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spacy-test

Id Subject Object Predicate Lexical cue
spaCy_T0 0-7 VBG denotes Cloning
spaCy_T1 8-10 IN denotes of
spaCy_T2 11-12 DT denotes a
spaCy_T3 13-17 NNP denotes cDNA
spaCy_T4 18-26 VBG denotes encoding
spaCy_T5 27-30 DT denotes the
spaCy_T6 31-39 JJS denotes smallest
spaCy_T7 40-53 NN denotes neurofilament
spaCy_T8 54-61 NN denotes protein
spaCy_T9 62-66 IN denotes from
spaCy_T10 67-70 DT denotes the
spaCy_T11 71-74 NN denotes rat
spaCy_T12 74-75 . denotes .
spaCy_T13 76-78 PRP denotes We
spaCy_T14 79-83 VBP denotes have
spaCy_T98 576-577 NNP denotes A
spaCy_T99 577-578 -RRB- denotes )
spaCy_T15 84-90 VBN denotes cloned
spaCy_T16 91-92 DT denotes a
spaCy_T17 93-97 NNP denotes cDNA
spaCy_T18 98-104 NN denotes coding
spaCy_T19 105-108 IN denotes for
spaCy_T20 109-112 DT denotes the
spaCy_T21 113-121 JJS denotes smallest
spaCy_T22 122-125 NN denotes rat
spaCy_T23 126-139 NN denotes neurofilament
spaCy_T24 140-147 NN denotes protein
spaCy_T25 147-148 . denotes .
spaCy_T26 149-152 DT denotes The
spaCy_T27 153-157 NNP denotes cDNA
spaCy_T28 158-160 VBZ denotes is
spaCy_T29 161-164 CD denotes 861
spaCy_T30 165-176 NNS denotes nucleotides
spaCy_T31 177-181 RB denotes long
spaCy_T32 182-188 VBG denotes coding
spaCy_T33 189-192 IN denotes for
spaCy_T34 193-196 CD denotes 287
spaCy_T35 197-202 JJ denotes amino
spaCy_T36 203-208 NNS denotes acids
spaCy_T37 209-213 IN denotes from
spaCy_T38 214-217 DT denotes the
spaCy_T39 218-226 JJ denotes internal
spaCy_T40 227-240 JJ denotes alpha-helical
spaCy_T41 241-247 NN denotes region
spaCy_T42 248-251 CC denotes and
spaCy_T43 252-255 DT denotes the
spaCy_T44 256-272 JJ denotes carboxy-terminal
spaCy_T45 273-277 NN denotes tail
spaCy_T46 278-284 NN denotes domain
spaCy_T47 285-287 IN denotes of
spaCy_T48 288-291 DT denotes the
spaCy_T49 292-305 NN denotes neurofilament
spaCy_T50 306-313 NN denotes protein
spaCy_T51 313-314 . denotes .
spaCy_T52 315-325 NN denotes Comparison
spaCy_T53 326-328 IN denotes of
spaCy_T54 329-332 DT denotes the
spaCy_T55 333-340 NN denotes porcine
spaCy_T56 340-341 , denotes ,
spaCy_T57 342-347 NN denotes mouse
spaCy_T58 348-351 CC denotes and
spaCy_T59 352-355 NN denotes rat
spaCy_T60 356-369 NN denotes neurofilament
spaCy_T61 370-377 NN denotes protein
spaCy_T62 378-387 NNS denotes sequences
spaCy_T63 388-393 VBZ denotes shows
spaCy_T64 394-398 IN denotes that
spaCy_T65 399-402 DT denotes the
spaCy_T66 403-410 NN denotes protein
spaCy_T67 411-413 VBZ denotes is
spaCy_T68 414-420 RB denotes highly
spaCy_T69 421-430 VBN denotes conserved
spaCy_T70 431-432 -LRB- denotes (
spaCy_T71 432-439 JJR denotes greater
spaCy_T72 440-444 IN denotes than
spaCy_T73 445-447 CD denotes 93
spaCy_T74 447-448 NN denotes %
spaCy_T75 449-457 NN denotes identity
spaCy_T76 457-458 -RRB- denotes )
spaCy_T77 458-459 . denotes .
spaCy_T78 460-464 NNP denotes Blot
spaCy_T79 465-473 NN denotes analysis
spaCy_T80 474-483 VBZ denotes indicates
spaCy_T81 484-488 IN denotes that
spaCy_T82 489-492 DT denotes the
spaCy_T83 493-497 NNP denotes cDNA
spaCy_T84 498-500 VBZ denotes is
spaCy_T85 501-508 VBN denotes derived
spaCy_T86 509-513 IN denotes from
spaCy_T87 514-515 DT denotes a
spaCy_T88 516-522 JJ denotes single
spaCy_T89 523-536 NN denotes neurofilament
spaCy_T90 537-541 NN denotes gene
spaCy_T91 542-546 WDT denotes that
spaCy_T92 547-552 NNS denotes codes
spaCy_T93 553-556 IN denotes for
spaCy_T94 557-560 CD denotes two
spaCy_T95 561-570 JJ denotes different
spaCy_T96 571-575 NN denotes poly
spaCy_T97 575-576 -LRB- denotes (
spaCy_T100 578-579 VBP denotes +
spaCy_T101 580-584 NNP denotes mRNA
spaCy_T102 585-592 NNS denotes species
spaCy_T103 592-593 . denotes .
spaCy_R64 spaCy_T64 spaCy_T69 mark that,conserved
spaCy_R65 spaCy_T65 spaCy_T66 det the,protein
spaCy_R0 spaCy_T0 spaCy_T0 ROOT Cloning,Cloning
spaCy_R1 spaCy_T1 spaCy_T0 prep of,Cloning
spaCy_R2 spaCy_T2 spaCy_T3 det a,cDNA
spaCy_R3 spaCy_T3 spaCy_T1 pobj cDNA,of
spaCy_R4 spaCy_T4 spaCy_T0 conj encoding,Cloning
spaCy_R5 spaCy_T5 spaCy_T8 det the,protein
spaCy_R6 spaCy_T6 spaCy_T8 amod smallest,protein
spaCy_R7 spaCy_T7 spaCy_T8 compound neurofilament,protein
spaCy_R8 spaCy_T8 spaCy_T4 dobj protein,encoding
spaCy_R9 spaCy_T9 spaCy_T8 prep from,protein
spaCy_R10 spaCy_T10 spaCy_T11 det the,rat
spaCy_R11 spaCy_T11 spaCy_T9 pobj rat,from
spaCy_R12 spaCy_T12 spaCy_T0 punct .,Cloning
spaCy_R13 spaCy_T13 spaCy_T15 nsubj We,cloned
spaCy_R14 spaCy_T14 spaCy_T15 aux have,cloned
spaCy_R15 spaCy_T15 spaCy_T15 ROOT cloned,cloned
spaCy_R16 spaCy_T16 spaCy_T18 det a,coding
spaCy_R17 spaCy_T17 spaCy_T18 compound cDNA,coding
spaCy_R18 spaCy_T18 spaCy_T15 dobj coding,cloned
spaCy_R19 spaCy_T19 spaCy_T18 prep for,coding
spaCy_R20 spaCy_T20 spaCy_T24 det the,protein
spaCy_R21 spaCy_T21 spaCy_T24 amod smallest,protein
spaCy_R22 spaCy_T22 spaCy_T24 nmod rat,protein
spaCy_R23 spaCy_T23 spaCy_T24 compound neurofilament,protein
spaCy_R24 spaCy_T24 spaCy_T19 pobj protein,for
spaCy_R25 spaCy_T25 spaCy_T15 punct .,cloned
spaCy_R26 spaCy_T26 spaCy_T27 det The,cDNA
spaCy_R27 spaCy_T27 spaCy_T28 nsubj cDNA,is
spaCy_R28 spaCy_T28 spaCy_T28 ROOT is,is
spaCy_R29 spaCy_T29 spaCy_T30 nummod 861,nucleotides
spaCy_R30 spaCy_T30 spaCy_T31 npadvmod nucleotides,long
spaCy_R31 spaCy_T31 spaCy_T32 amod long,coding
spaCy_R32 spaCy_T32 spaCy_T28 attr coding,is
spaCy_R33 spaCy_T33 spaCy_T32 prep for,coding
spaCy_R34 spaCy_T34 spaCy_T36 nummod 287,acids
spaCy_R35 spaCy_T35 spaCy_T36 amod amino,acids
spaCy_R36 spaCy_T36 spaCy_T33 pobj acids,for
spaCy_R37 spaCy_T37 spaCy_T36 prep from,acids
spaCy_R38 spaCy_T38 spaCy_T41 det the,region
spaCy_R39 spaCy_T39 spaCy_T41 amod internal,region
spaCy_R40 spaCy_T40 spaCy_T41 amod alpha-helical,region
spaCy_R41 spaCy_T41 spaCy_T37 pobj region,from
spaCy_R42 spaCy_T42 spaCy_T41 cc and,region
spaCy_R43 spaCy_T43 spaCy_T46 det the,domain
spaCy_R44 spaCy_T44 spaCy_T46 amod carboxy-terminal,domain
spaCy_R45 spaCy_T45 spaCy_T46 compound tail,domain
spaCy_R46 spaCy_T46 spaCy_T41 conj domain,region
spaCy_R47 spaCy_T47 spaCy_T46 prep of,domain
spaCy_R48 spaCy_T48 spaCy_T50 det the,protein
spaCy_R49 spaCy_T49 spaCy_T50 compound neurofilament,protein
spaCy_R50 spaCy_T50 spaCy_T47 pobj protein,of
spaCy_R51 spaCy_T51 spaCy_T28 punct .,is
spaCy_R52 spaCy_T52 spaCy_T63 nsubj Comparison,shows
spaCy_R53 spaCy_T53 spaCy_T52 prep of,Comparison
spaCy_R54 spaCy_T54 spaCy_T57 det the,mouse
spaCy_R55 spaCy_T55 spaCy_T57 amod porcine,mouse
spaCy_R56 spaCy_T56 spaCy_T55 punct ",",porcine
spaCy_R57 spaCy_T57 spaCy_T53 pobj mouse,of
spaCy_R58 spaCy_T58 spaCy_T57 cc and,mouse
spaCy_R59 spaCy_T59 spaCy_T62 compound rat,sequences
spaCy_R60 spaCy_T60 spaCy_T62 compound neurofilament,sequences
spaCy_R61 spaCy_T61 spaCy_T62 compound protein,sequences
spaCy_R62 spaCy_T62 spaCy_T57 conj sequences,mouse
spaCy_R63 spaCy_T63 spaCy_T63 ROOT shows,shows
spaCy_R66 spaCy_T66 spaCy_T69 nsubjpass protein,conserved
spaCy_R67 spaCy_T67 spaCy_T69 auxpass is,conserved
spaCy_R68 spaCy_T68 spaCy_T69 advmod highly,conserved
spaCy_R69 spaCy_T69 spaCy_T63 ccomp conserved,shows
spaCy_R70 spaCy_T70 spaCy_T75 punct (,identity
spaCy_R71 spaCy_T71 spaCy_T73 amod greater,93
spaCy_R72 spaCy_T72 spaCy_T73 quantmod than,93
spaCy_R73 spaCy_T73 spaCy_T74 nummod 93,%
spaCy_R74 spaCy_T74 spaCy_T75 compound %,identity
spaCy_R75 spaCy_T75 spaCy_T69 npadvmod identity,conserved
spaCy_R76 spaCy_T76 spaCy_T69 punct ),conserved
spaCy_R77 spaCy_T77 spaCy_T63 punct .,shows
spaCy_R78 spaCy_T78 spaCy_T79 compound Blot,analysis
spaCy_R79 spaCy_T79 spaCy_T80 nsubj analysis,indicates
spaCy_R80 spaCy_T80 spaCy_T80 ROOT indicates,indicates
spaCy_R81 spaCy_T81 spaCy_T85 mark that,derived
spaCy_R82 spaCy_T82 spaCy_T83 det the,cDNA
spaCy_R83 spaCy_T83 spaCy_T85 nsubjpass cDNA,derived
spaCy_R84 spaCy_T84 spaCy_T85 auxpass is,derived
spaCy_R85 spaCy_T85 spaCy_T80 ccomp derived,indicates
spaCy_R86 spaCy_T86 spaCy_T85 prep from,derived
spaCy_R87 spaCy_T87 spaCy_T90 det a,gene
spaCy_R88 spaCy_T88 spaCy_T90 amod single,gene
spaCy_R89 spaCy_T89 spaCy_T90 compound neurofilament,gene
spaCy_R90 spaCy_T90 spaCy_T86 pobj gene,from
spaCy_R91 spaCy_T91 spaCy_T92 nsubj that,codes
spaCy_R92 spaCy_T92 spaCy_T90 relcl codes,gene
spaCy_R93 spaCy_T93 spaCy_T92 prep for,codes
spaCy_R94 spaCy_T94 spaCy_T96 nummod two,poly
spaCy_R95 spaCy_T95 spaCy_T96 amod different,poly
spaCy_R96 spaCy_T96 spaCy_T93 pobj poly,for
spaCy_R97 spaCy_T97 spaCy_T96 punct (,poly
spaCy_R98 spaCy_T98 spaCy_T96 appos A,poly
spaCy_R99 spaCy_T99 spaCy_T96 punct ),poly
spaCy_R100 spaCy_T100 spaCy_T101 compound +,mRNA
spaCy_R101 spaCy_T101 spaCy_T102 compound mRNA,species
spaCy_R102 spaCy_T102 spaCy_T86 pobj species,from
spaCy_R103 spaCy_T103 spaCy_T80 punct .,indicates

oger-json-test

Id Subject Object Predicate Lexical cue
T1 13-17 SO:0000756 denotes cDNA
T2 13-17 D018076 denotes cDNA
T3 40-53 GO:0005883 denotes neurofilament
T4 54-61 CHEBI:36080 denotes protein
T5 54-61 PR:000000001 denotes protein
T6 54-61 GO:0003675 denotes protein
T7 54-61 SO:0000104 denotes protein
T8 71-74 D051381 denotes rat
T9 71-74 PR:Q8VHJ4 denotes rat
T10 71-74 PR:Q2G0B1 denotes rat
T11 71-74 10116 denotes rat
T12 84-90 SO:0000788 denotes cloned
T13 93-97 SO:0000756 denotes cDNA
T14 93-97 D018076 denotes cDNA
T15 122-125 D051381 denotes rat
T16 122-125 PR:Q8VHJ4 denotes rat
T17 122-125 PR:Q2G0B1 denotes rat
T18 122-125 10116 denotes rat
T19 126-139 GO:0005883 denotes neurofilament
T20 140-147 CHEBI:36080 denotes protein
T21 140-147 PR:000000001 denotes protein
T22 140-147 GO:0003675 denotes protein
T23 140-147 SO:0000104 denotes protein
T24 153-157 SO:0000756 denotes cDNA
T25 153-157 D018076 denotes cDNA
T26 165-176 D009711 denotes nucleotides
T27 165-176 CHEBI:36976 denotes nucleotides
T28 197-202 CHEBI:46882 denotes amino
T29 197-208 CHEBI:33709 denotes amino acids
T30 197-208 CHEBI:33704 denotes amino acids
T31 197-208 D000596 denotes amino acids
T32 203-208 CHEBI:37527 denotes acids
T33 227-232 CHEBI:30216 denotes alpha
T34 241-247 SO:0000001 denotes region
T35 241-247 SO:0000839 denotes region
T36 256-263 CHEBI:46883 denotes carboxy
T37 278-284 SO:0000417 denotes domain
T38 292-305 GO:0005883 denotes neurofilament
T39 306-313 CHEBI:36080 denotes protein
T40 306-313 PR:000000001 denotes protein
T41 306-313 GO:0003675 denotes protein
T42 306-313 SO:0000104 denotes protein
T43 342-347 D051379 denotes mouse
T44 342-347 10090 denotes mouse
T45 352-355 D051381 denotes rat
T46 352-355 PR:Q8VHJ4 denotes rat
T47 352-355 PR:Q2G0B1 denotes rat
T48 352-355 10116 denotes rat
T49 356-369 GO:0005883 denotes neurofilament
T50 370-377 CHEBI:36080 denotes protein
T51 370-377 PR:000000001 denotes protein
T52 370-377 GO:0003675 denotes protein
T53 370-377 SO:0000104 denotes protein
T54 403-410 CHEBI:36080 denotes protein
T55 403-410 PR:000000001 denotes protein
T56 403-410 GO:0003675 denotes protein
T57 403-410 SO:0000104 denotes protein
T58 421-430 SO:0000856 denotes conserved
T59 460-464 PR:Q9CQS6 denotes Blot
T60 460-464 PR:Q29TV8 denotes Blot
T61 493-497 SO:0000756 denotes cDNA
T62 493-497 D018076 denotes cDNA
T63 516-522 SO:0000984 denotes single
T64 523-536 GO:0005883 denotes neurofilament
T65 537-541 SO:0000704 denotes gene
T66 571-575 CL:0000775 denotes poly
T67 571-575 CL:0000096 denotes poly
T68 571-577 CHEBI:8756 denotes poly(A
T69 571-577 D011061 denotes poly(A
T70 571-584 D012333 denotes poly(A)+ mRNA
T71 580-584 D012333 denotes mRNA
T72 580-584 SO:0000234 denotes mRNA
T73 580-584 CHEBI:33699 denotes mRNA

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 71-74 OrganismTaxon denotes rat 10114|10116
T3 122-125 OrganismTaxon denotes rat 10114|10116
T5 342-347 OrganismTaxon denotes mouse 10088|10090
T7 352-355 OrganismTaxon denotes rat 10114|10116

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 273-277 Body_part denotes tail http://purl.obolibrary.org/obo/UBERON_0002415|http://purl.obolibrary.org/obo/UBERON_4000164

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 571-575 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775