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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1239-1247 Body_part denotes troponin http://purl.org/sig/ont/fma/fma62338
T2 1399-1404 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T3 1520-1525 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T4 1543-1548 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1399-1404 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T2 1520-1525 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T3 1543-1548 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 39-47 Disease denotes COVID 19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 190-198 Disease denotes COVID 19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 225-249 Disease denotes Coronavirus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 261-270 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 346-355 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 1388-1390 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 69-73 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Test
T2 474-478 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T3 499-503 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T4 816-822 http://purl.obolibrary.org/obo/NCBITaxon_9005 denotes Turkey
T5 917-918 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1065-1070 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T7 1163-1167 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Test
T8 1265-1269 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Test
T9 1331-1333 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T10 1391-1393 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T11 1394-1396 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T12 1399-1404 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T13 1399-1404 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T14 1474-1476 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T15 1501-1503 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T16 1543-1548 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T17 1543-1548 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T18 1909-1910 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1346-1348 Chemical denotes PT http://purl.obolibrary.org/obo/CHEBI_141395
T2 1425-1428 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T3 1434-1438 Chemical denotes urea http://purl.obolibrary.org/obo/CHEBI_16199
T4 1444-1454 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T5 1460-1473 Chemical denotes triglycerides http://purl.obolibrary.org/obo/CHEBI_17855
T6 1479-1485 Chemical denotes sodium http://purl.obolibrary.org/obo/CHEBI_26708
T7 1491-1500 Chemical denotes potassium http://purl.obolibrary.org/obo/CHEBI_26216
T8 1506-1514 Chemical denotes chloride http://purl.obolibrary.org/obo/CHEBI_17996

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1388-1393 http://purl.obolibrary.org/obo/GO_0004111 denotes CK-MB

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 39-47 Disease denotes COVID 19 MESH:C000657245
3 190-198 Disease denotes COVID 19 MESH:C000657245
19 225-249 Disease denotes Coronavirus Disease 2019 MESH:C000657245
20 251-259 Disease denotes Covid-19 MESH:C000657245
21 261-270 Disease denotes infection MESH:D007239
22 346-355 Disease denotes infection MESH:D007239
23 559-567 Disease denotes Covid-19 MESH:C000657245
24 783-791 Disease denotes Covid-19 MESH:C000657245
25 816-822 Species denotes Turkey Tax:9103
26 991-999 Species denotes patients Tax:9606
27 1434-1438 Chemical denotes urea MESH:D014508
28 1444-1454 Chemical denotes creatinine MESH:D003404
29 1460-1473 Chemical denotes triglycerides MESH:D014280
30 1479-1485 Chemical denotes sodium MESH:D012964
31 1491-1500 Chemical denotes potassium MESH:D011188
32 1506-1514 Chemical denotes chloride MESH:D002712
33 1724-1731 Species denotes patient Tax:9606

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-57 Sentence denotes Adaptation of Clinical Laboratories to COVID 19 Pandemic:
T2 58-208 Sentence denotes Changes in Test Panels, Overcoming Problems and Preparation Suggestions for Future Pandemics Adaptation of Clinical Laboratories to COVID 19 Pandemic.
T3 209-220 Sentence denotes BACKGROUND:
T4 221-415 Sentence denotes For Coronavirus Disease 2019 (Covid-19) infection, clinical laboratories provide essential contributions in the diagnosis of infection, stage prognostication, and evaluation of disease severity.
T5 416-691 Sentence denotes We aimed to show laboratory problems including changes of test numbers, changes of test panels, and differences of preanalytical errors during Covid-19 pandemic and, in the current study, we also intended to give solutions for the obstacles to guide other possible pandemics.
T6 692-700 Sentence denotes METHODS:
T7 701-772 Sentence denotes Our study was based on data between January 10, 2020, and May 10, 2020.
T8 773-907 Sentence denotes The first Covid-19 case of the Republic of Turkey was seen March 10, 2020, which was determined as the threshold date for comparisons.
T9 908-967 Sentence denotes This was a single center, data mining, retrospective study.
T10 968-976 Sentence denotes RESULTS:
T11 977-1162 Sentence denotes The number of patients admitted to hospital were 34,260 and 15,573, the number of total tests were 66,263 and 42,066 before and after pandemic, respectively, for the two-month interval.
T12 1163-1264 Sentence denotes Test percentage changes were increased for D-dimer 136%, fibrinogen 3,113%, troponin 6%, and LDH 17%.
T13 1265-1561 Sentence denotes Test percentage changes were decreased for CBC 37%, sedimentation 45%, aPTT 30%, PT 37%, CRP 28%, ProCT 10%, ferritin 29%, CK-MB 27%, blood gases 47%, ALT 43%, AST 42%, urea 42%, creatinine 42%, triglycerides 45%, sodium 42%, potassium 41%, chloride 21%, urine culture 58%, and blood culture 44%.
T14 1562-1643 Sentence denotes When preanalytical sources of errors were investigated no differences were found.
T15 1644-1656 Sentence denotes CONCLUSIONS:
T16 1657-1758 Sentence denotes Laboratories must take quick action and be prepared for changes in patient services during pandemics.
T17 1759-1940 Sentence denotes The most reliable ways for this are past experiences, statistical analysis, co-operation with administrations, high quality communication skills, and a risk-based management system.