PubMed:33180932
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 0-7 | Body_part | denotes | Thyroid | http://purl.org/sig/ont/fma/fma9603 |
| T2 | 92-99 | Body_part | denotes | thyroid | http://purl.org/sig/ont/fma/fma9603 |
| T3 | 100-104 | Body_part | denotes | axis | http://purl.org/sig/ont/fma/fma12520 |
| T4 | 205-212 | Body_part | denotes | thyroid | http://purl.org/sig/ont/fma/fma9603 |
| T5 | 295-302 | Body_part | denotes | thyroid | http://purl.org/sig/ont/fma/fma9603 |
| T6 | 648-655 | Body_part | denotes | thyroid | http://purl.org/sig/ont/fma/fma9603 |
| T7 | 1173-1180 | Body_part | denotes | thyroid | http://purl.org/sig/ont/fma/fma9603 |
| T8 | 1604-1613 | Body_part | denotes | thyroidal | http://purl.org/sig/ont/fma/fma9603 |
| T9 | 1671-1678 | Body_part | denotes | thyroid | http://purl.org/sig/ont/fma/fma9603 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 0-7 | Body_part | denotes | Thyroid | http://purl.obolibrary.org/obo/UBERON_0002046 |
| T2 | 92-99 | Body_part | denotes | thyroid | http://purl.obolibrary.org/obo/UBERON_0002046 |
| T3 | 205-212 | Body_part | denotes | thyroid | http://purl.obolibrary.org/obo/UBERON_0002046 |
| T4 | 295-302 | Body_part | denotes | thyroid | http://purl.obolibrary.org/obo/UBERON_0002046 |
| T5 | 648-655 | Body_part | denotes | thyroid | http://purl.obolibrary.org/obo/UBERON_0002046 |
| T6 | 1173-1180 | Body_part | denotes | thyroid | http://purl.obolibrary.org/obo/UBERON_0002046 |
| T7 | 1671-1678 | Body_part | denotes | thyroid | http://purl.obolibrary.org/obo/UBERON_0002046 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 42-50 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T2 | 76-84 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T3 | 171-185 | Disease | denotes | thyrotoxicosis | http://purl.obolibrary.org/obo/MONDO_0010138 |
| T4 | 283-291 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T5 | 372-380 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T6 | 556-564 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T7 | 648-663 | Disease | denotes | thyroid disease | http://purl.obolibrary.org/obo/MONDO_0003240 |
| T8 | 756-764 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T9 | 892-900 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T10 | 959-967 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T11 | 1016-1030 | Disease | denotes | thyrotoxicosis | http://purl.obolibrary.org/obo/MONDO_0010138 |
| T12 | 1046-1054 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T13 | 1115-1123 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T14 | 1132-1140 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T15 | 1336-1344 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T16 | 1503-1511 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T17 | 1661-1669 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 139-142 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T2 | 232-241 | http://purl.obolibrary.org/obo/BFO_0000030 | denotes | OBJECTIVE |
| T3 | 590-592 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T4 | 1059-1060 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T5 | 1190-1195 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T6 | 1307-1308 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T7 | 1598-1599 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T8 | 1688-1693 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 0-7 | Chemical | denotes | Thyroid | http://purl.obolibrary.org/obo/CHEBI_9584 |
| T2 | 390-396 | Chemical | denotes | Cohort | http://purl.obolibrary.org/obo/CHEBI_34935 |
| T3 | 694-703 | Chemical | denotes | thyroxine | http://purl.obolibrary.org/obo/CHEBI_305790|http://purl.obolibrary.org/obo/CHEBI_30660 |
| T5 | 713-716 | Chemical | denotes | TSH | http://purl.obolibrary.org/obo/CHEBI_137741|http://purl.obolibrary.org/obo/CHEBI_17842 |
| T7 | 805-808 | Chemical | denotes | TSH | http://purl.obolibrary.org/obo/CHEBI_137741|http://purl.obolibrary.org/obo/CHEBI_17842 |
| T9 | 1077-1080 | Chemical | denotes | TSH | http://purl.obolibrary.org/obo/CHEBI_137741|http://purl.obolibrary.org/obo/CHEBI_17842 |
| T11 | 1217-1220 | Chemical | denotes | TSH | http://purl.obolibrary.org/obo/CHEBI_137741|http://purl.obolibrary.org/obo/CHEBI_17842 |
| T13 | 1244-1247 | Chemical | denotes | TSH | http://purl.obolibrary.org/obo/CHEBI_137741|http://purl.obolibrary.org/obo/CHEBI_17842 |
| T15 | 1359-1362 | Chemical | denotes | TSH | http://purl.obolibrary.org/obo/CHEBI_137741|http://purl.obolibrary.org/obo/CHEBI_17842 |
| T17 | 1421-1424 | Chemical | denotes | TSH | http://purl.obolibrary.org/obo/CHEBI_137741|http://purl.obolibrary.org/obo/CHEBI_17842 |
| T19 | 1570-1573 | Chemical | denotes | TSH | http://purl.obolibrary.org/obo/CHEBI_137741|http://purl.obolibrary.org/obo/CHEBI_17842 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1 | 42-50 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 29 | 76-84 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 30 | 171-185 | Disease | denotes | thyrotoxicosis | MESH:D013971 |
| 31 | 283-291 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 32 | 372-380 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 33 | 418-430 | Species | denotes | PARTICIPANTS | Tax:9606 |
| 34 | 450-458 | Species | denotes | patients | Tax:9606 |
| 35 | 556-564 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 36 | 648-663 | Disease | denotes | thyroid disease | MESH:D013959 |
| 37 | 694-703 | Chemical | denotes | thyroxine | MESH:D013974 |
| 38 | 738-746 | Species | denotes | patients | Tax:9606 |
| 39 | 756-764 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 40 | 892-900 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 41 | 926-934 | Species | denotes | patients | Tax:9606 |
| 42 | 959-967 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 43 | 1016-1030 | Disease | denotes | thyrotoxicosis | MESH:D013971 |
| 44 | 1032-1040 | Species | denotes | Patients | Tax:9606 |
| 45 | 1046-1054 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 46 | 1115-1123 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 47 | 1132-1140 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 48 | 1141-1149 | Species | denotes | patients | Tax:9606 |
| 49 | 1336-1344 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 50 | 1345-1353 | Species | denotes | patients | Tax:9606 |
| 51 | 1489-1497 | Species | denotes | patients | Tax:9606 |
| 52 | 1503-1511 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 53 | 1525-1537 | Disease | denotes | euthyroidism | MESH:D005067 |
| 54 | 1604-1630 | Disease | denotes | thyroidal illness syndrome | MESH:D013959 |
| 55 | 1661-1669 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-51 | Sentence | denotes | Thyroid function before, during and after COVID-19. |
| T2 | 52-60 | Sentence | denotes | CONTEXT: |
| T3 | 61-122 | Sentence | denotes | The effects of COVID-19 on the thyroid axis remain uncertain. |
| T4 | 123-231 | Sentence | denotes | Recent evidence has been conflicting, with both thyrotoxicosis and suppression of thyroid function reported. |
| T5 | 232-242 | Sentence | denotes | OBJECTIVE: |
| T6 | 243-381 | Sentence | denotes | We aimed to detail the acute effects of COVID-19 on thyroid function and determine if these effects persisted upon recovery from COVID-19. |
| T7 | 382-389 | Sentence | denotes | DESIGN: |
| T8 | 390-417 | Sentence | denotes | Cohort observational study. |
| T9 | 418-443 | Sentence | denotes | PARTICIPANTS AND SETTING: |
| T10 | 444-730 | Sentence | denotes | Adult patients admitted to Imperial College Healthcare National Health Service Trust, London, UK with suspected COVID-19 between March 9 to April 22, 2020 were included, excluding those with pre-existing thyroid disease and those missing either free thyroxine (FT4) or TSH measurements. |
| T11 | 731-781 | Sentence | denotes | Of 456 patients, 334 had COVID-19 and 122 did not. |
| T12 | 782-911 | Sentence | denotes | MAIN OUTCOME MEASURES: TSH and FT4 measurements at admission, and where available, those taken in 2019 and at COVID-19 follow-up. |
| T13 | 912-920 | Sentence | denotes | RESULTS: |
| T14 | 921-1031 | Sentence | denotes | Most patients (86·6%) presenting with COVID-19 were euthyroid, with none presenting with overt thyrotoxicosis. |
| T15 | 1032-1124 | Sentence | denotes | Patients with COVID-19 had a lower admission TSH and FT4 compared to those without COVID-19. |
| T16 | 1125-1303 | Sentence | denotes | In the COVID-19 patients with matching baseline thyroid function tests from 2019 (n=185 for TSH and 104 for FT4), both TSH and FT4 were reduced at admission compared to baseline. |
| T17 | 1304-1470 | Sentence | denotes | In a complete cases analysis of COVID-19 patients with TSH measurements at follow-up, admission and baseline (n=55), TSH was seen to recover to baseline at follow-up. |
| T18 | 1471-1483 | Sentence | denotes | CONCLUSIONS: |
| T19 | 1484-1538 | Sentence | denotes | Most patients with COVID-19 present with euthyroidism. |
| T20 | 1539-1631 | Sentence | denotes | We observed mild reductions in TSH and FT4 in keeping with a non-thyroidal illness syndrome. |
| T21 | 1632-1728 | Sentence | denotes | Furthermore, in survivors of COVID-19, thyroid function tests at follow-up returned to baseline. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 648-663 | Phenotype | denotes | thyroid disease | http://purl.obolibrary.org/obo/HP_0000820 |