PubMed:7525701
Annnotations
jnlpba-st-training
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 14-18 | protein | denotes | CD40 |
| T2 | 22-29 | cell_type | denotes | B cells |
| T3 | 48-70 | protein | denotes | nuclear factor-kappa B |
| T4 | 76-115 | protein | denotes | B cell-associated surface molecule CD40 |
| T5 | 170-174 | protein | denotes | CD40 |
| T6 | 178-185 | cell_type | denotes | B cells |
| T7 | 223-227 | protein | denotes | IL-6 |
| T8 | 265-274 | protein | denotes | cytokines |
| T9 | 441-445 | protein | denotes | CD40 |
| T10 | 523-550 | protein | denotes | nuclear factor (NF)-kappa B |
| T11 | 555-592 | protein | denotes | NF-kappa B-like transcription factors |
| T12 | 627-631 | protein | denotes | CD40 |
| T13 | 643-666 | cell_type | denotes | human tonsillar B cells |
| T14 | 674-686 | cell_line | denotes | B cell lines |
| T15 | 845-848 | protein | denotes | p50 |
| T16 | 850-853 | protein | denotes | p65 |
| T17 | 855-859 | protein | denotes | RelA |
| T18 | 862-867 | protein | denotes | c-Rel |
| T19 | 971-975 | protein | denotes | CD40 |
| T20 | 985-995 | protein | denotes | NF-kappa B |
| T21 | 1046-1056 | protein | denotes | NF-kappa B |
| T22 | 1092-1096 | protein | denotes | CD40 |
| T23 | 1128-1132 | protein | denotes | CD40 |
| T24 | 1173-1196 | DNA | denotes | B cell-associated genes |
| T25 | 1202-1228 | DNA | denotes | NF-kappa B consensus sites |
genia-medco-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| C1 | 14-18 | NP | denotes | CD40 |
| C2 | 22-29 | NP | denotes | B cells |
| C3 | 48-70 | NP | denotes | nuclear factor-kappa B |
| C4 | 170-174 | NP | denotes | CD40 |
| C5 | 178-185 | NP | denotes | B cells |
| C6 | 441-459 | NP | denotes | CD40 cross-linking |
| C7 | 523-550 | NP | denotes | nuclear factor (NF)-kappa B |
| C8 | 627-631 | NP | denotes | CD40 |
| C9 | 674-686 | NP | denotes | B cell lines |
| C10 | 957-975 | NP | denotes | cross-linking CD40 |
| R1 | C4 | C1 | coref-ident | CD40,CD40 |
| R2 | C5 | C2 | coref-ident | B cells,B cells |
| R3 | C7 | C3 | coref-ident | nuclear factor (NF)-kappa B,nuclear factor-kappa B |
| R4 | C8 | C4 | coref-ident | CD40,CD40 |
| R5 | C9 | C5 | coref-ident | B cell lines,B cells |
| R6 | C10 | C6 | coref-ident | cross-linking CD40,CD40 cross-linking |
pubmed-sentences-benchmark
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| S1 | 0-71 | Sentence | denotes | Cross-linking CD40 on B cells rapidly activates nuclear factor-kappa B. |
| S2 | 72-155 | Sentence | denotes | The B cell-associated surface molecule CD40 functions to regulate B cell responses. |
| S3 | 156-300 | Sentence | denotes | Cross-linking CD40 on B cells can lead to homotypic cell adhesion, IL-6 production, and, in combination with cytokines, to Ig isotype switching. |
| S4 | 301-381 | Sentence | denotes | Tyrosine kinase activity is increased shortly after engagement of this receptor. |
| S5 | 382-487 | Sentence | denotes | Little is known about how the very early events induced by CD40 cross-linking link to cellular responses. |
| S6 | 488-687 | Sentence | denotes | In this study, we demonstrate that nuclear factor (NF)-kappa B and NF-kappa B-like transcription factors are activated after cross-linking CD40 on resting human tonsillar B cells and on B cell lines. |
| S7 | 688-772 | Sentence | denotes | The activation is rapid and is mediated through a tyrosine kinase-dependent pathway. |
| S8 | 773-902 | Sentence | denotes | The complexes detected in electrophoretic mobility shift assays contain p50, p65 (RelA), c-Rel, and most likely other components. |
| S9 | 903-1022 | Sentence | denotes | By using transient transfection assays, we found that cross-linking CD40 supports NF-kappa B-dependent gene expression. |
| S10 | 1023-1229 | Sentence | denotes | Our results define the NF-kappa B system as an intermediate event in CD40 signaling and suggest that the CD40 pathway can influence the expression of B cell-associated genes with NF-kappa B consensus sites. |
GENIAcorpus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 14-18 | protein_molecule | denotes | CD40 |
| T2 | 22-29 | cell_type | denotes | B cells |
| T3 | 48-70 | protein_molecule | denotes | nuclear factor-kappa B |
| T4 | 76-110 | protein_molecule | denotes | B cell-associated surface molecule |
| T5 | 111-115 | protein_molecule | denotes | CD40 |
| T6 | 170-174 | protein_molecule | denotes | CD40 |
| T7 | 178-185 | cell_type | denotes | B cells |
| T8 | 223-227 | protein_molecule | denotes | IL-6 |
| T9 | 265-274 | protein_family_or_group | denotes | cytokines |
| T10 | 279-299 | other_name | denotes | Ig isotype switching |
| T11 | 301-309 | amino_acid_monomer | denotes | Tyrosine |
| T12 | 441-445 | protein_molecule | denotes | CD40 |
| T13 | 523-550 | protein_family_or_group | denotes | nuclear factor (NF)-kappa B |
| T14 | 555-570 | protein_family_or_group | denotes | NF-kappa B-like |
| T15 | 571-592 | protein_family_or_group | denotes | transcription factors |
| T16 | 627-631 | protein_molecule | denotes | CD40 |
| T17 | 643-658 | cell_type | denotes | human tonsillar |
| T18 | 659-666 | cell_type | denotes | B cells |
| T19 | 674-686 | cell_line | denotes | B cell lines |
| T20 | 738-771 | other_name | denotes | tyrosine kinase-dependent pathway |
| T21 | 799-836 | other_name | denotes | electrophoretic mobility shift assays |
| T22 | 845-848 | protein_subunit | denotes | p50 |
| T23 | 850-853 | protein_subunit | denotes | p65 |
| T24 | 855-859 | protein_molecule | denotes | RelA |
| T25 | 862-867 | protein_subunit | denotes | c-Rel |
| T26 | 912-941 | other_name | denotes | transient transfection assays |
| T27 | 971-975 | protein_molecule | denotes | CD40 |
| T28 | 985-995 | protein_molecule | denotes | NF-kappa B |
| T29 | 1046-1056 | protein_molecule | denotes | NF-kappa B |
| T30 | 1092-1096 | protein_molecule | denotes | CD40 |
| T31 | 1128-1132 | protein_molecule | denotes | CD40 |
| T32 | 1173-1196 | DNA_family_or_group | denotes | B cell-associated genes |
| T33 | 1202-1212 | protein_molecule | denotes | NF-kappa B |