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GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-116 Sentence denotes Identification and characterization of a novel heparinase PCHepII from marine bacterium Puteibacter caeruleilacunae.
T2 117-223 Sentence denotes Heparin (HP) and heparan sulfate (HS) are multifunctional polysaccharides widely used in clinical therapy.
T3 224-449 Sentence denotes Heparinases (Hepases) are enzymes that specifically catalyse HP and HS degradation, and they are valuable tools for studying the structure and function of these polysaccharides and for preparing low molecular weight heparins.
T4 450-606 Sentence denotes In this study, by searching the NCBI database, a novel enzyme named PCHepII was discovered in the genome of the marine bacterium Puteibacter caeruleilacuae.
T5 607-870 Sentence denotes Heterologously expressed PCHepII in Escherichia coli (BL21) has high expression levels and good solubility, active in sodium phosphate buffer (pH 7.0) at 20°C. PCHepII exhibits an enzyme activity of 254 mU/mg towards HP and shows weak degradation capacity for HS.
T6 871-993 Sentence denotes More importantly, PCHepII prefers to catalyse the high-sulfated regions of HP and HS rather than the low-sulfated regions.
T7 994-1147 Sentence denotes Although PCHepII functions primarily as an endolytic Hepase, it mainly generates disaccharide products during the degradation of HP substrates over time.
T8 1148-1288 Sentence denotes Investigations reveal that PCHepII exhibits a preference for catalysing the degradation of small substrates, especially HP tetrasaccharides.
T9 1289-1419 Sentence denotes The catalytic sites of PCHepII include the residues His199, Tyr254, and His403, which play crucial roles in the catalytic process.
T10 1420-1558 Sentence denotes The study and characterization of PCHepII can potentially benefit research and applications involving HP/HS, making it a promising enzyme.

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 134-149 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T2 151-153 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T3 292-294 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T4 867-869 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T5 953-955 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T6 1525-1527 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086

GlyCosmos15-Taxon

Id Subject Object Predicate Lexical cue db_id
T1 88-115 Organism denotes Puteibacter caeruleilacunae 2528631
T2 579-590 Organism denotes Puteibacter 2705385
T3 643-659 Organism denotes Escherichia coli 562

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 548-554 Body_part denotes genome FMA:84116

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 88-115 OrganismTaxon denotes Puteibacter caeruleilacunae 2528631
T2 579-590 OrganismTaxon denotes Puteibacter 2705385
T3 643-659 OrganismTaxon denotes Escherichia coli 562