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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 57-81 cell_type denotes steroid-responsive cells
T2 88-92 RNA denotes mRNA
T3 142-173 DNA denotes steroid-regulated gene networks
T4 177-202 protein denotes nuclear receptor proteins
T5 263-275 DNA denotes target genes
T6 486-490 RNA denotes mRNA
T7 512-533 protein denotes reverse transcriptase
T8 600-609 cell_type denotes thymocyte
T9 614-628 cell_type denotes prostate cells
T10 709-747 DNA denotes differentially expressed sequence tags
T11 749-754 DNA denotes DESTs
T12 765-790 cell_line denotes mouse thymocyte cell line
T13 791-799 cell_line denotes WEHI 7.2
T14 814-819 DNA denotes DESTs
T15 821-826 DNA denotes GIG10
T16 831-836 DNA denotes GIG18
T17 900-905 DNA denotes GIG10
T18 930-935 DNA denotes GIG18
T19 964-992 DNA denotes human expressed sequence tag
T20 1007-1030 cell_type denotes activated B lymphocytes
T21 1062-1067 DNA denotes DESTs
T22 1182-1188 RNA denotes 3' end
T23 1192-1231 RNA denotes prostatic spermine binding protein mRNA
T24 1241-1264 DNA denotes androgen-regulated gene
T25 1394-1399 DNA denotes DESTs

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-114 Sentence denotes Isolation of differentially expressed sequence tags from steroid-responsive cells using mRNA differential display.
S2 115-276 Sentence denotes Transcriptional control of steroid-regulated gene networks by nuclear receptor proteins results in the coordinate expression of a limited number of target genes.
S3 277-445 Sentence denotes Although much is known about the structure and function of steroid receptors, relatively few cell-specific steroid-regulated genes have been isolated and characterized.
S4 446-662 Sentence denotes In this paper we describe results using mRNA differential display reverse transcriptase PCR (DDPCR) to identify and isolate short cDNA sequence tags from thymocyte and prostate cells under various hormone conditions.
S5 663-800 Sentence denotes Using this technique we have isolated several differentially expressed sequence tags (DESTs) from the mouse thymocyte cell line WEHI 7.2.
S6 801-899 Sentence denotes Two of these DESTs, GIG10 and GIG18, are rapidly induced by dexamethasone within 2 h of treatment.
S7 900-1031 Sentence denotes GIG10 is a novel sequence and GIG18 is the mouse homologue of a human expressed sequence tag isolated from activated B lymphocytes.
S8 1032-1265 Sentence denotes We also used DDPCR to isolate DESTs from androgen-modulated rat ventral prostate tissue, one of which we characterized and found to correspond to the 3' end of prostatic spermine binding protein mRNA, a known androgen-regulated gene.
S9 1266-1510 Sentence denotes Modifications of the original DDPCR protocol, which we found can potentially decrease the frequency of isolating false-positive DESTs, are described and the merits of DDPCR, relative to other differential cDNA cloning strategies, are discussed.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 486-545 NP denotes mRNA differential display reverse transcriptase PCR (DDPCR)
C2 701-755 NP denotes several differentially expressed sequence tags (DESTs)
C4 808-819 NP denotes these DESTs
C3 801-819 NP denotes Two of these DESTs
C5 821-836 NP denotes GIG10 and GIG18
C6 1045-1050 NP denotes DDPCR
C7 1062-1067 NP denotes DESTs
C8 1128-1133 NP denotes which
C9 1178-1231 NP denotes the 3' end of prostatic spermine binding protein mRNA
C10 1233-1264 NP denotes a known androgen-regulated gene
C11 1266-1310 NP denotes Modifications of the original DDPCR protocol
C12 1312-1317 NP denotes which
C13 1433-1438 NP denotes DDPCR
R1 C4 C2 coref-ident these DESTs,several differentially expressed sequence tags (DESTs)
R2 C5 C3 coref-appos GIG10 and GIG18,Two of these DESTs
R3 C6 C1 coref-ident DDPCR,mRNA differential display reverse transcriptase PCR (DDPCR)
R4 C8 C7 coref-relat which,DESTs
R5 C10 C9 coref-appos a known androgen-regulated gene,the 3' end of prostatic spermine binding protein mRNA
R6 C12 C11 coref-relat which,Modifications of the original DDPCR protocol
R7 C13 C6 coref-ident DDPCR,DDPCR

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 57-81 cell_type denotes steroid-responsive cells
T2 88-92 RNA_family_or_group denotes mRNA
T3 142-173 DNA_family_or_group denotes steroid-regulated gene networks
T4 177-202 protein_family_or_group denotes nuclear receptor proteins
T5 263-275 DNA_family_or_group denotes target genes
T6 486-490 RNA_family_or_group denotes mRNA
T7 512-533 protein_molecule denotes reverse transcriptase
T8 539-544 other_name denotes DDPCR
T9 600-609 cell_type denotes thymocyte
T10 614-628 cell_type denotes prostate cells
T11 643-661 other_name denotes hormone conditions
T12 709-747 DNA_domain_or_region denotes differentially expressed sequence tags
T13 749-754 DNA_domain_or_region denotes DESTs
T14 765-790 cell_line denotes mouse thymocyte cell line
T15 791-799 cell_line denotes WEHI 7.2
T16 814-819 DNA_domain_or_region denotes DESTs
T17 821-826 DNA_domain_or_region denotes GIG10
T18 831-836 DNA_domain_or_region denotes GIG18
T19 900-905 DNA_domain_or_region denotes GIG10
T20 930-935 DNA_domain_or_region denotes GIG18
T21 964-992 DNA_domain_or_region denotes human expressed sequence tag
T22 1007-1030 cell_type denotes activated B lymphocytes
T23 1045-1050 other_name denotes DDPCR
T24 1062-1067 DNA_domain_or_region denotes DESTs
T25 1073-1119 tissue denotes androgen-modulated rat ventral prostate tissue
T26 1182-1188 RNA_domain_or_region denotes 3' end
T27 1192-1226 protein_molecule denotes prostatic spermine binding protein
T28 1241-1264 DNA_family_or_group denotes androgen-regulated gene
T29 1296-1301 other_name denotes DDPCR
T30 1394-1399 DNA_domain_or_region denotes DESTs
T31 1433-1438 other_name denotes DDPCR
T32 1471-1494 other_name denotes cDNA cloning strategies