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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 33-38 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T2 680-685 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T3 1454-1459 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T4 1478-1484 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T5 1486-1491 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T6 1497-1507 Body_part denotes leukocytes http://purl.org/sig/ont/fma/fma62852

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 33-38 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T2 680-685 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 1454-1459 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T4 1486-1491 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 61-69 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 200-208 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 284-293 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T4 502-510 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 627-635 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 656-660 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 931-939 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 1204-1212 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 1514-1522 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 17-18 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 33-38 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T3 33-38 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T4 162-163 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 424-425 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 609-614 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T7 680-685 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T8 680-685 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T9 742-745 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 770-778 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T11 952-953 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1192-1200 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T13 1413-1414 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1454-1459 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T15 1454-1459 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T16 1478-1484 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 83-96 http://purl.obolibrary.org/obo/GO_0006412 denotes Translational
T2 469-478 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T3 469-478 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T4 1160-1173 http://purl.obolibrary.org/obo/GO_0006412 denotes translational

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 61-69 Disease denotes COVID-19 MESH:C000657245
3 70-78 Species denotes Patients Tax:9606
17 200-208 Disease denotes COVID-19 MESH:C000657245
18 230-235 Disease denotes death MESH:D003643
19 264-272 Species denotes patients Tax:9606
20 284-293 Disease denotes infection MESH:D007239
21 309-315 Species denotes people Tax:9606
22 502-512 Species denotes SARS-CoV-2 Tax:2697049
23 627-637 Species denotes SARS-CoV-2 Tax:2697049
24 656-665 Species denotes SARS-CoV2 Tax:2697049
25 931-939 Disease denotes COVID-19 MESH:C000657245
26 940-948 Species denotes patients Tax:9606
27 1204-1212 Disease denotes COVID-19 MESH:C000657245
28 1514-1522 Disease denotes COVID-19 MESH:C000657245
29 1523-1531 Species denotes patients Tax:9606

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-106 Sentence denotes Establishment of a Collection of Blood-Derived Products from COVID-19 Patients for Translational Research:
T2 107-153 Sentence denotes Experience of the LPCE Biobank (Nice, France).
T3 154-378 Sentence denotes In only a few months after its inception, the COVID-19 pandemic lead to the death of hundreds of thousands of patients and to the infection of millions of people on most continents, mostly in the United States and in Europe.
T4 379-578 Sentence denotes During this crisis, it was demonstrated that a better understanding of the pathogenicity, virulence, and contagiousness of SARS-CoV-2, all of which were initially underestimated, was urgently needed.
T5 579-818 Sentence denotes The development of diagnostic tests to identify SARS-CoV-2 or to detect anti-SARS-CoV2 antibodies in blood, of vaccines, and of preventive and curative treatments has been relying on intense activity of scientists in academia and industry.
T6 819-992 Sentence denotes It is noteworthy that these scientists depend on the use of high-quality biological samples taken from positive COVID-19 patients in a manner that preserves their integrity.
T7 993-1232 Sentence denotes Given this unique and emergent situation, it was necessary to urgently establish biological collections clinically annotated for immediate development of clinical and translational research projects focusing on COVID-19 biological aspects.
T8 1233-1381 Sentence denotes It is in this very specific context that biobanks must rapidly adapt their infrastructure and/or operational capacity to fulfill new critical needs.
T9 1382-1589 Sentence denotes We report the establishment of a biobank dedicated to the collection of blood-derived products (plasma, serum, and leukocytes) from COVID-19 patients hospitalized in the Nice Pasteur Hospital (Nice, France).