cells.
T11 1144-1314 Sentence denotes In addition, transcripts were detected in RNA prepared from tonsil B cells and in situ hybridization studies localized them in the germinal center region of adult tonsil.
T12 1315-1429 Sentence denotes These findings suggest the involvement of HB9 in regulating gene transcription in lymphoid and pancreatic tissues.
T1 0-111 Sentence denotes A novel human homeobox gene distantly related to proboscipedia is expressed in lymphoid and pancreatic tissues.
T2 112-273 Sentence denotes A novel human homeobox gene, HB9, was isolated from a cDNA library prepared from in vitro stimulated human tonsil B lymphocytes and from a human genomic library.
T3 274-341 Sentence denotes The HB9 gene is composed of 3 exons spread over 6 kilobases of DNA.
T4 342-424 Sentence denotes An open reading frame of 1206 nucleotides is in frame with a diverged homeodomain.
T5 425-540 Sentence denotes The predicted HB9 protein has a molecular mass of 41 kilodaltons and is enriched for alanine, glycine, and leucine.
T6 541-644 Sentence denotes The HB9 homeodomain is most similar to that of the Drosophila melanogaster homeobox gene proboscipedia.
T7 645-806 Sentence denotes Northern blot analysis of poly(A) RNA purified from the human B cell line RPMI 8226 and from activated T cells revealed a major mRNA transcript of 2.2 kilobases.
T8 807-940 Sentence denotes Similar analysis of poly(A) RNA from a variety of adult tissues demonstrated HB9 transcripts in pancreas, small intestine, and colon.
T9 941-1057 Sentence denotes Reverse transcriptase-polymerase chain reaction was used to examine HB9 RNA transcripts in hematopoietic cell lines.
T10 1058-1143 Sentence denotes HB9 RNA transcripts were most prevalent in several human B cell lines and K562 cells.
T11 1144-1314 Sentence denotes In addition, transcripts were detected in RNA prepared from tonsil B cells and in situ hybridization studies localized them in the germinal center region of adult tonsil.
T12 1315-1429 Sentence denotes These findings suggest the involvement of HB9 in regulating gene transcription in lymphoid and pancreatic tissues.

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 903-911 http://purl.obolibrary.org/obo/MAT_0000075 denotes pancreas
T2 913-928 http://purl.obolibrary.org/obo/MAT_0000047 denotes small intestine
T3 919-928 http://purl.obolibrary.org/obo/MAT_0000043 denotes intestine
T4 934-939 http://purl.obolibrary.org/obo/MAT_0000526 denotes colon

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 8-27 DNA denotes human homeobox gene
T2 49-62 DNA denotes proboscipedia
T3 120-139 DNA denotes human homeobox gene
T4 141-144 DNA denotes HB9
T5 166-178 DNA denotes cDNA library
T6 196-239 cell_type denotes vitro stimulated human tonsil B lymphocytes
T7 251-272 DNA denotes human genomic library
T8 278-286 DNA denotes HB9 gene
T9 304-309 DNA denotes exons
T10 345-363 DNA denotes open reading frame
T11 403-423 DNA denotes diverged homeodomain
T12 439-450 protein denotes HB9 protein
T13 545-560 DNA denotes HB9 homeodomain
T14 592-629 DNA denotes Drosophila melanogaster homeobox gene
T15 630-643 DNA denotes proboscipedia
T16 671-682 RNA denotes poly(A) RNA
T17 701-728 cell_line denotes human B cell line RPMI 8226
T18 738-755 cell_type denotes activated T cells
T19 767-788 RNA denotes major mRNA transcript
T20 827-838 RNA denotes poly(A) RNA
T21 884-887 DNA denotes HB9
T22 1009-1028 RNA denotes HB9 RNA transcripts
T23 1032-1056 cell_line denotes hematopoietic cell lines
T24 1058-1077 RNA denotes HB9 RNA transcripts
T25 1109-1127 cell_line denotes human B cell lines
T26 1132-1142 cell_line denotes K562 cells
T27 1204-1218 cell_type denotes tonsil B cells
T28 1357-1360 DNA denotes HB9

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 112-139 NP denotes A novel human homeobox gene
C2 141-144 NP denotes HB9
C3 274-286 NP denotes The HB9 gene
C4 425-450 NP denotes The predicted HB9 protein
C5 541-560 NP denotes The HB9 homeodomain
C6 580-584 NP denotes that
C7 671-682 NP denotes poly(A) RNA
C8 827-838 NP denotes poly(A) RNA
C9 884-899 NP denotes HB9 transcripts
C10 1009-1028 NP denotes HB9 RNA transcripts
C11 1058-1077 NP denotes HB9 RNA transcripts
C12 1157-1168 NP denotes transcripts
C13 1263-1267 NP denotes them
C14 1357-1360 NP denotes HB9
R1 C2 C1 coref-appos HB9,A novel human homeobox gene
R2 C3 C2 coref-ident The HB9 gene,HB9
R3 C4 C3 coref-ident The predicted HB9 protein,The HB9 gene
R4 C6 C5 coref-pron that,The HB9 homeodomain
R5 C8 C7 coref-ident poly(A) RNA,poly(A) RNA
R6 C10 C9 coref-ident HB9 RNA transcripts,HB9 transcripts
R7 C11 C10 coref-ident HB9 RNA transcripts,HB9 RNA transcripts
R8 C13 C12 coref-pron them,transcripts
R9 C14 C2 coref-ident HB9,HB9

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-111 Sentence denotes A novel human homeobox gene distantly related to proboscipedia is expressed in lymphoid and pancreatic tissues.
S2 112-273 Sentence denotes A novel human homeobox gene, HB9, was isolated from a cDNA library prepared from in vitro stimulated human tonsil B lymphocytes and from a human genomic library.
S3 274-341 Sentence denotes The HB9 gene is composed of 3 exons spread over 6 kilobases of DNA.
S4 342-424 Sentence denotes An open reading frame of 1206 nucleotides is in frame with a diverged homeodomain.
S5 425-540 Sentence denotes The predicted HB9 protein has a molecular mass of 41 kilodaltons and is enriched for alanine, glycine, and leucine.
S6 541-644 Sentence denotes The HB9 homeodomain is most similar to that of the Drosophila melanogaster homeobox gene proboscipedia.
S7 645-806 Sentence denotes Northern blot analysis of poly(A) RNA purified from the human B cell line RPMI 8226 and from activated T cells revealed a major mRNA transcript of 2.2 kilobases.
S8 807-940 Sentence denotes Similar analysis of poly(A) RNA from a variety of adult tissues demonstrated HB9 transcripts in pancreas, small intestine, and colon.
S9 941-1057 Sentence denotes Reverse transcriptase-polymerase chain reaction was used to examine HB9 RNA transcripts in hematopoietic cell lines.
S10 1058-1143 Sentence denotes HB9 RNA transcripts were most prevalent in several human B cell lines and K562 cells.
S11 1144-1314 Sentence denotes In addition, transcripts were detected in RNA prepared from tonsil B cells and in situ hybridization studies localized them in the germinal center region of adult tonsil.
S12 1315-1429 Sentence denotes These findings suggest the involvement of HB9 in regulating gene transcription in lymphoid and pancreatic tissues.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 8-27 DNA_family_or_group denotes human homeobox gene
T2 49-62 DNA_domain_or_region denotes proboscipedia
T3 120-139 DNA_family_or_group denotes human homeobox gene
T4 141-144 DNA_domain_or_region denotes HB9
T5 166-178 DNA_family_or_group denotes cDNA library
T6 196-239 cell_type denotes vitro stimulated human tonsil B lymphocytes
T7 251-272 DNA_family_or_group denotes human genomic library
T8 278-281 DNA_domain_or_region denotes HB9
T9 304-309 DNA_family_or_group denotes exons
T10 345-363 DNA_domain_or_region denotes open reading frame
T11 367-383 polynucleotide denotes 1206 nucleotides
T12 403-423 DNA_domain_or_region denotes diverged homeodomain
T13 439-442 DNA_domain_or_region denotes HB9
T14 475-489 other_name denotes 41 kilodaltons
T15 510-517 amino_acid_monomer denotes alanine
T16 519-526 amino_acid_monomer denotes glycine
T17 532-539 amino_acid_monomer denotes leucine
T18 545-548 DNA_domain_or_region denotes HB9
T19 592-629 DNA_domain_or_region denotes Drosophila melanogaster homeobox gene
T20 630-643 DNA_domain_or_region denotes proboscipedia
T21 645-667 other_name denotes Northern blot analysis
T22 671-682 RNA_family_or_group denotes poly(A) RNA
T23 701-728 cell_line denotes human B cell line RPMI 8226
T24 738-755 cell_type denotes activated T cells
T25 767-788 RNA_molecule denotes major mRNA transcript
T26 792-805 polynucleotide denotes 2.2 kilobases
T27 827-838 RNA_family_or_group denotes poly(A) RNA
T28 857-870 tissue denotes adult tissues
T29 884-887 DNA_domain_or_region denotes HB9
T30 903-911 body_part denotes pancreas
T31 913-928 body_part denotes small intestine
T32 934-939 body_part denotes colon
T33 941-988 other_name denotes Reverse transcriptase-polymerase chain reaction
T34 1009-1012 DNA_domain_or_region denotes HB9
T35 1032-1056 cell_line denotes hematopoietic cell lines
T36 1058-1061 DNA_domain_or_region denotes HB9
T37 1109-1127 cell_line denotes human B cell lines
T38 1132-1142 cell_line denotes K562 cells
T39 1204-1218 cell_type denotes tonsil B cells
T40 1226-1252 other_name denotes situ hybridization studies
T41 1275-1297 tissue denotes germinal center region
T42 1301-1313 body_part denotes adult tonsil
T43 1357-1360 DNA_domain_or_region denotes HB9
T44 1375-1393 other_name denotes gene transcription

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 903-911 Disease denotes pancreas http://purl.obolibrary.org/obo/MONDO_0021040

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 8-13 OrganismTaxon denotes human 9606
T2 120-125 OrganismTaxon denotes human 9606
T3 213-218 OrganismTaxon denotes human 9606
T4 251-256 OrganismTaxon denotes human 9606
T5 519-526 OrganismTaxon denotes glycine 3846
T6 592-615 OrganismTaxon denotes Drosophila melanogaster 7227
T7 701-706 OrganismTaxon denotes human 9606
T8 1109-1114 OrganismTaxon denotes human 9606

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 903-911 Body_part denotes pancreas http://purl.obolibrary.org/obo/MAT_0000075
T2 913-928 Body_part denotes small intestine http://purl.obolibrary.org/obo/MAT_0000047
T3 934-939 Body_part denotes colon http://purl.obolibrary.org/obo/MAT_0000526

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 219-225 Body_part denotes tonsil http://purl.obolibrary.org/obo/UBERON_0002372|http://purl.obolibrary.org/obo/UBERON_0002373
T3 226-239 Body_part denotes B lymphocytes http://purl.obolibrary.org/obo/CL_0000236
T4 707-713 Body_part denotes B cell http://purl.obolibrary.org/obo/CL_0000236
T5 903-911 Body_part denotes pancreas http://purl.obolibrary.org/obo/UBERON_0001264|http://purl.obolibrary.org/obo/UBERON_3011040
T7 913-928 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T8 934-939 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T9 1032-1050 Body_part denotes hematopoietic cell http://purl.obolibrary.org/obo/CL_0000988
T10 1115-1121 Body_part denotes B cell http://purl.obolibrary.org/obo/CL_0000236
T11 1204-1210 Body_part denotes tonsil http://purl.obolibrary.org/obo/UBERON_0002372|http://purl.obolibrary.org/obo/UBERON_0002373
T13 1275-1290 Body_part denotes germinal center http://purl.obolibrary.org/obo/UBERON_0009039|http://purl.obolibrary.org/obo/UBERON_0010754
T15 1307-1313 Body_part denotes tonsil http://purl.obolibrary.org/obo/UBERON_0002372|http://purl.obolibrary.org/obo/UBERON_0002373

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 226-239 Cell denotes B lymphocytes http://purl.obolibrary.org/obo/CL:0000236
T2 671-675 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T4 707-713 Cell denotes B cell http://purl.obolibrary.org/obo/CL:0000236
T5 748-755 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T6 827-831 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T8 1032-1050 Cell denotes hematopoietic cell http://purl.obolibrary.org/obo/CL:0000988
T9 1115-1121 Cell denotes B cell http://purl.obolibrary.org/obo/CL:0000236
T10 1211-1218 Cell denotes B cells http://purl.obolibrary.org/obo/CL:0000236