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PubMed:36202810 JSONTXT

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Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 14-20 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T2 76-82 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T3 196-202 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T4 287-293 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T5 398-404 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T6 554-560 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T7 890-896 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T8 1219-1225 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 41-49 OrganismTaxon denotes bacteria 2|629395
T3 459-487 OrganismTaxon denotes Pseudoalteromonas prydzensis 182141
T4 1283-1302 OrganismTaxon denotes Gammaproteobacteria 1236

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 527-540 Body_part denotes extracellular http://purl.obolibrary.org/obo/GO_0005576
T2 676-689 Body_part denotes Transmembrane http://purl.obolibrary.org/obo/GO_0016020
T3 832-841 Body_part denotes cytoplasm http://purl.obolibrary.org/obo/GO_0005737

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-50 Sentence denotes A pathway for chitin oxidation in marine bacteria.
T2 51-250 Sentence denotes Oxidative degradation of chitin, initiated by lytic polysaccharide monooxygenases (LPMOs), contributes to microbial bioconversion of crystalline chitin, the second most abundant biopolymer in nature.
T3 251-346 Sentence denotes However, our knowledge of oxidative chitin utilization pathways, beyond LPMOs, is very limited.
T4 347-488 Sentence denotes Here, we describe a complete pathway for oxidative chitin degradation and its regulation in a marine bacterium, Pseudoalteromonas prydzensis.
T5 489-675 Sentence denotes The pathway starts with LPMO-mediated extracellular breakdown of chitin into C1-oxidized chitooligosaccharides, which carry a terminal 2-(acetylamino)-2-deoxy-D-gluconic acid (GlcNAc1A).
T6 676-842 Sentence denotes Transmembrane transport of oxidized chitooligosaccharides is followed by their hydrolysis in the periplasm, releasing GlcNAc1A, which is catabolized in the cytoplasm.
T7 843-957 Sentence denotes This pathway differs from the known hydrolytic chitin utilization pathway in enzymes, transporters and regulators.
T8 958-1155 Sentence denotes In particular, GlcNAc1A is converted to 2-keto-3-deoxygluconate 6-phosphate, acetate and NH3 via a series of reactions resembling the degradation of D-amino acids rather than other monosaccharides.
T9 1156-1303 Sentence denotes Furthermore, genomic and metagenomic analyses suggest that the chitin oxidative utilization pathway may be prevalent in marine Gammaproteobacteria.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 14-20 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T2 76-82 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T3 196-202 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T4 287-293 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T5 398-404 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T6 554-560 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T7 890-896 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T8 1219-1225 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 41-49 OrganismTaxon denotes bacteria 2|629395
T3 459-487 OrganismTaxon denotes Pseudoalteromonas prydzensis 182141
T4 1283-1302 OrganismTaxon denotes Gammaproteobacteria 1236

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 527-540 Body_part denotes extracellular http://purl.obolibrary.org/obo/GO_0005576
T2 676-689 Body_part denotes Transmembrane http://purl.obolibrary.org/obo/GO_0016020
T3 832-841 Body_part denotes cytoplasm http://purl.obolibrary.org/obo/GO_0005737