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PubMed:7525701 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 14-18 protein denotes CD40
T2 22-29 cell_type denotes B cells
T3 48-70 protein denotes nuclear factor-kappa B
T4 76-115 protein denotes B cell-associated surface molecule CD40
T5 170-174 protein denotes CD40
T6 178-185 cell_type denotes B cells
T7 223-227 protein denotes IL-6
T8 265-274 protein denotes cytokines
T9 441-445 protein denotes CD40
T10 523-550 protein denotes nuclear factor (NF)-kappa B
T11 555-592 protein denotes NF-kappa B-like transcription factors
T12 627-631 protein denotes CD40
T13 643-666 cell_type denotes human tonsillar B cells
T14 674-686 cell_line denotes B cell lines
T15 845-848 protein denotes p50
T16 850-853 protein denotes p65
T17 855-859 protein denotes RelA
T18 862-867 protein denotes c-Rel
T19 971-975 protein denotes CD40
T20 985-995 protein denotes NF-kappa B
T21 1046-1056 protein denotes NF-kappa B
T22 1092-1096 protein denotes CD40
T23 1128-1132 protein denotes CD40
T24 1173-1196 DNA denotes B cell-associated genes
T25 1202-1228 DNA denotes NF-kappa B consensus sites

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 14-18 NP denotes CD40
C2 22-29 NP denotes B cells
C3 48-70 NP denotes nuclear factor-kappa B
C4 170-174 NP denotes CD40
C5 178-185 NP denotes B cells
C6 441-459 NP denotes CD40 cross-linking
C7 523-550 NP denotes nuclear factor (NF)-kappa B
C8 627-631 NP denotes CD40
C9 674-686 NP denotes B cell lines
C10 957-975 NP denotes cross-linking CD40
R1 C4 C1 coref-ident CD40,CD40
R2 C5 C2 coref-ident B cells,B cells
R3 C7 C3 coref-ident nuclear factor (NF)-kappa B,nuclear factor-kappa B
R4 C8 C4 coref-ident CD40,CD40
R5 C9 C5 coref-ident B cell lines,B cells
R6 C10 C6 coref-ident cross-linking CD40,CD40 cross-linking

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-71 Sentence denotes Cross-linking CD40 on B cells rapidly activates nuclear factor-kappa B.
S2 72-155 Sentence denotes The B cell-associated surface molecule CD40 functions to regulate B cell responses.
S3 156-300 Sentence denotes Cross-linking CD40 on B cells can lead to homotypic cell adhesion, IL-6 production, and, in combination with cytokines, to Ig isotype switching.
S4 301-381 Sentence denotes Tyrosine kinase activity is increased shortly after engagement of this receptor.
S5 382-487 Sentence denotes Little is known about how the very early events induced by CD40 cross-linking link to cellular responses.
S6 488-687 Sentence denotes In this study, we demonstrate that nuclear factor (NF)-kappa B and NF-kappa B-like transcription factors are activated after cross-linking CD40 on resting human tonsillar B cells and on B cell lines.
S7 688-772 Sentence denotes The activation is rapid and is mediated through a tyrosine kinase-dependent pathway.
S8 773-902 Sentence denotes The complexes detected in electrophoretic mobility shift assays contain p50, p65 (RelA), c-Rel, and most likely other components.
S9 903-1022 Sentence denotes By using transient transfection assays, we found that cross-linking CD40 supports NF-kappa B-dependent gene expression.
S10 1023-1229 Sentence denotes Our results define the NF-kappa B system as an intermediate event in CD40 signaling and suggest that the CD40 pathway can influence the expression of B cell-associated genes with NF-kappa B consensus sites.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 14-18 protein_molecule denotes CD40
T2 22-29 cell_type denotes B cells
T3 48-70 protein_molecule denotes nuclear factor-kappa B
T4 76-110 protein_molecule denotes B cell-associated surface molecule
T5 111-115 protein_molecule denotes CD40
T6 170-174 protein_molecule denotes CD40
T7 178-185 cell_type denotes B cells
T8 223-227 protein_molecule denotes IL-6
T9 265-274 protein_family_or_group denotes cytokines
T10 279-299 other_name denotes Ig isotype switching
T11 301-309 amino_acid_monomer denotes Tyrosine
T12 441-445 protein_molecule denotes CD40
T13 523-550 protein_family_or_group denotes nuclear factor (NF)-kappa B
T14 555-570 protein_family_or_group denotes NF-kappa B-like
T15 571-592 protein_family_or_group denotes transcription factors
T16 627-631 protein_molecule denotes CD40
T17 643-658 cell_type denotes human tonsillar
T18 659-666 cell_type denotes B cells
T19 674-686 cell_line denotes B cell lines
T20 738-771 other_name denotes tyrosine kinase-dependent pathway
T21 799-836 other_name denotes electrophoretic mobility shift assays
T22 845-848 protein_subunit denotes p50
T23 850-853 protein_subunit denotes p65
T24 855-859 protein_molecule denotes RelA
T25 862-867 protein_subunit denotes c-Rel
T26 912-941 other_name denotes transient transfection assays
T27 971-975 protein_molecule denotes CD40
T28 985-995 protein_molecule denotes NF-kappa B
T29 1046-1056 protein_molecule denotes NF-kappa B
T30 1092-1096 protein_molecule denotes CD40
T31 1128-1132 protein_molecule denotes CD40
T32 1173-1196 DNA_family_or_group denotes B cell-associated genes
T33 1202-1212 protein_molecule denotes NF-kappa B