PubMed:33166904
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 312-317 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T2 | 858-868 | Body_part | denotes | parenchyma | http://purl.org/sig/ont/fma/fma45732 |
| T3 | 1023-1033 | Body_part | denotes | lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
| T4 | 1312-1322 | Body_part | denotes | lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
| T5 | 1731-1741 | Body_part | denotes | lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 312-317 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T2 | 858-868 | Body_part | denotes | parenchyma | http://purl.obolibrary.org/obo/UBERON_0000353 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 22-30 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T2 | 31-40 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T3 | 101-110 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T4 | 288-297 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T5 | 519-528 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T6 | 839-848 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T7 | 1345-1354 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T8 | 1488-1497 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T9 | 1569-1578 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T10 | 1696-1705 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T11 | 1795-1804 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 312-317 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T2 | 312-317 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T3 | 318-323 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T4 | 340-349 | http://purl.obolibrary.org/obo/BFO_0000030 | denotes | objective |
| T5 | 1174-1175 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T6 | 1189-1190 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T7 | 1297-1300 | http://purl.obolibrary.org/obo/CLO_0001007 | denotes | 380 |
| T8 | 1541-1543 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1 | 22-40 | Disease | denotes | COVID-19 pneumonia | MESH:C000657245 |
| 17 | 92-110 | Disease | denotes | Covid-19 pneumonia | MESH:C000657245 |
| 18 | 160-169 | Disease | denotes | mortality | MESH:D003643 |
| 19 | 279-297 | Disease | denotes | Covid-19 pneumonia | MESH:C000657245 |
| 20 | 519-528 | Disease | denotes | pneumonia | MESH:D011014 |
| 21 | 839-848 | Disease | denotes | pneumonia | MESH:D011014 |
| 22 | 985-993 | Species | denotes | patients | Tax:9606 |
| 23 | 1044-1047 | Gene | denotes | CRP | Gene:1401 |
| 24 | 1149-1157 | Species | denotes | Patients | Tax:9606 |
| 25 | 1345-1354 | Disease | denotes | pneumonia | MESH:D011014 |
| 26 | 1467-1475 | Species | denotes | patients | Tax:9606 |
| 27 | 1488-1497 | Disease | denotes | pneumonia | MESH:D011014 |
| 28 | 1569-1578 | Disease | denotes | pneumonia | MESH:D011014 |
| 29 | 1687-1705 | Disease | denotes | Covid-19 pneumonia | MESH:C000657245 |
| 30 | 1727-1730 | Gene | denotes | CRP | Gene:1401 |
| 31 | 1795-1804 | Disease | denotes | pneumonia | MESH:D011014 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-77 | Sentence | denotes | Determining extent of COVID-19 pneumonia on CT based on biological variables. |
| T2 | 78-91 | Sentence | denotes | INTRODUCTION: |
| T3 | 92-170 | Sentence | denotes | Covid-19 pneumonia CT extent correlates well with outcome including mortality. |
| T4 | 171-225 | Sentence | denotes | However, CT is not widely available in many countries. |
| T5 | 226-335 | Sentence | denotes | This study aimed to explore the relationship between Covid-19 pneumonia CT extent and blood tests variations. |
| T6 | 336-529 | Sentence | denotes | The objective was to determine for the biological variables correlating with disease severity the cut-off values showing the best performance to predict the parenchymal extent of the pneumonia. |
| T7 | 530-538 | Sentence | denotes | METHODS: |
| T8 | 539-641 | Sentence | denotes | Bivariate correlations were calculated between biological variables and grade of disease extent on CT. |
| T9 | 642-770 | Sentence | denotes | Receiving Operating Characteristic curve analysis determined the best cutoffs for the strongest correlated biological variables. |
| T10 | 771-893 | Sentence | denotes | The performance of these variables to predict mild (<10%) or severe pneumonia (>50% of parenchyma involved) was evaluated. |
| T11 | 894-902 | Sentence | denotes | RESULTS: |
| T12 | 903-1017 | Sentence | denotes | Correlations between biological variables and disease extent was evaluated in 168 patients included in this study. |
| T13 | 1018-1148 | Sentence | denotes | LDH, lymphocyte count and CRP showed the strongest correlations (with 0.67, -0.41 and 0.52 correlation coefficient, respectively). |
| T14 | 1149-1236 | Sentence | denotes | Patients were split into a training and a validation cohort according to their centers. |
| T15 | 1237-1403 | Sentence | denotes | If one variable was above/below the following cut-offs, LDH>380, CRP>80 or lymphocyte count <0.8G/L, severe pneumonia extent on CT was detected with 100% sensitivity. |
| T16 | 1404-1505 | Sentence | denotes | Values above/below all three thresholds were denoted in 73% of patients with severe pneumonia extent. |
| T17 | 1506-1618 | Sentence | denotes | The combination of LDH<220 and CRP<22 was associated with mild pneumonia extent (<10%) with specificity of 100%. |
| T18 | 1619-1712 | Sentence | denotes | DISCUSSION: LDH showed the strongest correlation with the extent of Covid-19 pneumonia on CT. |
| T19 | 1713-1835 | Sentence | denotes | Combined with CRP±lymphocyte count, it helps predicting parenchymal extent of the pneumonia when CT scan is not available. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 31-40 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T2 | 101-110 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T3 | 288-297 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T4 | 519-528 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T5 | 839-848 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T6 | 1345-1354 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T7 | 1488-1497 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T8 | 1569-1578 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T9 | 1696-1705 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T10 | 1795-1804 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |