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MyTest

Id Subject Object Predicate Lexical cue db_id
T10 524-527 Protein denotes p50 uniprot:P19838
T12 528-531 Protein denotes p65 uniprot:Q04206
T14 559-562 Protein denotes p50 uniprot:P19838
T16 563-568 Protein denotes c-rel uniprot:Q04864
T17 1091-1118 Protein denotes tumor necrosis factor alpha P01375
T18 1163-1176 Chemical denotes cycloheximide mesh:D003513
T19 815-818 Protein denotes p65 uniprot:Q04206
T20 933-936 Protein denotes p65 uniprot:Q04206
T21 1191-1194 Protein denotes p65 uniprot:Q04206
T22 905-908 Protein denotes p50 uniprot:P19838
T23 1848-1851 Protein denotes p50 uniprot:P19838
T25 823-828 Protein denotes c-rel uniprot:Q04864
T26 890-895 Protein denotes c-rel uniprot:Q04864
T27 1199-1204 Protein denotes c-rel uniprot:Q04864
T28 1833-1838 Protein denotes c-rel uniprot:Q04864
T3 1791-1794 Protein denotes p65
T30 1397-1406 Protein denotes TNF-alpha uniprot:P01375
T31 1120-1129 Protein denotes TNF-alpha uniprot:P01375
T32 1629-1638 Protein denotes TNF-alpha uniprot:P01375
T33 238-245 Cell denotes T cells
T4 1799-1804 Protein denotes c-rel
T5 1651-1660 Protein denotes TNF-alpha uniprot:P01375
T7 303-306 Protein denotes p50 uniprot:P19838
T8 355-391 Protein denotes interleukin-2 receptor (IL-2R) alpha uniprot:P01589
T35 1479-1489 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T36 307-317 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T37 1734-1744 Protein_complex denotes NF-kappa B wikipedia:NF-κB
T39 20-42 Protein_complex denotes nuclear factor-kappa B wikipedia:NF-κB
T41 141-168 Protein_complex denotes nuclear factor (NF)-kappa B wikipedia:NF-κB

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 20-42 protein denotes nuclear factor-kappa B
T2 61-84 protein denotes T cell receptor complex
T3 94-121 protein denotes tumor necrosis factor alpha
T4 141-168 protein denotes nuclear factor (NF)-kappa B
T5 187-220 protein denotes T cell receptor (TcR)/CD3 complex
T6 238-245 cell_type denotes T cells
T7 303-325 protein denotes p50 NF-kappa B protein
T8 336-351 DNA denotes kappa B element
T9 355-406 DNA denotes interleukin-2 receptor (IL-2R) alpha chain promoter
T10 418-425 cell_type denotes T cells
T11 454-461 protein denotes TcR/CD3
T12 524-544 protein denotes p50.p65 heterodimers
T13 559-581 protein denotes p50.c-rel heterodimers
T14 815-818 protein denotes p65
T15 823-828 protein denotes c-rel
T16 933-941 RNA denotes p65 mRNA
T17 1086-1150 protein denotes anti-tumor necrosis factor alpha (TNF-alpha) monoclonal antibody
T18 1191-1194 protein denotes p65
T19 1199-1204 protein denotes c-rel
T20 1397-1406 protein denotes TNF-alpha
T21 1479-1489 protein denotes NF-kappa B
T22 1529-1536 protein denotes TcR/CD3
T23 1558-1565 protein denotes TcR/CD3
T24 1629-1638 protein denotes TNF-alpha
T25 1651-1660 protein denotes TNF-alpha
T26 1734-1744 protein denotes NF-kappa B
T27 1791-1794 protein denotes p65
T28 1799-1804 protein denotes c-rel
T29 1814-1818 RNA denotes mRNA
T30 1833-1838 protein denotes c-rel
T31 1843-1851 protein denotes p105/p50

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 57-84 NP denotes the T cell receptor complex
C1 20-84 NP denotes nuclear factor-kappa B activation by the T cell receptor complex
C3 94-121 NP denotes tumor necrosis factor alpha
C6 183-220 NP denotes the T cell receptor (TcR)/CD3 complex
C5 141-220 NP denotes nuclear factor (NF)-kappa B activation by the T cell receptor (TcR)/CD3 complex
C4 123-220 NP denotes The regulation of nuclear factor (NF)-kappa B activation by the T cell receptor (TcR)/CD3 complex
C7 286-296 NP denotes activation
C8 524-544 NP denotes p50.p65 heterodimers
C9 559-581 NP denotes p50.c-rel heterodimers
C10 666-670 NP denotes both
C11 727-737 NP denotes activation
C12 790-828 NP denotes nuclear translocation of p65 and c-rel
C13 866-876 NP denotes Activation
C14 890-923 NP denotes c-rel and p105/p50 mRNA synthesis
C15 933-941 NP denotes p65 mRNA
C16 942-947 NP denotes whose
C17 1187-1218 NP denotes the p65 and c-rel translocation
C18 1397-1406 NP denotes TNF-alpha
C20 1479-1500 NP denotes NF-kappa B activation
C19 1461-1500 NP denotes the regulation of NF-kappa B activation
C21 1529-1544 NP denotes TcR/CD3 signals
C22 1558-1565 NP denotes TcR/CD3
C24 1575-1578 NP denotes its
C23 1575-1602 NP denotes its immediate translocation
C25 1604-1609 NP denotes which
C26 1629-1638 NP denotes TNF-alpha
C27 1651-1660 NP denotes TNF-alpha
C28 1734-1755 NP denotes NF-kappa B regulation
C29 1769-1804 NP denotes both translocation of p65 and c-rel
C30 1810-1851 NP denotes new mRNA synthesis for c-rel and p105/p50
R1 C6 C2 coref-ident the T cell receptor (TcR)/CD3 complex,the T cell receptor complex
R2 C5 C1 coref-ident nuclear factor (NF)-kappa B activation by the T cell receptor (TcR)/CD3 complex,nuclear factor-kappa B activation by the T cell receptor complex
R3 C7 C5 coref-ident activation,nuclear factor (NF)-kappa B activation by the T cell receptor (TcR)/CD3 complex
R4 C10 C8 coref-pron both,p50.p65 heterodimers
R5 C10 C9 coref-pron both,p50.c-rel heterodimers
R6 C11 C7 coref-ident activation,activation
R7 C13 C11 coref-ident Activation,activation
R8 C16 C15 coref-relat whose,p65 mRNA
R9 C17 C12 coref-ident the p65 and c-rel translocation,nuclear translocation of p65 and c-rel
R10 C18 C3 coref-ident TNF-alpha,tumor necrosis factor alpha
R11 C20 C5 coref-ident NF-kappa B activation,nuclear factor (NF)-kappa B activation by the T cell receptor (TcR)/CD3 complex
R12 C19 C4 coref-ident the regulation of NF-kappa B activation,The regulation of nuclear factor (NF)-kappa B activation by the T cell receptor (TcR)/CD3 complex
R13 C22 C21 coref-ident TcR/CD3,TcR/CD3 signals
R14 C24 C20 coref-pron its,NF-kappa B activation
R15 C25 C23 coref-relat which,its immediate translocation
R16 C26 C18 coref-ident TNF-alpha,TNF-alpha
R17 C27 C26 coref-ident TNF-alpha,TNF-alpha
R18 C28 C19 coref-ident NF-kappa B regulation,the regulation of NF-kappa B activation
R19 C29 C17 coref-ident both translocation of p65 and c-rel,the p65 and c-rel translocation
R20 C30 C14 coref-ident new mRNA synthesis for c-rel and p105/p50,c-rel and p105/p50 mRNA synthesis

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-122 Sentence denotes Biphasic control of nuclear factor-kappa B activation by the T cell receptor complex: role of tumor necrosis factor alpha.
S2 123-297 Sentence denotes The regulation of nuclear factor (NF)-kappa B activation by the T cell receptor (TcR)/CD3 complex in primary human T cells has been studied at various times after activation.
S3 298-426 Sentence denotes Only p50 NF-kappa B protein bound the kappa B element of interleukin-2 receptor (IL-2R) alpha chain promoter on resting T cells.
S4 427-558 Sentence denotes However, immediately after TcR/CD3 cross-linking (after approximately 1 h; immediate) binding of p50.p65 heterodimers was observed.
S5 559-738 Sentence denotes p50.c-rel heterodimers were also detected bound to this sequence at early time points (7-16 h; early), and both remained active at later time points (40 h; late) after activation.
S6 739-865 Sentence denotes This regulation takes place mainly at the level of nuclear translocation of p65 and c-rel, at immediate and early time points.
S7 866-976 Sentence denotes Activation also induced c-rel and p105/p50 mRNA synthesis, but not p65 mRNA whose expression was constitutive.
S8 977-1151 Sentence denotes Interestingly, all those early and late events, but not the immediate ones, were inhibited by a neutralizing anti-tumor necrosis factor alpha (TNF-alpha) monoclonal antibody.
S9 1152-1300 Sentence denotes Similarly, cycloheximide prevented the p65 and c-rel translocation and consequent formation of active binding heterodimers, at early and late times.
S10 1301-1432 Sentence denotes Cyclosporin A impaired not only early and late, but also immediate events; however, addition of TNF-alpha prevented all inhibition.
S11 1433-1650 Sentence denotes These results indicate that the regulation of NF-kappa B activation during T cell activation by TcR/CD3 signals is biphasic: TcR/CD3 triggers its immediate translocation, which is transient if no TNF-alpha is present.
S12 1651-1852 Sentence denotes TNF-alpha, therefore, emerges as the main factor responsible for a second phase of NF-kappa B regulation, controlling both translocation of p65 and c-rel, and new mRNA synthesis for c-rel and p105/p50.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 20-42 protein_molecule denotes nuclear factor-kappa B
T2 61-84 protein_complex denotes T cell receptor complex
T3 94-121 protein_molecule denotes tumor necrosis factor alpha
T4 141-168 protein_molecule denotes nuclear factor (NF)-kappa B
T5 187-202 protein_complex denotes T cell receptor
T6 238-245 cell_type denotes T cells
T7 303-325 protein_molecule denotes p50 NF-kappa B protein
T8 336-351 DNA_domain_or_region denotes kappa B element
T9 355-377 protein_molecule denotes interleukin-2 receptor
T10 379-384 protein_molecule denotes IL-2R
T11 418-425 cell_type denotes T cells
T12 454-461 protein_complex denotes TcR/CD3
T13 524-544 protein_complex denotes p50.p65 heterodimers
T14 559-581 protein_complex denotes p50.c-rel heterodimers
T15 790-811 other_name denotes nuclear translocation
T16 815-818 protein_subunit denotes p65
T17 823-828 protein_subunit denotes c-rel
T18 933-936 protein_subunit denotes p65
T19 1086-1091 protein_molecule denotes anti-
T20 1091-1118 protein_molecule denotes tumor necrosis factor alpha
T21 1191-1194 protein_subunit denotes p65
T22 1199-1204 protein_subunit denotes c-rel
T23 1205-1218 other_name denotes translocation
T24 1301-1314 other_organic_compound denotes Cyclosporin A
T25 1397-1406 protein_molecule denotes TNF-alpha
T26 1479-1489 protein_molecule denotes NF-kappa B
T27 1508-1525 other_name denotes T cell activation
T28 1529-1536 protein_complex denotes TcR/CD3
T29 1558-1565 protein_complex denotes TcR/CD3
T30 1629-1638 protein_molecule denotes TNF-alpha
T31 1651-1660 protein_molecule denotes TNF-alpha
T32 1734-1744 protein_molecule denotes NF-kappa B
T33 1791-1794 protein_subunit denotes p65
T34 1799-1804 protein_subunit denotes c-rel
T35 1814-1818 RNA_family_or_group denotes mRNA
T36 1833-1838 protein_subunit denotes c-rel
T37 1843-1851 protein_complex denotes p105/p50