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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 141-152 cell_line denotes U-937 cells
T2 357-379 protein denotes monocyte-macrophage Ag
T3 381-385 protein denotes CD14
T4 399-419 protein denotes affinity Fc receptor
T5 424-427 protein denotes IgE
T6 429-433 protein denotes CD23
T7 518-540 cell_line denotes human U-937 monoblasts
T8 577-581 protein denotes CD14
T9 586-595 RNA denotes CD23 mRNA
T10 669-678 RNA denotes CD14 mRNA
T11 764-773 RNA denotes CD14 mRNA
T12 875-879 protein denotes CD14
T13 957-961 protein denotes CD23
T14 1014-1025 cell_line denotes U-937 cells
T15 1079-1088 RNA denotes CD23 mRNA
T16 1226-1230 protein denotes CD14

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 30-40 NP denotes vitamin D3
C3 45-58 NP denotes retinoic acid
C1 0-58 NP denotes Functional antagonism between vitamin D3 and retinoic acid
C5 80-84 NP denotes CD14
C7 89-93 NP denotes CD23
C6 89-104 NP denotes CD23 expression
C4 80-104 NP denotes CD14 and CD23 expression
C8 141-152 NP denotes U-937 cells
C9 154-197 NP denotes 1,25 alpha-Dihydroxicholecalciferol (VitD3)
C10 202-220 NP denotes retinoic acid (RA)
C11 381-385 NP denotes CD14
C12 429-433 NP denotes CD23
C13 467-473 NP denotes VitD3-
C14 478-481 NP denotes RA-
C15 542-545 NP denotes PMA
C16 577-581 NP denotes CD14
C17 621-626 NP denotes VitD3
C18 875-890 NP denotes CD14 expression
C19 892-897 NP denotes VitD3
C20 934-938 NP denotes PMA-
C21 944-947 NP denotes RA-
C23 1037-1039 NP denotes RA
C22 1014-1039 NP denotes U-937 cells induced by RA
C24 1059-1064 NP denotes their
C25 1079-1100 NP denotes CD23 mRNA and protein
C26 1110-1114 NP denotes they
C27 1199-1205 NP denotes VitD3-
C29 1214-1218 NP denotes PMA-
C28 1210-1241 NP denotes the PMA-induced CD14 expression
C30 1289-1292 NP denotes RA-
C31 1355-1399 NP denotes a functional antagonism between VitD3 and RA
C32 1459-1500 NP denotes certain immune and inflammatory responses
C33 1509-1514 NP denotes their
C35 1534-1538 NP denotes CD14
C36 1543-1563 NP denotes CD23 gene expression
C34 1534-1563 NP denotes CD14 and CD23 gene expression
R1 C9 C2 coref-other "1,25 alpha-Dihydroxicholecalciferol (VitD3)",vitamin D3
R2 C10 C3 coref-ident retinoic acid (RA),retinoic acid
R3 C11 C5 coref-ident CD14,CD14
R4 C12 C7 coref-ident CD23,CD23
R5 C13 C2 coref-ident VitD3-,vitamin D3
R6 C14 C10 coref-ident RA-,retinoic acid (RA)
R7 C16 C11 coref-ident CD14,CD14
R8 C17 C13 coref-ident VitD3,VitD3-
R9 C19 C17 coref-ident VitD3,VitD3
R10 C20 C15 coref-ident PMA-,PMA
R11 C21 C10 coref-ident RA-,retinoic acid (RA)
R12 C23 C21 coref-ident RA,RA-
R13 C22 C8 coref-other U-937 cells induced by RA,U-937 cells
R14 C24 C22 coref-pron their,U-937 cells induced by RA
R15 C25 C34 coref-ident CD23 mRNA and protein,CD14 and CD23 gene expression
R16 C26 C23 coref-pron they,RA
R17 C27 C19 coref-ident VitD3-,VitD3
R18 C29 C20 coref-ident PMA-,PMA-
R19 C28 C23 coref-other the PMA-induced CD14 expression,RA
R20 C30 C23 coref-ident RA-,RA
R21 C31 C1 coref-ident a functional antagonism between VitD3 and RA,Functional antagonism between vitamin D3 and retinoic acid
R22 C33 C32 coref-pron their,certain immune and inflammatory responses
R23 C35 C16 coref-ident CD14,CD14
R24 C36 C6 coref-ident CD23 gene expression,CD23 expression
R25 C34 C4 coref-ident CD14 and CD23 gene expression,CD14 and CD23 expression

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 0-10 cui:C0205245 denotes Functional
E2-ti-1 11-21 cui:C0680242 denotes antagonism
E3-ti-1 30-40 cui:C0008318 denotes vitamin D3
E4-ti-1 45-58 cui:C0040845 denotes retinoic acid
E5-ti-1 66-76 cui:C0851285 denotes regulation
E6-ti-1 80-84 cui:C1367477 denotes CD14
E7-ti-1 89-93 cui:C0123242 denotes CD23
E8-ti-1 94-104 cui:C0185117 denotes expression
E9-ti-1 112-121 cui:C0026473 denotes monocytic
E10-ti-1 141-152 cui:C0301863 denotes U-937 cells
T1 66-76 INTERACTS_WITH denotes regulation
T2 66-76 INTERACTS_WITH denotes regulation
T3 66-76 INTERACTS_WITH denotes regulation
T4 66-76 INTERACTS_WITH denotes regulation
E1-ab-1 159-164 cui:C0439095 denotes alpha
E2-ab-1 191-196 entrez:1735 denotes VitD3
E3-ab-1 202-215 cui:C0040845 denotes retinoic acid
E4-ab-1 253-266 cui:C0334094 denotes proliferation
E5-ab-1 290-297 cui:C0443302 denotes several
E6-ab-1 298-308 cui:C0007634 denotes cell types
E1-ab-2 315-320 cui:C0030351 denotes paper
E2-ab-2 339-349 cui:C0185117 denotes expression
E3-ab-2 357-376 cui:C1148382 denotes monocyte-macrophage
E4-ab-2 381-385 cui:C1367477 denotes CD14
E5-ab-2 395-398 cui:C0205251 denotes low
E6-ab-2 408-419 cui:C0034805 denotes Fc receptor
E7-ab-2 424-427 entrez:3497 denotes IgE
E8-ab-2 429-433 cui:C0123242 denotes CD23
E9-ab-2 467-472 entrez:1735 denotes VitD3
E10-ab-2 478-480 cui:C0040845 denotes RA
E11-ab-2 481-488 cui:C0205263 denotes induced
E12-ab-2 489-498 cui:C0026473 denotes monocytic
E13-ab-2 518-523 cui:C0020114 denotes human
E14-ab-2 530-540 cui:C0229655 denotes monoblasts
T5 450-459 INTERACTS_WITH denotes regulated
T6 450-459 INTERACTS_WITH denotes regulated
E1-ab-3 542-545 cui:C0048451 denotes PMA
E2-ab-3 558-568 cui:C0185117 denotes expression
E3-ab-3 577-581 cui:C1367477 denotes CD14
E4-ab-3 586-590 cui:C0123242 denotes CD23
E5-ab-3 591-595 cui:C0035696 denotes mRNA
E6-ab-3 600-607 cui:C0033684 denotes protein
T7 546-553 STIMULATES denotes induced
T8 546-553 STIMULATES denotes induced
T9 546-553 STIMULATES denotes induced
E1-ab-4 621-626 entrez:1735 denotes VitD3
E2-ab-4 647-654 cui:C1515568 denotes de novo
E3-ab-4 655-665 cui:C0185117 denotes expression
E4-ab-4 669-673 cui:C1367477 denotes CD14
E5-ab-4 674-678 cui:C0035696 denotes mRNA
E6-ab-4 683-690 cui:C0033684 denotes protein
T10 635-642 STIMULATES denotes induced
T11 635-642 STIMULATES denotes induced
E1-ab-5 696-704 cui:C0442796 denotes addition
E2-ab-5 708-721 cui:C0010572 denotes cycloheximide
E3-ab-5 745-750 entrez:1735 denotes VitD3
E4-ab-5 751-760 cui:C0857127 denotes induction
E5-ab-5 764-768 cui:C1367477 denotes CD14
E6-ab-5 769-784 cui:C1515670 denotes mRNA expression
E7-ab-5 806-815 cui:C0857127 denotes induction
E8-ab-5 841-858 cui:C0597295 denotes protein synthesis
T12 751-760 STIMULATES denotes induction
T13 820-829 AUGMENTS denotes dependent
E1-ab-6 866-874 cui:C0205263 denotes inducing
E2-ab-6 875-879 cui:C1367477 denotes CD14
E3-ab-6 880-890 cui:C0185117 denotes expression
E4-ab-6 892-897 entrez:1735 denotes VitD3
E5-ab-6 927-932 cui:C0205112 denotes basal
E6-ab-6 934-937 cui:C0048451 denotes PMA
E7-ab-6 944-946 cui:C0040845 denotes RA
E8-ab-6 957-961 cui:C0123242 denotes CD23
E9-ab-6 962-972 cui:C0185117 denotes expression
E10-ab-6 978-992 cui:C1512045 denotes dose-dependent
T14 912-922 INHIBITS denotes suppressed
T15 912-922 INHIBITS denotes suppressed
E1-ab-7 1014-1025 cui:C0301863 denotes U-937 cells
E2-ab-7 1037-1039 cui:C0040845 denotes RA
E3-ab-7 1065-1075 cui:C0185117 denotes expression
E4-ab-7 1079-1083 cui:C0123242 denotes CD23
E5-ab-7 1084-1088 cui:C0035696 denotes mRNA
E6-ab-7 1093-1100 cui:C0033684 denotes protein
E7-ab-7 1144-1148 cui:C1367477 denotes CD14
E8-ab-7 1149-1161 cui:C0699040 denotes cell surface
E9-ab-7 1165-1180 cui:C1515670 denotes mRNA expression
T16 1026-1033 AUGMENTS denotes induced
T17 1049-1058 STIMULATES denotes increased
E1-ab-8 1199-1204 entrez:1735 denotes VitD3
E2-ab-8 1214-1217 cui:C0048451 denotes PMA
E3-ab-8 1218-1225 cui:C0205263 denotes induced
E4-ab-8 1226-1230 cui:C1367477 denotes CD14
E5-ab-8 1231-1241 cui:C0185117 denotes expression
E6-ab-8 1261-1269 cui:C0442043 denotes temporal
E7-ab-8 1289-1291 cui:C0040845 denotes RA
E8-ab-8 1292-1299 cui:C0205263 denotes induced
E1-ab-9 1321-1328 cui:C1274040 denotes results
E2-ab-9 1357-1367 cui:C0205245 denotes functional
E3-ab-9 1368-1378 cui:C0680242 denotes antagonism
E4-ab-9 1387-1392 entrez:1735 denotes VitD3
E5-ab-9 1397-1399 cui:C0040845 denotes RA
E6-ab-9 1445-1455 cui:C0851285 denotes regulation
E7-ab-9 1459-1466 cui:C0205423 denotes certain
E8-ab-9 1467-1473 cui:C0439662 denotes immune
E9-ab-9 1478-1500 cui:C1155266 denotes inflammatory responses
E10-ab-9 1515-1522 cui:C0439850 denotes inverse
E11-ab-9 1523-1530 cui:C1280500 denotes effects
E12-ab-9 1534-1538 cui:C1367477 denotes CD14
E13-ab-9 1543-1547 cui:C0123242 denotes CD23
E14-ab-9 1548-1563 cui:C0017262 denotes gene expression
T18 1523-1530 INTERACTS_WITH denotes effects
T19 1523-1530 INTERACTS_WITH denotes effects
T20 1523-1530 INTERACTS_WITH denotes effects
T21 1523-1530 INTERACTS_WITH denotes effects
R1 E4-ti-1 T1 subjectOf retinoic acid,regulation
R2 E6-ti-1 T1 objectOf CD14,regulation
R3 E4-ti-1 T2 subjectOf retinoic acid,regulation
R4 E7-ti-1 T2 objectOf CD23,regulation
R5 E3-ti-1 T3 subjectOf vitamin D3,regulation
R6 E6-ti-1 T3 objectOf CD14,regulation
R7 E3-ti-1 T4 subjectOf vitamin D3,regulation
R8 E7-ti-1 T4 objectOf CD23,regulation
R9 E8-ab-2 T5 subjectOf CD23,regulated
R10 E9-ab-2 T5 objectOf VitD3,regulated
R11 E8-ab-2 T6 subjectOf CD23,regulated
R12 E10-ab-2 T6 objectOf RA,regulated
R13 E1-ab-3 T7 subjectOf PMA,induced
R14 E3-ab-3 T7 objectOf CD14,induced
R15 E1-ab-3 T8 subjectOf PMA,induced
R16 E6-ab-3 T8 objectOf protein,induced
R17 E1-ab-3 T9 subjectOf PMA,induced
R18 E4-ab-3 T9 objectOf CD23,induced
R19 E1-ab-4 T10 subjectOf VitD3,induced
R20 E4-ab-4 T10 objectOf CD14,induced
R21 E1-ab-4 T11 subjectOf VitD3,induced
R22 E6-ab-4 T11 objectOf protein,induced
R23 E3-ab-5 T12 subjectOf VitD3,induction
R24 E5-ab-5 T12 objectOf CD14,induction
R25 E2-ab-5 T13 subjectOf cycloheximide,dependent
R26 E8-ab-5 T13 objectOf protein synthesis,dependent
R27 E4-ab-6 T14 subjectOf VitD3,suppressed
R28 E6-ab-6 T14 objectOf PMA,suppressed
R29 E4-ab-6 T15 subjectOf VitD3,suppressed
R30 E8-ab-6 T15 objectOf CD23,suppressed
R31 E2-ab-7 T16 subjectOf RA,induced
R32 E1-ab-7 T16 objectOf U-937 cells,induced
R33 E2-ab-7 T17 subjectOf RA,increased
R34 E4-ab-7 T17 objectOf CD23,increased
R35 E5-ab-9 T18 subjectOf RA,effects
R36 E12-ab-9 T18 objectOf CD14,effects
R37 E5-ab-9 T19 subjectOf RA,effects
R38 E13-ab-9 T19 objectOf CD23,effects
R39 E4-ab-9 T20 subjectOf VitD3,effects
R40 E12-ab-9 T20 objectOf CD14,effects
R41 E4-ab-9 T21 subjectOf VitD3,effects
R42 E13-ab-9 T21 objectOf CD23,effects

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-153 Sentence denotes Functional antagonism between vitamin D3 and retinoic acid in the regulation of CD14 and CD23 expression during monocytic differentiation of U-937 cells.
S2 154-309 Sentence denotes 1,25 alpha-Dihydroxicholecalciferol (VitD3) and retinoic acid (RA) are important regulators of the proliferation and differentiation of several cell types.
S3 310-541 Sentence denotes This paper describes how the expression of the monocyte-macrophage Ag, CD14, and the low affinity Fc receptor for IgE, CD23, were inversely regulated during VitD3- and RA-induced monocytic differentiation of human U-937 monoblasts.
S4 542-608 Sentence denotes PMA induced the expression of both CD14 and CD23 mRNA and protein.
S5 609-691 Sentence denotes Exposure to VitD3 rapidly induced the de novo expression of CD14 mRNA and protein.
S6 692-859 Sentence denotes The addition of cycloheximide completely blocked the VitD3 induction of CD14 mRNA expression, indicating that the induction was dependent on ongoing protein synthesis.
S7 860-1000 Sentence denotes While inducing CD14 expression, VitD3 concomitantly suppressed the basal, PMA-, and RA-inducible CD23 expression in a dose-dependent manner.
S8 1001-1181 Sentence denotes In contrast, U-937 cells induced by RA strongly increased their expression of CD23 mRNA and protein, whereas they completely lacked detectable CD14 cell surface or mRNA expression.
S9 1182-1316 Sentence denotes Furthermore, the VitD3- and the PMA-induced CD14 expression was inhibited as a temporal consequence of the RA-induced differentiation.
S10 1317-1564 Sentence denotes The results suggest that there exists a functional antagonism between VitD3 and RA that may have important implications for the regulation of certain immune and inflammatory responses through their inverse effects on CD14 and CD23 gene expression.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 30-40 lipid denotes vitamin D3
T2 45-58 other_organic_compound denotes retinoic acid
T3 112-137 other_name denotes monocytic differentiation
T4 141-152 cell_line denotes U-937 cells
T5 154-189 lipid denotes 1,25 alpha-Dihydroxicholecalciferol
T6 191-196 lipid denotes VitD3
T7 202-215 other_organic_compound denotes retinoic acid
T8 217-219 other_organic_compound denotes RA
T9 357-379 protein_family_or_group denotes monocyte-macrophage Ag
T10 381-385 protein_molecule denotes CD14
T11 399-419 protein_family_or_group denotes affinity Fc receptor
T12 424-427 protein_family_or_group denotes IgE
T13 429-433 protein_molecule denotes CD23
T14 467-472 lipid denotes VitD3
T15 518-540 cell_line denotes human U-937 monoblasts
T16 542-545 other_organic_compound denotes PMA
T17 577-581 RNA_N/A denotes CD14
T18 586-595 RNA_molecule denotes CD23 mRNA
T19 621-626 lipid denotes VitD3
T20 669-678 RNA_molecule denotes CD14 mRNA
T21 708-721 other_organic_compound denotes cycloheximide
T22 745-750 lipid denotes VitD3
T23 764-773 RNA_molecule denotes CD14 mRNA
T24 875-879 protein_molecule denotes CD14
T25 892-897 lipid denotes VitD3
T26 957-961 protein_molecule denotes CD23
T27 978-999 other_name denotes dose-dependent manner
T28 1014-1025 cell_line denotes U-937 cells
T29 1037-1039 other_organic_compound denotes RA
T30 1079-1083 protein_molecule denotes CD23
T31 1199-1204 other_organic_compound denotes VitD3
T32 1214-1217 other_organic_compound denotes PMA
T33 1226-1230 protein_molecule denotes CD14
T34 1387-1392 lipid denotes VitD3
T35 1397-1399 other_organic_compound denotes RA

metamap-sample

Id Subject Object Predicate Lexical cue
T1 1398-1400 C0040845 denotes A
T2 1290-1292 C0040845 denotes A-
T3 1038-1040 C0040845 denotes A
T4 945-947 C0040845 denotes A-
T5 479-481 C0040845 denotes A-
T6 203-216 C0040845 denotes etinoic acid
T7 46-59 C0040845 denotes etinoic acid
T8 358-366 C0026473 denotes onocyte-
T9 490-499 C0026473 denotes onocytic
T10 113-122 C0026473 denotes onocytic
T11 31-41 C0008318 denotes itamin D3
T12 1301-1316 C0007589 denotes ifferentiation.
T13 500-515 C0007589 denotes ifferentiation
T14 272-287 C0007589 denotes ifferentiation
T15 123-138 C0007589 denotes ifferentiation
T16 1232-1242 C0185117 denotes xpression
T17 559-569 C0185117 denotes xpression
T18 340-350 C0185117 denotes xpression
T19 95-105 C0185117 denotes xpression
T20 1369-1379 C0680242 denotes ntagonism
T21 12-22 C0680242 denotes ntagonism
T22 1535-1539 C1367477 denotes D14
T23 1227-1231 C1367477 denotes D14
T24 1145-1149 C1367477 denotes D14
T25 876-880 C1367477 denotes D14
T26 765-769 C1367477 denotes D14
T27 670-674 C1367477 denotes D14
T28 578-582 C1367477 denotes D14
T29 382-386 C1367477 denotes D14,
T30 81-85 C1367477 denotes D14
T31 31-41 C3265062 denotes itamin D3
T32 1358-1368 C2700217 denotes unctional
T33 1-11 C2700217 denotes unctional
T34 1446-1456 C1327622 denotes egulation
T35 67-77 C1327622 denotes egulation
T36 1215-1218 C0039654 denotes MA-
T37 935-938 C0039654 denotes MA-
T38 543-546 C0039654 denotes MA
T39 1027-1034 C0205263 denotes nduced
T40 867-875 C0205263 denotes nducing
T41 636-643 C0205263 denotes nduced
T42 547-553 C0205263 denotes nduced
T43 482-489 C0205263 denotes nduced
T44 519-524 C0086418 denotes uman
T45 1388-1393 C0523979 denotes itD3
T46 1200-1205 C0523979 denotes itD3-
T47 893-898 C0523979 denotes itD3
T48 746-751 C0523979 denotes itD3
T49 622-627 C0523979 denotes itD3
T50 468-473 C0523979 denotes itD3-
T51 192-197 C0523979 denotes itD3)
T52 1094-1101 C0033684 denotes rotein,
T53 684-691 C0033684 denotes rotein.
T54 601-608 C0033684 denotes rotein.
T55 842-859 C0597295 denotes rotein synthesis.
T56 709-722 C0010572 denotes ycloheximide
T57 1166-1181 C1515670 denotes RNA expression.
T58 770-785 C1515670 denotes RNA expression,
T59 316-321 C0030351 denotes aper
T60 592-596 C0035696 denotes RNA
T61 367-377 C0024432 denotes acrophage
T62 948-957 C0669372 denotes nducible
T63 1549-1564 C0017262 denotes ene expression.
T64 451-460 C0851285 denotes egulated
T65 1116-1126 C0205197 denotes ompletely
T66 723-733 C0205197 denotes ompletely
T67 155-156 C2827734 denotes ,
T68 734-741 C0332206 denotes locked
T69 1005-1013 C1979874 denotes ontrast,
T70 1349-1355 C2987476 denotes xists
T71 1050-1059 C0205217 denotes ncreased
T72 913-923 C1260953 denotes uppressed
T73 1330-1337 C1705535 denotes uggest
T74 1322-1329 C2825142 denotes esults
T75 1127-1133 C0332268 denotes acked
T76 1150-1162 C0699040 denotes ell surface
T77 610-621 C0332157 denotes xposure to
T78 1155-1162 C0205148 denotes urface
T79 1479-1500 C1155266 denotes nflammatory responses
T80 697-705 C1883712 denotes ddition
T81 821-830 C0851827 denotes ependent
T82 236-246 C0182953 denotes egulators
T83 1271-1285 C0686907 denotes onsequence of
T84 409-411 C2983605 denotes c
T85 1247-1256 C0311403 denotes nhibited
T86 1262-1270 C0442043 denotes emporal
T87 928-933 C0205112 denotes asal,
T88 1145-1154 C0947286 denotes D14 cell
T89 160-165 C2003941 denotes lpha-
T90 648-655 C1515568 denotes e novo
T91 628-635 C1637379 denotes apidly
T92 834-841 C0549178 denotes ngoing
T93 979-993 C1512045 denotes ose-dependent
T94 254-267 C0334094 denotes roliferation
T95 1524-1531 C1280500 denotes ffects
T96 1516-1523 C0439850 denotes nverse
T97 1468-1474 C0439662 denotes mmune
T98 531-541 C1142102 denotes onoblasts.
T99 1460-1467 C0205423 denotes ertain