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Test-Species-PubTator

Id Subject Object Predicate Lexical cue resolved_to
1 0-5 Chemical denotes Sugar MESH:D000073893
40 228-247 Chemical denotes phosphoenolpyruvate MESH:D010728
41 255-260 Chemical denotes sugar MESH:D000073893
42 273-283 Chemical denotes PTS sugars -
43 329-335 Chemical denotes sugars MESH:D000073893
44 398-403 Chemical denotes sugar MESH:D000073893
45 543-549 Chemical denotes sugars MESH:D000073893
46 592-597 Chemical denotes sugar MESH:D000073893
47 788-794 Chemical denotes sugars MESH:D000073893
48 929-950 Species denotes Salmonell typhimurium
49 955-971 Species denotes Escherichia coli 562
50 1120-1126 Chemical denotes sugars MESH:D000073893
51 1210-1220 Chemical denotes PTS sugars -
52 1302-1312 Chemical denotes PTS sugars -
53 1324-1331 Chemical denotes maltose MESH:D008320
54 1333-1342 Chemical denotes melibiose MESH:D008553
55 1344-1352 Chemical denotes glycerol MESH:D005990
56 1354-1364 Chemical denotes glycerol-P -
57 1366-1377 Chemical denotes mannose-6-P -
58 1387-1394 Species denotes E. coli 562
59 1396-1403 Chemical denotes lactose MESH:D007785
60 1448-1461 Chemical denotes carbohydrates MESH:D002241
61 1530-1560 Chemical denotes methyl alpha-D-glucopyranoside MESH:C027020
62 1669-1679 Chemical denotes PTS sugars -
63 2028-2038 Chemical denotes PTS sugars -
64 2225-2230 Chemical denotes sugar MESH:D000073893
65 2289-2299 Chemical denotes PTS sugars -
66 2418-2428 Chemical denotes PTS sugars -
67 2642-2650 Chemical denotes fructose MESH:D005632
68 2676-2684 Chemical denotes fructose MESH:D005632
69 2713-2720 Chemical denotes glucose MESH:D005947
70 2724-2731 Chemical denotes mannose MESH:D008358
71 2779-2789 Chemical denotes PTS sugars -
72 2850-2858 Chemical denotes fructose MESH:D005632
73 2909-2917 Chemical denotes fructose MESH:D005632
74 2930-2937 Chemical denotes lactate MESH:D019344
75 2993-3003 Chemical denotes PTS sugars -
76 3054-3062 Chemical denotes fructose MESH:D005632
77 3182-3192 Chemical denotes PTS sugars -

Test-Species-PubDictionaries

Id Subject Object Predicate Lexical cue db_id
T1 38-46 OrganismTaxon denotes bacteria 2|629395
T3 955-971 OrganismTaxon denotes Escherichia coli 562
T4 1387-1394 OrganismTaxon denotes E. coli 562

Test-Species-PubDictionaries-PubMedBERT

Id Subject Object Predicate Lexical cue db_id
T1 38-46 Species denotes bacteria 2|629395
T3 217-222 Species denotes group 536441
T4 955-971 Species denotes Escherichia coli 562
T5 1333-1342 Species denotes melibiose 634906
T6 1387-1394 Species denotes E. coli 562
T7 1802-1809 Species denotes systmes 217228
T8 1894-1898 Species denotes also 209674
T9 2512-2516 Species denotes same 582003

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 1366-1373 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ
T2 2713-2720 Glycan_Motif denotes glucose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G15021LG
T3 2724-2731 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ

sentences

Id Subject Object Predicate Lexical cue
T1 0-16 Sentence denotes Sugar transport.
T2 17-129 Sentence denotes Properties of mutant bacteria defective in proteins of the phosphoenolpyruvate: sugar phosphotransferase system.
T3 130-366 Sentence denotes The bacterial phosphotransferase system (PTS) catalyzes the transfer of the phosphoryl group from phosphoenolpyruvate to its sugar substrates, PTS sugars, concomitant with the translocation of these sugars across the bacterial membrane.
T4 367-631 Sentence denotes The phosphorylation of a given sugar requires four proteins, two general proteins, Enzyme I, and the histidine-containing phosphocarrier protein of the PTS (HPr), used for all sugars, and a pair of proteins specific for that sugar, designated an Enzyme II complex.
T5 632-972 Sentence denotes The phosphotransferase system has been implicated in regulating the induction of synthesis of some catabolic enzyme systems required for the utilization of sugars that are not substrates of the phosphotransferase system, and this and the accompanying reports are concerned with this phenomenon in Salmonell typhimurium and Escherichia coli.
T6 973-1163 Sentence denotes Mutants defective in Enzyme I (ptsI), HPr (ptsH), and certain Enzymes II were isolated, and their abilities to ferment and grow on a wide range of sugars and other compounds were determined.
T7 1164-1404 Sentence denotes The mutants showed the expected properties on PTS sugars, but in addition, ptsH and tight ptsI mutants were unable to utilize certain non-PTS sugars, including maltose, melibiose, glycerol, glycerol-P, mannose-6-P, and, in E. coli, lactose.
T8 1405-1561 Sentence denotes Leaky Enzyme I mutants could utilize these carbohydrates, but were unable to use them in the presence of a PTS sugar such as methyl alpha-D-glucopyranoside.
T9 1562-1810 Sentence denotes In accord with the results reported by other laboratories, the inability of the mutants to utilize the non-PTS sugars was explained by the fact that these cells could not be normally induced to synthesize the corresponding catabolic enzyme systmes.
T10 1811-1865 Sentence denotes This phenomenon is designated PTS-mediated repression.
T11 1866-2111 Sentence denotes PTS-mediated repression was also observed in wild type cells, but by comparing wild type and leaky pts mutants it was shown that the sensitivity to repression by PTS sugars was greatest in mutants containing the lowest levels of Enzyme I or HPr.
T12 2112-2317 Sentence denotes Furthermore, ptsI mutants containing a second site mutation in a gene for an Enzyme II were not repressed by the sugar substrate of that Enzyme II, although repression by other PTS sugars was not affected.
T13 2318-2483 Sentence denotes Transport and other studies further indicated that neither appreciable uptake nor metabolism of the PTS sugars was required for these compounds to effect repression.
T14 2484-2590 Sentence denotes The ptsH mutants showed the same phenotypic properties as the ptsI mutants with some important exceptions.
T15 2591-2651 Sentence denotes First, they could ferment and grow on a PTS sugar, fructose.
T16 2652-2812 Sentence denotes Second, after growth on fructose, (and to a lesser extent on glucose or mannose), such mutants were capable of utilizing other PTS sugars for a few generations.
T17 2813-3004 Sentence denotes Third, growth of the ptsH mutants on fructose relieved PTS-mediated repression; after growth on fructose, but not on lactate, the mutants could grow for several generations on non-PTS sugars.
T18 3005-3193 Sentence denotes Preliminary experiments indicated that growth on fructose resulted in the formation of one or more proteins that could substitute for HPr in the utilization of both PTS and non-PTS sugars.
T1 0-16 Sentence denotes Sugar transport.
T2 17-129 Sentence denotes Properties of mutant bacteria defective in proteins of the phosphoenolpyruvate: sugar phosphotransferase system.
T3 130-366 Sentence denotes The bacterial phosphotransferase system (PTS) catalyzes the transfer of the phosphoryl group from phosphoenolpyruvate to its sugar substrates, PTS sugars, concomitant with the translocation of these sugars across the bacterial membrane.
T4 367-631 Sentence denotes The phosphorylation of a given sugar requires four proteins, two general proteins, Enzyme I, and the histidine-containing phosphocarrier protein of the PTS (HPr), used for all sugars, and a pair of proteins specific for that sugar, designated an Enzyme II complex.
T5 632-972 Sentence denotes The phosphotransferase system has been implicated in regulating the induction of synthesis of some catabolic enzyme systems required for the utilization of sugars that are not substrates of the phosphotransferase system, and this and the accompanying reports are concerned with this phenomenon in Salmonell typhimurium and Escherichia coli.
T6 973-1163 Sentence denotes Mutants defective in Enzyme I (ptsI), HPr (ptsH), and certain Enzymes II were isolated, and their abilities to ferment and grow on a wide range of sugars and other compounds were determined.
T7 1164-1404 Sentence denotes The mutants showed the expected properties on PTS sugars, but in addition, ptsH and tight ptsI mutants were unable to utilize certain non-PTS sugars, including maltose, melibiose, glycerol, glycerol-P, mannose-6-P, and, in E. coli, lactose.
T8 1405-1561 Sentence denotes Leaky Enzyme I mutants could utilize these carbohydrates, but were unable to use them in the presence of a PTS sugar such as methyl alpha-D-glucopyranoside.
T9 1562-1810 Sentence denotes In accord with the results reported by other laboratories, the inability of the mutants to utilize the non-PTS sugars was explained by the fact that these cells could not be normally induced to synthesize the corresponding catabolic enzyme systmes.
T10 1811-1865 Sentence denotes This phenomenon is designated PTS-mediated repression.
T11 1866-2111 Sentence denotes PTS-mediated repression was also observed in wild type cells, but by comparing wild type and leaky pts mutants it was shown that the sensitivity to repression by PTS sugars was greatest in mutants containing the lowest levels of Enzyme I or HPr.
T12 2112-2317 Sentence denotes Furthermore, ptsI mutants containing a second site mutation in a gene for an Enzyme II were not repressed by the sugar substrate of that Enzyme II, although repression by other PTS sugars was not affected.
T13 2318-2483 Sentence denotes Transport and other studies further indicated that neither appreciable uptake nor metabolism of the PTS sugars was required for these compounds to effect repression.
T14 2484-2590 Sentence denotes The ptsH mutants showed the same phenotypic properties as the ptsI mutants with some important exceptions.
T15 2591-2651 Sentence denotes First, they could ferment and grow on a PTS sugar, fructose.
T16 2652-2812 Sentence denotes Second, after growth on fructose, (and to a lesser extent on glucose or mannose), such mutants were capable of utilizing other PTS sugars for a few generations.
T17 2813-3004 Sentence denotes Third, growth of the ptsH mutants on fructose relieved PTS-mediated repression; after growth on fructose, but not on lactate, the mutants could grow for several generations on non-PTS sugars.
T18 3005-3193 Sentence denotes Preliminary experiments indicated that growth on fructose resulted in the formation of one or more proteins that could substitute for HPr in the utilization of both PTS and non-PTS sugars.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1366-1373 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T2 2713-2720 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T3 2724-2731 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 1324-1331 Glycan denotes maltose https://api.glycosmos.org/wurcs2image/latest/png/binary/G44653LT
T2 1333-1342 Glycan denotes melibiose https://api.glycosmos.org/wurcs2image/latest/png/binary/G66481II
T3 1396-1403 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 1324-1331 Glycan denotes maltose https://api.glycosmos.org/wurcs2image/latest/png/binary/G44653LT
T2 1333-1342 Glycan denotes melibiose https://api.glycosmos.org/wurcs2image/latest/png/binary/G66481II
T3 1396-1403 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE

Organism-PubDic

Id Subject Object Predicate Lexical cue db_id
T1 38-46 Species denotes bacteria 2|629395
T3 955-971 Species denotes Escherichia coli 562
T4 1387-1394 Species denotes E. coli 562

Organism-PubTator

Id Subject Object Predicate Lexical cue db_id
48 929-950 Species denotes Salmonell typhimurium
49 955-971 Species denotes Escherichia coli 562
58 1387-1394 Species denotes E. coli 562

Organism-PubDic-Bert-9

Id Subject Object Predicate Lexical cue db_id
T1 38-46 Species denotes bacteria 2|629395
T3 955-971 Species denotes Escherichia coli 562
T4 1387-1394 Species denotes E. coli 562

Organism-PubDic-Bert-8

Id Subject Object Predicate Lexical cue db_id
T1 38-46 Species denotes bacteria 2|629395
T3 217-222 Species denotes group 536441
T4 955-971 Species denotes Escherichia coli 562
T5 1333-1342 Species denotes melibiose 634906
T6 1387-1394 Species denotes E. coli 562
T7 1802-1809 Species denotes systmes 217228
T8 1894-1898 Species denotes also 209674
T9 2512-2516 Species denotes same 582003

Organism-Gold

Id Subject Object Predicate Lexical cue db_id
T1 38-46 Species denotes bacteria 2
T3 955-971 Species denotes Escherichia coli 562
T4 1387-1394 Species denotes E. coli 562
T5 929-950 Species denotes Salmonell typhimurium 90371

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 357-365 Body_part denotes membrane http://purl.obolibrary.org/obo/UBERON_0000094

GlyCosmos15-Taxon

Id Subject Object Predicate Lexical cue db_id
T1 38-46 Organism denotes bacteria 2|629395
T3 955-971 Organism denotes Escherichia coli 562
T4 1387-1394 Organism denotes E. coli 562

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 38-46 OrganismTaxon denotes bacteria 2|629395
T3 955-971 OrganismTaxon denotes Escherichia coli 562
T4 1387-1394 OrganismTaxon denotes E. coli 562

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-16 Sentence denotes Sugar transport.
T2 17-129 Sentence denotes Properties of mutant bacteria defective in proteins of the phosphoenolpyruvate: sugar phosphotransferase system.
T3 130-366 Sentence denotes The bacterial phosphotransferase system (PTS) catalyzes the transfer of the phosphoryl group from phosphoenolpyruvate to its sugar substrates, PTS sugars, concomitant with the translocation of these sugars across the bacterial membrane.
T4 367-631 Sentence denotes The phosphorylation of a given sugar requires four proteins, two general proteins, Enzyme I, and the histidine-containing phosphocarrier protein of the PTS (HPr), used for all sugars, and a pair of proteins specific for that sugar, designated an Enzyme II complex.
T5 632-972 Sentence denotes The phosphotransferase system has been implicated in regulating the induction of synthesis of some catabolic enzyme systems required for the utilization of sugars that are not substrates of the phosphotransferase system, and this and the accompanying reports are concerned with this phenomenon in Salmonell typhimurium and Escherichia coli.
T6 973-1163 Sentence denotes Mutants defective in Enzyme I (ptsI), HPr (ptsH), and certain Enzymes II were isolated, and their abilities to ferment and grow on a wide range of sugars and other compounds were determined.
T7 1164-1404 Sentence denotes The mutants showed the expected properties on PTS sugars, but in addition, ptsH and tight ptsI mutants were unable to utilize certain non-PTS sugars, including maltose, melibiose, glycerol, glycerol-P, mannose-6-P, and, in E. coli, lactose.
T8 1405-1561 Sentence denotes Leaky Enzyme I mutants could utilize these carbohydrates, but were unable to use them in the presence of a PTS sugar such as methyl alpha-D-glucopyranoside.
T9 1562-1810 Sentence denotes In accord with the results reported by other laboratories, the inability of the mutants to utilize the non-PTS sugars was explained by the fact that these cells could not be normally induced to synthesize the corresponding catabolic enzyme systmes.
T10 1811-1865 Sentence denotes This phenomenon is designated PTS-mediated repression.
T11 1866-2111 Sentence denotes PTS-mediated repression was also observed in wild type cells, but by comparing wild type and leaky pts mutants it was shown that the sensitivity to repression by PTS sugars was greatest in mutants containing the lowest levels of Enzyme I or HPr.
T12 2112-2317 Sentence denotes Furthermore, ptsI mutants containing a second site mutation in a gene for an Enzyme II were not repressed by the sugar substrate of that Enzyme II, although repression by other PTS sugars was not affected.
T13 2318-2483 Sentence denotes Transport and other studies further indicated that neither appreciable uptake nor metabolism of the PTS sugars was required for these compounds to effect repression.
T14 2484-2590 Sentence denotes The ptsH mutants showed the same phenotypic properties as the ptsI mutants with some important exceptions.
T15 2591-2651 Sentence denotes First, they could ferment and grow on a PTS sugar, fructose.
T16 2652-2812 Sentence denotes Second, after growth on fructose, (and to a lesser extent on glucose or mannose), such mutants were capable of utilizing other PTS sugars for a few generations.
T17 2813-3004 Sentence denotes Third, growth of the ptsH mutants on fructose relieved PTS-mediated repression; after growth on fructose, but not on lactate, the mutants could grow for several generations on non-PTS sugars.
T18 3005-3193 Sentence denotes Preliminary experiments indicated that growth on fructose resulted in the formation of one or more proteins that could substitute for HPr in the utilization of both PTS and non-PTS sugars.

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 357-365 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158