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PubMed:7530239 JSONTXT

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DisGeNET

Id Subject Object Predicate Lexical cue
T0 13-19 gene:3383 denotes ICAM-1
T1 41-62 disease:C0023493 denotes human T-cell leukemia
T2 13-19 gene:3383 denotes ICAM-1
T3 131-152 disease:C0023492 denotes adult-T-cell-leukemia
T4 13-19 gene:3383 denotes ICAM-1
T5 131-152 disease:C0023493 denotes adult-T-cell-leukemia
T6 24-29 gene:965 denotes LFA-3
T7 41-62 disease:C0023493 denotes human T-cell leukemia
T8 33-37 gene:6900 denotes Tax1
T9 41-62 disease:C0023493 denotes human T-cell leukemia
T10 112-118 gene:3383 denotes ICAM-1
T11 41-62 disease:C0023493 denotes human T-cell leukemia
T12 112-118 gene:3383 denotes ICAM-1
T13 131-152 disease:C0023492 denotes adult-T-cell-leukemia
T14 112-118 gene:3383 denotes ICAM-1
T15 131-152 disease:C0023493 denotes adult-T-cell-leukemia
T16 122-127 gene:3683 denotes LFA-1
T17 131-152 disease:C0023492 denotes adult-T-cell-leukemia
T18 122-127 gene:3683 denotes LFA-1
T19 131-152 disease:C0023493 denotes adult-T-cell-leukemia
T20 122-127 gene:3689 denotes LFA-1
T21 131-152 disease:C0023492 denotes adult-T-cell-leukemia
T22 122-127 gene:3689 denotes LFA-1
T23 131-152 disease:C0023493 denotes adult-T-cell-leukemia
R1 T0 T1 associated_with ICAM-1,human T-cell leukemia
R2 T2 T3 associated_with ICAM-1,adult-T-cell-leukemia
R3 T4 T5 associated_with ICAM-1,adult-T-cell-leukemia
R4 T6 T7 associated_with LFA-3,human T-cell leukemia
R5 T8 T9 associated_with Tax1,human T-cell leukemia
R6 T10 T11 associated_with ICAM-1,human T-cell leukemia
R7 T12 T13 associated_with ICAM-1,adult-T-cell-leukemia
R8 T14 T15 associated_with ICAM-1,adult-T-cell-leukemia
R9 T16 T17 associated_with LFA-1,adult-T-cell-leukemia
R10 T18 T19 associated_with LFA-1,adult-T-cell-leukemia
R11 T20 T21 associated_with LFA-1,adult-T-cell-leukemia
R12 T22 T23 associated_with LFA-1,adult-T-cell-leukemia

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 13-19 protein denotes ICAM-1
T2 24-29 protein denotes LFA-3
T3 33-37 protein denotes Tax1
T4 112-118 protein denotes ICAM-1
T5 122-127 protein denotes LFA-1
T6 131-163 cell_line denotes adult-T-cell-leukemia cell lines
T7 223-234 protein denotes HTLV-I TaxI
T8 259-265 protein denotes ICAM-I
T9 270-275 protein denotes LFA-3
T10 279-292 cell_type denotes human T cells
T11 357-363 protein denotes ICAM-I
T12 368-373 protein denotes LFA-I
T13 377-399 cell_line denotes ATL-derived cell lines
T14 414-418 protein denotes TaxI
T15 424-448 cell_line denotes human T-cell line Jurkat
T16 462-471 DNA denotes TaxI gene
T17 482-506 DNA denotes metallothionein promoter
T18 527-531 RNA denotes mRNA
T19 558-564 protein denotes ICAM-I
T20 582-587 protein denotes LFA-3
T21 591-595 protein denotes TaxI
T22 702-717 DNA denotes ICAM-I promoter
T23 721-725 protein denotes TaxI
T24 768-790 DNA denotes CAT reporter construct
T25 800-815 DNA denotes ICAM-I promoter
T26 822-829 DNA denotes plasmid
T27 841-845 protein denotes TaxI
T28 883-889 protein denotes ICAM-I
T29 893-898 protein denotes LFA-I
T30 902-918 cell_line denotes 4 ATL cell lines
T31 938-949 RNA denotes ICAM-I mRNA
T32 967-971 cell_line denotes MT-I
T33 1012-1024 DNA denotes CAT reporter
T34 1034-1049 DNA denotes ICAM-I promoter
T35 1066-1070 cell_line denotes MT-I
T36 1103-1107 cell_line denotes MT-I
T37 1131-1140 protein denotes IFN-gamma
T38 1166-1172 protein denotes ICAM-I
T39 1192-1214 protein denotes transcriptional factor
T40 1246-1257 DNA denotes ICAM-I gene
T41 1278-1282 cell_line denotes MT-I
T42 1320-1334 cell_line denotes ATL cell lines
T43 1336-1342 cell_line denotes TL-OmI
T44 1344-1348 cell_line denotes H582
T45 1350-1356 cell_line denotes HuT102
T46 1384-1388 RNA denotes mRNA
T47 1397-1413 protein denotes LFA-I beta chain
T48 1415-1419 protein denotes CD18
T49 1422-1426 cell_line denotes H582
T50 1431-1437 cell_line denotes HuT102
T51 1465-1495 RNA denotes LFA-I alpha chain (CDIIa) mRNA
T52 1534-1551 DNA denotes CAT reporter gene
T53 1561-1574 DNA denotes CD18 promoter
T54 1635-1657 protein denotes transcriptional factor
T55 1675-1679 protein denotes CD18

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
7530239-0#13#19#gene3383 13-19 gene3383 denotes ICAM-1
7530239-0#33#37#gene6900 33-37 gene6900 denotes Tax1
7530239-0#112#118#gene3383 112-118 gene3383 denotes ICAM-1
7530239-0#41#62#diseaseC0023493 41-62 diseaseC0023493 denotes human T-cell leukemia
13#19#gene338341#62#diseaseC0023493 7530239-0#13#19#gene3383 7530239-0#41#62#diseaseC0023493 associated_with ICAM-1,human T-cell leukemia
33#37#gene690041#62#diseaseC0023493 7530239-0#33#37#gene6900 7530239-0#41#62#diseaseC0023493 associated_with Tax1,human T-cell leukemia
112#118#gene338341#62#diseaseC0023493 7530239-0#112#118#gene3383 7530239-0#41#62#diseaseC0023493 associated_with ICAM-1,human T-cell leukemia

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 13-19 NP denotes ICAM-1
C2 24-29 NP denotes LFA-3
C3 33-75 NP denotes Tax1 of human T-cell leukemia virus type 1
C5 112-118 NP denotes ICAM-1
C6 122-127 NP denotes LFA-1
C7 131-163 NP denotes adult-T-cell-leukemia cell lines
C4 80-163 NP denotes mechanism of down-regulation of ICAM-1 or LFA-1 in adult-T-cell-leukemia cell lines
C8 223-234 NP denotes HTLV-I TaxI
C9 259-265 NP denotes ICAM-I
C10 270-275 NP denotes LFA-3
C11 279-292 NP denotes human T cells
C12 357-363 NP denotes ICAM-I
C13 368-373 NP denotes LFA-I
C14 377-399 NP denotes ATL-derived cell lines
C16 414-418 NP denotes TaxI
C17 422-448 NP denotes a human T-cell line Jurkat
C15 401-448 NP denotes Induction of TaxI in a human T-cell line Jurkat
C18 458-471 NP denotes the TaxI gene
C19 558-564 NP denotes ICAM-I
C20 582-587 NP denotes LFA-3
C21 591-605 NP denotes TaxI induction
C22 721-725 NP denotes TaxI
C24 796-815 NP denotes the ICAM-I promoter
C23 766-815 NP denotes a CAT reporter construct with the ICAM-I promoter
C25 841-845 NP denotes TaxI
C27 883-889 NP denotes ICAM-I
C28 893-898 NP denotes LFA-I
C26 847-918 NP denotes The mechanism of down-regulation of ICAM-I or LFA-I in 4 ATL cell lines
C29 967-971 NP denotes MT-I
C31 1030-1049 NP denotes the ICAM-I promoter
C30 1008-1049 NP denotes The CAT reporter with the ICAM-I promoter
C32 1066-1070 NP denotes MT-I
C33 1103-1107 NP denotes MT-I
C34 1166-1172 NP denotes ICAM-I
C35 1246-1257 NP denotes ICAM-I gene
C36 1278-1282 NP denotes MT-I
C37 1308-1357 NP denotes Three other ATL cell lines (TL-OmI, H582, HuT102)
C38 1591-1604 NP denotes the 3 of them
R1 C5 C1 coref-ident ICAM-1,ICAM-1
R2 C8 C3 coref-ident HTLV-I TaxI,Tax1 of human T-cell leukemia virus type 1
R3 C9 C5 coref-ident ICAM-I,ICAM-1
R4 C10 C2 coref-ident LFA-3,LFA-3
R5 C12 C9 coref-ident ICAM-I,ICAM-I
R6 C13 C6 coref-ident LFA-I,LFA-1
R7 C14 C7 coref-ident ATL-derived cell lines,adult-T-cell-leukemia cell lines
R8 C17 C11 coref-ident a human T-cell line Jurkat,human T cells
R9 C18 C16 coref-ident the TaxI gene,TaxI
R10 C19 C12 coref-ident ICAM-I,ICAM-I
R11 C20 C10 coref-ident LFA-3,LFA-3
R12 C21 C15 coref-ident TaxI induction,Induction of TaxI in a human T-cell line Jurkat
R13 C22 C16 coref-ident TaxI,TaxI
R14 C25 C22 coref-ident TaxI,TaxI
R15 C27 C19 coref-ident ICAM-I,ICAM-I
R16 C28 C13 coref-ident LFA-I,LFA-I
R17 C26 C4 coref-ident The mechanism of down-regulation of ICAM-I or LFA-I in 4 ATL cell lines,mechanism of down-regulation of ICAM-1 or LFA-1 in adult-T-cell-leukemia cell lines
R18 C31 C24 coref-ident the ICAM-I promoter,the ICAM-I promoter
R19 C30 C23 coref-ident The CAT reporter with the ICAM-I promoter,a CAT reporter construct with the ICAM-I promoter
R20 C32 C29 coref-ident MT-I,MT-I
R21 C33 C32 coref-ident MT-I,MT-I
R22 C34 C27 coref-ident ICAM-I,ICAM-I
R23 C35 C34 coref-ident ICAM-I gene,ICAM-I
R24 C36 C33 coref-ident MT-I,MT-I
R25 C38 C37 coref-ident the 3 of them,"Three other ATL cell lines (TL-OmI, H582, HuT102)"

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-164 Sentence denotes Induction of ICAM-1 and LFA-3 by Tax1 of human T-cell leukemia virus type 1 and mechanism of down-regulation of ICAM-1 or LFA-1 in adult-T-cell-leukemia cell lines.
S2 165-400 Sentence denotes The present study was undertaken to determine the role of HTLV-I TaxI in the up-regulation of ICAM-I and LFA-3 in human T cells transformed with HTLV-I and the mechanism of down-regulation of ICAM-I and LFA-I in ATL-derived cell lines.
S3 401-565 Sentence denotes Induction of TaxI in a human T-cell line Jurkat carrying the TaxI gene under the metallothionein promoter led to increases in mRNA and surface expression of ICAM-I.
S4 566-678 Sentence denotes The response of LFA-3 to TaxI induction was, on the other hand, relatively slow and weak, and might be indirect.
S5 679-846 Sentence denotes Transactivation of the ICAM-I promoter by TaxI was further shown by co-transfection of a CAT reporter construct with the ICAM-I promoter and a plasmid expressing TaxI.
S6 847-937 Sentence denotes The mechanism of down-regulation of ICAM-I or LFA-I in 4 ATL cell lines was next examined.
S7 938-1007 Sentence denotes ICAM-I mRNA was quite low in MT-I, but no genomic changes were found.
S8 1008-1071 Sentence denotes The CAT reporter with the ICAM-I promoter was inactive in MT-I.
S9 1072-1173 Sentence denotes Finally, combined treatment of MT-I with 5-azacytidine and IFN-gamma induced re-expression of ICAM-I.
S10 1174-1307 Sentence denotes Collectively, (a) transcriptional factor(s) necessary for expression of ICAM-I gene may be repressed in MT-I through DNA methylation.
S11 1308-1421 Sentence denotes Three other ATL cell lines (TL-OmI, H582, HuT102) were found to have little mRNA for the LFA-I beta chain (CD18).
S12 1422-1496 Sentence denotes H582 and HuT102 were also negative for the LFA-I alpha chain (CDIIa) mRNA.
S13 1497-1691 Sentence denotes No genomic changes were found, and a CAT reporter gene with the CD18 promoter was inactive in the 3 of them, again suggesting lack of (a) transcriptional factor(s) necessary for CD18 expression.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 13-19 protein_molecule denotes ICAM-1
T2 24-29 protein_molecule denotes LFA-3
T3 33-37 protein_molecule denotes Tax1
T4 47-75 virus denotes T-cell leukemia virus type 1
T5 112-118 protein_molecule denotes ICAM-1
T6 122-127 protein_molecule denotes LFA-1
T7 131-163 cell_line denotes adult-T-cell-leukemia cell lines
T8 223-234 protein_molecule denotes HTLV-I TaxI
T9 259-265 protein_molecule denotes ICAM-I
T10 270-275 protein_molecule denotes LFA-3
T11 279-292 cell_type denotes human T cells
T12 310-316 virus denotes HTLV-I
T13 357-363 protein_molecule denotes ICAM-I
T14 368-373 protein_molecule denotes LFA-I
T15 377-399 cell_line denotes ATL-derived cell lines
T16 414-418 protein_molecule denotes TaxI
T17 424-448 cell_line denotes human T-cell line Jurkat
T18 462-466 protein_molecule denotes TaxI
T19 482-506 DNA_domain_or_region denotes metallothionein promoter
T20 527-531 RNA_family_or_group denotes mRNA
T21 558-564 protein_molecule denotes ICAM-I
T22 582-587 protein_molecule denotes LFA-3
T23 591-595 protein_molecule denotes TaxI
T24 702-708 protein_molecule denotes ICAM-I
T25 721-725 protein_molecule denotes TaxI
T26 768-790 DNA_domain_or_region denotes CAT reporter construct
T27 800-806 protein_molecule denotes ICAM-I
T28 822-829 DNA_molecule denotes plasmid
T29 841-845 protein_molecule denotes TaxI
T30 883-889 protein_molecule denotes ICAM-I
T31 893-898 protein_molecule denotes LFA-I
T32 902-918 cell_line denotes 4 ATL cell lines
T33 938-944 protein_molecule denotes ICAM-I
T34 967-971 cell_line denotes MT-I
T35 1012-1024 DNA_molecule denotes CAT reporter
T36 1034-1040 protein_molecule denotes ICAM-I
T37 1066-1070 cell_line denotes MT-I
T38 1103-1107 cell_line denotes MT-I
T39 1113-1126 other_organic_compound denotes 5-azacytidine
T40 1131-1140 protein_molecule denotes IFN-gamma
T41 1166-1172 protein_molecule denotes ICAM-I
T42 1192-1214 protein_family_or_group denotes transcriptional factor
T43 1246-1252 protein_molecule denotes ICAM-I
T44 1278-1282 cell_line denotes MT-I
T45 1291-1306 other_name denotes DNA methylation
T46 1320-1334 cell_line denotes ATL cell lines
T47 1336-1342 cell_line denotes TL-OmI
T48 1344-1348 cell_line denotes H582
T49 1350-1356 cell_line denotes HuT102
T50 1384-1388 RNA_family_or_group denotes mRNA
T51 1397-1413 protein_subunit denotes LFA-I beta chain
T52 1415-1419 protein_subunit denotes CD18
T53 1422-1426 cell_line denotes H582
T54 1431-1437 cell_line denotes HuT102
T55 1465-1470 protein_molecule denotes LFA-I
T56 1534-1551 DNA_domain_or_region denotes CAT reporter gene
T57 1561-1574 DNA_domain_or_region denotes CD18 promoter
T58 1635-1657 protein_family_or_group denotes transcriptional factor
T59 1675-1679 protein_molecule denotes CD18