PubMed:36068280
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/36068280","sourcedb":"PubMed","sourceid":"36068280","source_url":"https://www.ncbi.nlm.nih.gov/pubmed/36068280","text":"Study of gut microbiota alterations in Alzheimer's dementia patients from Kazakhstan.\nWe have investigated the diversity and composition of gut microbiotas isolated from AD (Alzheimer's disease) patients (n = 41) and healthy seniors (n = 43) from Nur-Sultan city (Kazakhstan). The composition of the gut microbiota was characterized by 16S ribosomal RNA sequencing. Our results demonstrated significant differences in bacterial abundance at phylum, class, order, and genus levels in AD patients compared to healthy aged individuals. Relative abundance analysis has revealed increased amount of taxa belonging to Acidobacteriota, Verrucomicrobiota, Planctomycetota and Synergistota phyla in AD patients. Among bacterial genera, microbiotas of AD participants were characterized by a decreased amount of Bifidobacterium, Clostridia bacterium, Castellaniella, Erysipelotrichaceae UCG-003, Roseburia, Tuzzerella, Lactobacillaceae and Monoglobus. Differential abundance analysis determined enriched genera of Christensenellaceae R-7 group, Prevotella, Alloprevotella, Eubacterium coprostanoligenes group, Ruminococcus, Flavobacterium, Ohtaekwangia, Akkermansia, Bacteroides sp. Marseille-P3166 in AD patients, whereas Levilactobacillus, Lactiplantibacillus, Tyzzerella, Eubacterium siraeum group, Monoglobus, Bacteroides, Erysipelotrichaceae UCG-003, Veillonella, Faecalibacterium, Roseburia, Haemophilus were depleted. We have also found correlations between some bacteria taxa and blood serum biochemical parameters. Adiponectin was correlated with Acidimicrobiia, Faecalibacterium, Actinobacteria, Oscillospiraceae, Prevotella and Christensenellaceae R-7. The Christensenellaceae R-7 group and Acidobacteriota were correlated with total bilirubin, while Firmicutes, Acidobacteriales bacterium, Castellaniella alcaligenes, Lachnospiraceae, Christensenellaceae and Klebsiella pneumoniae were correlated with the level of CRP in the blood of AD patients. In addition, we report the correlations found between disease severity and certain fecal bacteria. This is the first reported study demonstrating gut microbiota alterations in AD in the Central Asian region.","tracks":[{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":13,"end":23},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":144,"end":155},"obj":"OrganismTaxon"},{"id":"T3","span":{"begin":304,"end":314},"obj":"OrganismTaxon"},{"id":"T4","span":{"begin":612,"end":627},"obj":"OrganismTaxon"},{"id":"T5","span":{"begin":629,"end":646},"obj":"OrganismTaxon"},{"id":"T6","span":{"begin":648,"end":663},"obj":"OrganismTaxon"},{"id":"T7","span":{"begin":668,"end":680},"obj":"OrganismTaxon"},{"id":"T8","span":{"begin":681,"end":686},"obj":"OrganismTaxon"},{"id":"T10","span":{"begin":727,"end":738},"obj":"OrganismTaxon"},{"id":"T11","span":{"begin":802,"end":817},"obj":"OrganismTaxon"},{"id":"T12","span":{"begin":819,"end":829},"obj":"OrganismTaxon"},{"id":"T13","span":{"begin":841,"end":855},"obj":"OrganismTaxon"},{"id":"T14","span":{"begin":857,"end":876},"obj":"OrganismTaxon"},{"id":"T15","span":{"begin":886,"end":895},"obj":"OrganismTaxon"},{"id":"T16","span":{"begin":909,"end":925},"obj":"OrganismTaxon"},{"id":"T17","span":{"begin":930,"end":940},"obj":"OrganismTaxon"},{"id":"T18","span":{"begin":1004,"end":1023},"obj":"OrganismTaxon"},{"id":"T19","span":{"begin":1035,"end":1045},"obj":"OrganismTaxon"},{"id":"T20","span":{"begin":1047,"end":1061},"obj":"OrganismTaxon"},{"id":"T21","span":{"begin":1063,"end":1092},"obj":"OrganismTaxon"},{"id":"T22","span":{"begin":1100,"end":1112},"obj":"OrganismTaxon"},{"id":"T23","span":{"begin":1114,"end":1128},"obj":"OrganismTaxon"},{"id":"T24","span":{"begin":1130,"end":1142},"obj":"OrganismTaxon"},{"id":"T25","span":{"begin":1144,"end":1155},"obj":"OrganismTaxon"},{"id":"T26","span":{"begin":1157,"end":1168},"obj":"OrganismTaxon"},{"id":"T27","span":{"begin":1213,"end":1230},"obj":"OrganismTaxon"},{"id":"T28","span":{"begin":1232,"end":1251},"obj":"OrganismTaxon"},{"id":"T29","span":{"begin":1253,"end":1263},"obj":"OrganismTaxon"},{"id":"T30","span":{"begin":1265,"end":1276},"obj":"OrganismTaxon"},{"id":"T31","span":{"begin":1292,"end":1302},"obj":"OrganismTaxon"},{"id":"T32","span":{"begin":1304,"end":1315},"obj":"OrganismTaxon"},{"id":"T33","span":{"begin":1317,"end":1336},"obj":"OrganismTaxon"},{"id":"T34","span":{"begin":1346,"end":1357},"obj":"OrganismTaxon"},{"id":"T35","span":{"begin":1359,"end":1375},"obj":"OrganismTaxon"},{"id":"T36","span":{"begin":1377,"end":1386},"obj":"OrganismTaxon"},{"id":"T37","span":{"begin":1388,"end":1399},"obj":"OrganismTaxon"},{"id":"T38","span":{"begin":1460,"end":1468},"obj":"OrganismTaxon"},{"id":"T40","span":{"begin":1546,"end":1560},"obj":"OrganismTaxon"},{"id":"T41","span":{"begin":1562,"end":1578},"obj":"OrganismTaxon"},{"id":"T42","span":{"begin":1580,"end":1594},"obj":"OrganismTaxon"},{"id":"T43","span":{"begin":1596,"end":1612},"obj":"OrganismTaxon"},{"id":"T44","span":{"begin":1614,"end":1624},"obj":"OrganismTaxon"},{"id":"T45","span":{"begin":1629,"end":1648},"obj":"OrganismTaxon"},{"id":"T46","span":{"begin":1658,"end":1677},"obj":"OrganismTaxon"},{"id":"T47","span":{"begin":1692,"end":1707},"obj":"OrganismTaxon"},{"id":"T48","span":{"begin":1752,"end":1762},"obj":"OrganismTaxon"},{"id":"T49","span":{"begin":1764,"end":1780},"obj":"OrganismTaxon"},{"id":"T50","span":{"begin":1792,"end":1806},"obj":"OrganismTaxon"},{"id":"T51","span":{"begin":1807,"end":1818},"obj":"OrganismTaxon"},{"id":"T52","span":{"begin":1820,"end":1835},"obj":"OrganismTaxon"},{"id":"T53","span":{"begin":1837,"end":1856},"obj":"OrganismTaxon"},{"id":"T54","span":{"begin":1861,"end":1882},"obj":"OrganismTaxon"},{"id":"T55","span":{"begin":2039,"end":2047},"obj":"OrganismTaxon"},{"id":"T57","span":{"begin":2100,"end":2110},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"13613"},{"id":"A2","pred":"db_id","subj":"T2","obj":"13613"},{"id":"A3","pred":"db_id","subj":"T3","obj":"13613"},{"id":"A4","pred":"db_id","subj":"T4","obj":"57723"},{"id":"A5","pred":"db_id","subj":"T5","obj":"74201"},{"id":"A6","pred":"db_id","subj":"T6","obj":"203682"},{"id":"A7","pred":"db_id","subj":"T7","obj":"508458"},{"id":"A8","pred":"db_id","subj":"T8","obj":"443529"},{"id":"A9","pred":"db_id","subj":"T8","obj":"86858"},{"id":"A10","pred":"db_id","subj":"T10","obj":"13613"},{"id":"A11","pred":"db_id","subj":"T11","obj":"1678"},{"id":"A12","pred":"db_id","subj":"T12","obj":"186801"},{"id":"A13","pred":"db_id","subj":"T13","obj":"359336"},{"id":"A14","pred":"db_id","subj":"T14","obj":"128827"},{"id":"A15","pred":"db_id","subj":"T15","obj":"841"},{"id":"A16","pred":"db_id","subj":"T16","obj":"33958"},{"id":"A17","pred":"db_id","subj":"T17","obj":"2039302"},{"id":"A18","pred":"db_id","subj":"T18","obj":"990719"},{"id":"A19","pred":"db_id","subj":"T19","obj":"838"},{"id":"A20","pred":"db_id","subj":"T20","obj":"1283313"},{"id":"A21","pred":"db_id","subj":"T21","obj":"290054"},{"id":"A22","pred":"db_id","subj":"T22","obj":"1263"},{"id":"A23","pred":"db_id","subj":"T23","obj":"237"},{"id":"A24","pred":"db_id","subj":"T24","obj":"1210119"},{"id":"A25","pred":"db_id","subj":"T25","obj":"239934"},{"id":"A26","pred":"db_id","subj":"T26","obj":"816"},{"id":"A27","pred":"db_id","subj":"T27","obj":"2767886"},{"id":"A28","pred":"db_id","subj":"T28","obj":"2767842"},{"id":"A29","pred":"db_id","subj":"T29","obj":"1506577"},{"id":"A30","pred":"db_id","subj":"T30","obj":"1730"},{"id":"A31","pred":"db_id","subj":"T31","obj":"2039302"},{"id":"A32","pred":"db_id","subj":"T32","obj":"816"},{"id":"A33","pred":"db_id","subj":"T33","obj":"128827"},{"id":"A34","pred":"db_id","subj":"T34","obj":"29465"},{"id":"A35","pred":"db_id","subj":"T35","obj":"216851"},{"id":"A36","pred":"db_id","subj":"T36","obj":"841"},{"id":"A37","pred":"db_id","subj":"T37","obj":"724"},{"id":"A38","pred":"db_id","subj":"T38","obj":"2"},{"id":"A39","pred":"db_id","subj":"T38","obj":"629395"},{"id":"A40","pred":"db_id","subj":"T40","obj":"84992"},{"id":"A41","pred":"db_id","subj":"T41","obj":"216851"},{"id":"A42","pred":"db_id","subj":"T42","obj":"201174"},{"id":"A43","pred":"db_id","subj":"T43","obj":"216572"},{"id":"A44","pred":"db_id","subj":"T44","obj":"838"},{"id":"A45","pred":"db_id","subj":"T45","obj":"990719"},{"id":"A46","pred":"db_id","subj":"T46","obj":"990719"},{"id":"A47","pred":"db_id","subj":"T47","obj":"57723"},{"id":"A48","pred":"db_id","subj":"T48","obj":"1239"},{"id":"A49","pred":"db_id","subj":"T49","obj":"204433"},{"id":"A50","pred":"db_id","subj":"T50","obj":"359336"},{"id":"A51","pred":"db_id","subj":"T51","obj":"507"},{"id":"A52","pred":"db_id","subj":"T52","obj":"186803"},{"id":"A53","pred":"db_id","subj":"T53","obj":"990719"},{"id":"A54","pred":"db_id","subj":"T54","obj":"573"},{"id":"A55","pred":"db_id","subj":"T55","obj":"2"},{"id":"A56","pred":"db_id","subj":"T55","obj":"629395"},{"id":"A57","pred":"db_id","subj":"T57","obj":"13613"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"},{"subj":"T3","pred":"source","obj":"NCBITAXON"},{"subj":"T4","pred":"source","obj":"NCBITAXON"},{"subj":"T5","pred":"source","obj":"NCBITAXON"},{"subj":"T6","pred":"source","obj":"NCBITAXON"},{"subj":"T7","pred":"source","obj":"NCBITAXON"},{"subj":"T8","pred":"source","obj":"NCBITAXON"},{"subj":"T10","pred":"source","obj":"NCBITAXON"},{"subj":"T11","pred":"source","obj":"NCBITAXON"},{"subj":"T12","pred":"source","obj":"NCBITAXON"},{"subj":"T13","pred":"source","obj":"NCBITAXON"},{"subj":"T14","pred":"source","obj":"NCBITAXON"},{"subj":"T15","pred":"source","obj":"NCBITAXON"},{"subj":"T16","pred":"source","obj":"NCBITAXON"},{"subj":"T17","pred":"source","obj":"NCBITAXON"},{"subj":"T18","pred":"source","obj":"NCBITAXON"},{"subj":"T19","pred":"source","obj":"NCBITAXON"},{"subj":"T20","pred":"source","obj":"NCBITAXON"},{"subj":"T21","pred":"source","obj":"NCBITAXON"},{"subj":"T22","pred":"source","obj":"NCBITAXON"},{"subj":"T23","pred":"source","obj":"NCBITAXON"},{"subj":"T24","pred":"source","obj":"NCBITAXON"},{"subj":"T25","pred":"source","obj":"NCBITAXON"},{"subj":"T26","pred":"source","obj":"NCBITAXON"},{"subj":"T27","pred":"source","obj":"NCBITAXON"},{"subj":"T28","pred":"source","obj":"NCBITAXON"},{"subj":"T29","pred":"source","obj":"NCBITAXON"},{"subj":"T30","pred":"source","obj":"NCBITAXON"},{"subj":"T31","pred":"source","obj":"NCBITAXON"},{"subj":"T32","pred":"source","obj":"NCBITAXON"},{"subj":"T33","pred":"source","obj":"NCBITAXON"},{"subj":"T34","pred":"source","obj":"NCBITAXON"},{"subj":"T35","pred":"source","obj":"NCBITAXON"},{"subj":"T36","pred":"source","obj":"NCBITAXON"},{"subj":"T37","pred":"source","obj":"NCBITAXON"},{"subj":"T38","pred":"source","obj":"NCBITAXON"},{"subj":"T40","pred":"source","obj":"NCBITAXON"},{"subj":"T41","pred":"source","obj":"NCBITAXON"},{"subj":"T42","pred":"source","obj":"NCBITAXON"},{"subj":"T43","pred":"source","obj":"NCBITAXON"},{"subj":"T44","pred":"source","obj":"NCBITAXON"},{"subj":"T45","pred":"source","obj":"NCBITAXON"},{"subj":"T46","pred":"source","obj":"NCBITAXON"},{"subj":"T47","pred":"source","obj":"NCBITAXON"},{"subj":"T48","pred":"source","obj":"NCBITAXON"},{"subj":"T49","pred":"source","obj":"NCBITAXON"},{"subj":"T50","pred":"source","obj":"NCBITAXON"},{"subj":"T51","pred":"source","obj":"NCBITAXON"},{"subj":"T52","pred":"source","obj":"NCBITAXON"},{"subj":"T53","pred":"source","obj":"NCBITAXON"},{"subj":"T54","pred":"source","obj":"NCBITAXON"},{"subj":"T55","pred":"source","obj":"NCBITAXON"},{"subj":"T57","pred":"source","obj":"NCBITAXON"}]},{"project":"mondo_disease","denotations":[{"id":"T1","span":{"begin":39,"end":59},"obj":"Disease"},{"id":"T2","span":{"begin":174,"end":193},"obj":"Disease"},{"id":"T3","span":{"begin":1861,"end":1882},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0004975"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0004975"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0030602"},{"subj":"T1","pred":"source","obj":"mondo_disease"},{"subj":"T2","pred":"source","obj":"mondo_disease"},{"subj":"T3","pred":"source","obj":"mondo_disease"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":9,"end":12},"obj":"Body_part"},{"id":"T2","span":{"begin":140,"end":143},"obj":"Body_part"},{"id":"T3","span":{"begin":300,"end":303},"obj":"Body_part"},{"id":"T4","span":{"begin":1063,"end":1074},"obj":"Body_part"},{"id":"T5","span":{"begin":1265,"end":1276},"obj":"Body_part"},{"id":"T6","span":{"begin":1478,"end":1483},"obj":"Body_part"},{"id":"T8","span":{"begin":1928,"end":1933},"obj":"Body_part"},{"id":"T10","span":{"begin":2096,"end":2099},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000043"},{"id":"A2","pred":"mat_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MAT_0000043"},{"id":"A3","pred":"mat_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MAT_0000043"},{"id":"A4","pred":"mat_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MAT_0000191"},{"id":"A5","pred":"mat_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MAT_0000191"},{"id":"A6","pred":"mat_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MAT_0000083"},{"id":"A7","pred":"mat_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MAT_0000315"},{"id":"A8","pred":"mat_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MAT_0000083"},{"id":"A9","pred":"mat_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MAT_0000315"},{"id":"A10","pred":"mat_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MAT_0000043"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"},{"subj":"T2","pred":"source","obj":"Anatomy-MAT"},{"subj":"T3","pred":"source","obj":"Anatomy-MAT"},{"subj":"T4","pred":"source","obj":"Anatomy-MAT"},{"subj":"T5","pred":"source","obj":"Anatomy-MAT"},{"subj":"T6","pred":"source","obj":"Anatomy-MAT"},{"subj":"T8","pred":"source","obj":"Anatomy-MAT"},{"subj":"T10","pred":"source","obj":"Anatomy-MAT"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":9,"end":12},"obj":"Body_part"},{"id":"T4","span":{"begin":140,"end":143},"obj":"Body_part"},{"id":"T7","span":{"begin":300,"end":303},"obj":"Body_part"},{"id":"T10","span":{"begin":340,"end":353},"obj":"Body_part"},{"id":"T11","span":{"begin":1478,"end":1489},"obj":"Body_part"},{"id":"T12","span":{"begin":1928,"end":1933},"obj":"Body_part"},{"id":"T13","span":{"begin":2096,"end":2099},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0001007"},{"id":"A2","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0001555"},{"id":"A3","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0004907"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0001007"},{"id":"A5","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0001555"},{"id":"A6","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0004907"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0001007"},{"id":"A8","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0001555"},{"id":"A9","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0004907"},{"id":"A10","pred":"uberon_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/GO_0005840"},{"id":"A11","pred":"uberon_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A12","pred":"uberon_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A13","pred":"uberon_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/UBERON_0001007"},{"id":"A14","pred":"uberon_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/UBERON_0001555"},{"id":"A15","pred":"uberon_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/UBERON_0004907"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T4","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T7","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T10","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T11","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T12","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T13","pred":"source","obj":"Anatomy-UBERON"}]},{"project":"HP-phenotype","denotations":[{"id":"T1","span":{"begin":51,"end":59},"obj":"Phenotype"},{"id":"T2","span":{"begin":174,"end":193},"obj":"Phenotype"},{"id":"T3","span":{"begin":1872,"end":1882},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"HP:0000726"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"HP:0002511"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"HP:0002090"},{"subj":"T1","pred":"source","obj":"HP-phenotype"},{"subj":"T2","pred":"source","obj":"HP-phenotype"},{"subj":"T3","pred":"source","obj":"HP-phenotype"}],"namespaces":[{"prefix":"HP","uri":"http://purl.obolibrary.org/obo/HP_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"NCBITAXON","color":"#e393ec","default":true},{"id":"mondo_disease","color":"#93ecc9"},{"id":"Anatomy-MAT","color":"#ecaf93"},{"id":"Anatomy-UBERON","color":"#9593ec"},{"id":"HP-phenotype","color":"#aaec93"}]}]}}