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Test-Species-PubTator

Id Subject Object Predicate Lexical cue resolved_to
3 16-21 Species denotes human 9606
4 40-45 Gene denotes mucin 100508689
5 74-90 Chemical denotes oligosaccharides MESH:D009844
49 150-155 Species denotes Human 9606
50 165-170 Gene denotes mucin 100508689
51 250-273 Chemical denotes guanidine hydrochloride MESH:D019791
52 284-298 Chemical denotes dithiothreitol MESH:D004229
53 327-340 Chemical denotes iodoacetamide MESH:D007460
54 342-347 Gene denotes Mucin 100508689
55 387-397 Chemical denotes Bio-Gel A- -
56 433-455 Chemical denotes sodium dodecyl sulfate MESH:D012967
57 470-475 Gene denotes mucin 100508689
58 529-539 Chemical denotes acrylamide MESH:D020106
59 546-553 Chemical denotes agarose MESH:D012685
60 663-666 Chemical denotes Ser MESH:D012694
61 671-674 Chemical denotes Thr MESH:D013912
62 676-686 Chemical denotes Saccharide MESH:D002241
63 732-735 Chemical denotes Fuc -
64 736-746 Chemical denotes Gal:GlcNAc -
65 747-753 Chemical denotes GalNAc -
66 754-759 Chemical denotes NeuAc -
67 775-792 Chemical denotes Inorganic sulfate MESH:D013431
68 826-833 Chemical denotes mannose MESH:D008358
69 876-881 Gene denotes mucin 100508689
70 905-921 Chemical denotes oligosaccharides MESH:D009844
71 960-966 Chemical denotes GalNAc -
72 993-1017 Chemical denotes N-acetylgalactosaminitol MESH:C011631
73 1019-1027 Chemical denotes GalNAcol -
74 1072-1078 Chemical denotes GalNAc -
75 1099-1115 Chemical denotes oligosaccharides MESH:D009844
76 1164-1178 Chemical denotes DEAE-cellulose MESH:D003636
77 1240-1257 Chemical denotes Bio-Gel P-2 resin -
78 1281-1297 Chemical denotes oligosaccharides MESH:D009844
79 1393-1409 Chemical denotes oligosaccharides MESH:D009844
80 1441-1453 Chemical denotes disaccharide MESH:D004187
81 1459-1473 Chemical denotes nonasaccharide -
82 1493-1508 Chemical denotes oligosaccharide MESH:D009844
83 1536-1544 Chemical denotes GalNAcol -
84 1552-1567 Chemical denotes tetrasaccharide -
85 1569-1579 Chemical denotes Gal:GlcNAc -
86 1580-1588 Chemical denotes GalNAcol -
87 1619-1634 Chemical denotes oligosaccharide MESH:D009844
88 1662-1670 Chemical denotes GalNAcol -
89 1678-1691 Chemical denotes trisaccharide MESH:D014312
90 1693-1705 Chemical denotes Gal:GalNAcol -
91 1706-1711 Chemical denotes NeuAc -

Test-Species-PubDictionaries

Id Subject Object Predicate Lexical cue db_id
T1 16-21 OrganismTaxon denotes human 9606
T2 150-155 OrganismTaxon denotes Human 9606

Test-Species-PubDictionaries-PubMedBERT

Id Subject Object Predicate Lexical cue db_id
T1 16-21 Species denotes human 9606
T2 150-155 Species denotes Human 9606
T3 676-686 Species denotes Saccharide 984343
T4 1164-1168 Species denotes DEAE 2868694
T5 1479-1484 Species denotes major 1925465
T6 1606-1611 Species denotes major 1925465

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 826-833 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ

sentences

Id Subject Object Predicate Lexical cue
T1 0-149 Sentence denotes Purification of human midcycle cervical mucin and characterization of its oligosaccharides with respect to size, composition, and microheterogeneity.
T2 150-341 Sentence denotes Human cervical mucin was solubilized from the gel phase of pooled midcycle cervical mucus using 6 M guanidine hydrochloride and 10 mM dithiothreitol and was then alkylated with iodoacetamide.
T3 342-456 Sentence denotes Mucin was then purified by gel filtration on Bio-Gel A-50m resin in buffer containing 0.1% sodium dodecyl sulfate.
T4 457-559 Sentence denotes The purified mucin gave a single band upon electrophoresis in either 5% acrylamide or 1% agarose gels.
T5 560-675 Sentence denotes Protein comprised 21% of the glycoprotein by weight and amino acid analysis revealed a high content of Ser and Thr.
T6 676-774 Sentence denotes Saccharide analysis yielded approximate molar ratios of Fuc:Gal:GlcNAc:GalNAc:NeuAc = 1:2:1:1:0.5.
T7 775-845 Sentence denotes Inorganic sulfate, 1% by weight, was detected, but mannose was absent.
T8 846-1090 Sentence denotes Reductive alkali treatment of mucin resulted in release of oligosaccharides with concomitant conversion of 77% of GalNAc to its reduced derivative N-acetylgalactosaminitol (GalNAcol) thus demonstrating O-glycosidic linkage of GalNAc to protein.
T9 1091-1258 Sentence denotes Reduced oligosaccharides were purified by ion exchange chromatography on DEAE-cellulose, paper chromatography, and high resolution gel filtration on Bio-Gel P-2 resin.
T10 1259-1343 Sentence denotes A total of 16 reduced oligosaccharides were identified by thin layer chromatography.
T11 1344-1474 Sentence denotes These included neutral, sialylated, and sulfated oligosaccharides and they varied in size from a disaccharide to a nonasaccharide.
T12 1475-1720 Sentence denotes The major neutral oligosaccharide isolated (21% of recovered GalNAcol) was a tetrasaccharide, Gal:GlcNAc:GalNAcol = 2:1:1, and the major acidic oligosaccharide isolated (11% of recovered GalNAcol) was a trisaccharide, Gal:GalNAcol:NeuAc = 1:1:1.
T1 0-149 Sentence denotes Purification of human midcycle cervical mucin and characterization of its oligosaccharides with respect to size, composition, and microheterogeneity.
T2 150-341 Sentence denotes Human cervical mucin was solubilized from the gel phase of pooled midcycle cervical mucus using 6 M guanidine hydrochloride and 10 mM dithiothreitol and was then alkylated with iodoacetamide.
T3 342-456 Sentence denotes Mucin was then purified by gel filtration on Bio-Gel A-50m resin in buffer containing 0.1% sodium dodecyl sulfate.
T4 457-559 Sentence denotes The purified mucin gave a single band upon electrophoresis in either 5% acrylamide or 1% agarose gels.
T5 560-675 Sentence denotes Protein comprised 21% of the glycoprotein by weight and amino acid analysis revealed a high content of Ser and Thr.
T6 676-774 Sentence denotes Saccharide analysis yielded approximate molar ratios of Fuc:Gal:GlcNAc:GalNAc:NeuAc = 1:2:1:1:0.5.
T7 775-845 Sentence denotes Inorganic sulfate, 1% by weight, was detected, but mannose was absent.
T8 846-1090 Sentence denotes Reductive alkali treatment of mucin resulted in release of oligosaccharides with concomitant conversion of 77% of GalNAc to its reduced derivative N-acetylgalactosaminitol (GalNAcol) thus demonstrating O-glycosidic linkage of GalNAc to protein.
T9 1091-1258 Sentence denotes Reduced oligosaccharides were purified by ion exchange chromatography on DEAE-cellulose, paper chromatography, and high resolution gel filtration on Bio-Gel P-2 resin.
T10 1259-1343 Sentence denotes A total of 16 reduced oligosaccharides were identified by thin layer chromatography.
T11 1344-1474 Sentence denotes These included neutral, sialylated, and sulfated oligosaccharides and they varied in size from a disaccharide to a nonasaccharide.
T12 1475-1720 Sentence denotes The major neutral oligosaccharide isolated (21% of recovered GalNAcol) was a tetrasaccharide, Gal:GlcNAc:GalNAcol = 2:1:1, and the major acidic oligosaccharide isolated (11% of recovered GalNAcol) was a trisaccharide, Gal:GalNAcol:NeuAc = 1:1:1.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 826-833 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 960-966 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL
T2 1072-1078 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 960-966 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL
T2 1072-1078 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL
T3 747-753 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL
T4 754-759 Glycan denotes NeuAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G76685HR
T7 1706-1711 Glycan denotes NeuAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G76685HR

GlyCosmos15-CL

Id Subject Object Predicate Lexical cue cl_id
T1 490-494 Cell denotes band http://purl.obolibrary.org/obo/CL:0000560

GlyCosmos15-Taxon

Id Subject Object Predicate Lexical cue db_id
T1 16-21 Organism denotes human 9606
T2 150-155 Organism denotes Human 9606

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-149 Sentence denotes Purification of human midcycle cervical mucin and characterization of its oligosaccharides with respect to size, composition, and microheterogeneity.
T2 150-341 Sentence denotes Human cervical mucin was solubilized from the gel phase of pooled midcycle cervical mucus using 6 M guanidine hydrochloride and 10 mM dithiothreitol and was then alkylated with iodoacetamide.
T3 342-456 Sentence denotes Mucin was then purified by gel filtration on Bio-Gel A-50m resin in buffer containing 0.1% sodium dodecyl sulfate.
T4 457-559 Sentence denotes The purified mucin gave a single band upon electrophoresis in either 5% acrylamide or 1% agarose gels.
T5 560-774 Sentence denotes Protein comprised 21% of the glycoprotein by weight and amino acid analysis revealed a high content of Ser and Thr. Saccharide analysis yielded approximate molar ratios of Fuc:Gal:GlcNAc:GalNAc:NeuAc = 1:2:1:1:0.5.
T6 775-845 Sentence denotes Inorganic sulfate, 1% by weight, was detected, but mannose was absent.
T7 846-1090 Sentence denotes Reductive alkali treatment of mucin resulted in release of oligosaccharides with concomitant conversion of 77% of GalNAc to its reduced derivative N-acetylgalactosaminitol (GalNAcol) thus demonstrating O-glycosidic linkage of GalNAc to protein.
T8 1091-1258 Sentence denotes Reduced oligosaccharides were purified by ion exchange chromatography on DEAE-cellulose, paper chromatography, and high resolution gel filtration on Bio-Gel P-2 resin.
T9 1259-1343 Sentence denotes A total of 16 reduced oligosaccharides were identified by thin layer chromatography.
T10 1344-1474 Sentence denotes These included neutral, sialylated, and sulfated oligosaccharides and they varied in size from a disaccharide to a nonasaccharide.
T11 1475-1720 Sentence denotes The major neutral oligosaccharide isolated (21% of recovered GalNAcol) was a tetrasaccharide, Gal:GlcNAc:GalNAcol = 2:1:1, and the major acidic oligosaccharide isolated (11% of recovered GalNAcol) was a trisaccharide, Gal:GalNAcol:NeuAc = 1:1:1.

Lectin-Jamboree-Sentence

Id Subject Object Predicate Lexical cue
T1 0-149 Sentence denotes Purification of human midcycle cervical mucin and characterization of its oligosaccharides with respect to size, composition, and microheterogeneity.
T2 150-341 Sentence denotes Human cervical mucin was solubilized from the gel phase of pooled midcycle cervical mucus using 6 M guanidine hydrochloride and 10 mM dithiothreitol and was then alkylated with iodoacetamide.
T3 342-456 Sentence denotes Mucin was then purified by gel filtration on Bio-Gel A-50m resin in buffer containing 0.1% sodium dodecyl sulfate.
T4 457-559 Sentence denotes The purified mucin gave a single band upon electrophoresis in either 5% acrylamide or 1% agarose gels.
T5 560-774 Sentence denotes Protein comprised 21% of the glycoprotein by weight and amino acid analysis revealed a high content of Ser and Thr. Saccharide analysis yielded approximate molar ratios of Fuc:Gal:GlcNAc:GalNAc:NeuAc = 1:2:1:1:0.5.
T6 775-845 Sentence denotes Inorganic sulfate, 1% by weight, was detected, but mannose was absent.
T7 846-1090 Sentence denotes Reductive alkali treatment of mucin resulted in release of oligosaccharides with concomitant conversion of 77% of GalNAc to its reduced derivative N-acetylgalactosaminitol (GalNAcol) thus demonstrating O-glycosidic linkage of GalNAc to protein.
T8 1091-1258 Sentence denotes Reduced oligosaccharides were purified by ion exchange chromatography on DEAE-cellulose, paper chromatography, and high resolution gel filtration on Bio-Gel P-2 resin.
T9 1259-1343 Sentence denotes A total of 16 reduced oligosaccharides were identified by thin layer chromatography.
T10 1344-1474 Sentence denotes These included neutral, sialylated, and sulfated oligosaccharides and they varied in size from a disaccharide to a nonasaccharide.
T11 1475-1720 Sentence denotes The major neutral oligosaccharide isolated (21% of recovered GalNAcol) was a tetrasaccharide, Gal:GlcNAc:GalNAcol = 2:1:1, and the major acidic oligosaccharide isolated (11% of recovered GalNAcol) was a trisaccharide, Gal:GalNAcol:NeuAc = 1:1:1.

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 225-239 Body_part denotes cervical mucus http://purl.obolibrary.org/obo/UBERON_0000316
T2 716-721 Body_part denotes molar http://purl.obolibrary.org/obo/UBERON_0003655

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 225-239 Body_part denotes cervical mucus FMA:83689

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 16-21 OrganismTaxon denotes human 9606
T2 150-155 OrganismTaxon denotes Human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 225-239 Body_part denotes cervical mucus http://purl.obolibrary.org/obo/UBERON_0000316
T2 716-721 Body_part denotes molar http://purl.obolibrary.org/obo/UBERON_0003655
T3 1322-1327 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 490-494 Cell denotes band http://purl.obolibrary.org/obo/CL:0000560