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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 262-278 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T2 273-278 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T3 657-662 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T4 671-680 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T5 700-706 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T6 714-730 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T7 725-730 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T8 864-869 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T9 894-899 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T10 997-1007 Body_part denotes (Th1) cell http://purl.org/sig/ont/fma/fma84382
T11 1003-1007 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T12 1130-1139 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T13 1149-1165 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T14 1160-1165 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T15 1204-1220 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T16 1215-1220 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T17 1301-1307 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 700-706 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T2 1301-1307 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 450-462 Phenotype denotes nasal polyps http://purl.obolibrary.org/obo/HP_0100582

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 50-58 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 79-103 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T3 105-113 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 136-183 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T5 136-169 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T6 185-193 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 305-313 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 316-325 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T9 422-444 Disease denotes chronic rhinosinusitis http://purl.obolibrary.org/obo/MONDO_0006031
T10 450-462 Disease denotes nasal polyps http://purl.obolibrary.org/obo/MONDO_0006314
T11 500-508 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 511-520 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 606-618 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T14 843-851 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 925-933 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 936-945 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T17 1279-1291 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T18 1333-1341 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 1344-1353 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 1436-1444 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 116-117 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 198-201 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 217-218 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 262-272 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T5 273-278 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6 657-662 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7 714-724 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T8 725-730 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9 864-869 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T10 894-899 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T11 972-982 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T12 1003-1007 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T13 1149-1159 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T14 1160-1165 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15 1204-1214 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T16 1215-1220 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 762-773 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 606-618 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T2 1279-1291 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 50-58 Disease denotes COVID-19 MESH:C000657245
20 79-103 Disease denotes Coronavirus disease 2019 MESH:C000657245
21 105-113 Disease denotes COVID-19 MESH:C000657245
22 136-183 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
23 185-195 Species denotes SARS-CoV-2 Tax:2697049
24 310-325 Disease denotes CoV-2 infection MESH:C000657245
25 430-462 Disease denotes rhinosinusitis with nasal polyps MESH:D009298
26 500-520 Disease denotes SARS-CoV-2 infection MESH:C000657245
27 606-618 Disease denotes inflammation MESH:D007249
28 762-793 Gene denotes angiotensin-converting enzyme 2 Gene:59272
29 795-799 Gene denotes ACE2 Gene:59272
30 843-853 Species denotes SARS-CoV-2 Tax:2697049
31 925-945 Disease denotes SARS-CoV-2 infection MESH:C000657245
32 1055-1059 Gene denotes ACE2 Gene:59272
33 1190-1194 Gene denotes ACE2 Gene:59272
34 1279-1291 Disease denotes inflammation MESH:D007249
35 1333-1353 Disease denotes SARS-CoV-2 infection MESH:C000657245
36 1370-1374 Gene denotes ACE2 Gene:59272
37 1436-1444 Disease denotes COVID-19 MESH:C000657245

Inflammaging

Id Subject Object Predicate Lexical cue
T1 0-59 Sentence denotes Inflammatory endotypes of CRSwNP and responses to COVID-19.
T2 60-78 Sentence denotes PURPOSE OF REVIEW:
T3 79-255 Sentence denotes Coronavirus disease 2019 (COVID-19), a disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has quickly become a great public health hazard globally.
T4 256-342 Sentence denotes Nasal epithelial cells are an important site for SARS-CoV-2 infection and replication.
T5 343-521 Sentence denotes The purpose of this review is to summarize recent findings on the endotypes of chronic rhinosinusitis with nasal polyps (CRSwNP) and the potential impact of SARS-CoV-2 infection.
T6 522-538 Sentence denotes RECENT FINDINGS:
T7 539-707 Sentence denotes Endotypes of CRSwNP are characterized by type 1, type 2 and type 3 inflammation according to patterns of inflammatory cells and the cytokines expressed in nasal tissue.
T8 708-924 Sentence denotes Nasal epithelial cells show the highest expression of angiotensin-converting enzyme 2 (ACE2), the receptor for attachment and entry of SARS-CoV-2 into host cells, among all investigated cells in the respiratory tree.
T9 925-1018 Sentence denotes SARS-CoV-2 infection likely leads to increased activation of T-helper-1 (Th1) cell responses.
T10 1019-1166 Sentence denotes Recent studies further suggest that ACE2 may be upregulated by type 1 and downregulated by type 2 inflammatory cytokines in nasal epithelial cells.
T11 1167-1175 Sentence denotes SUMMARY:
T12 1176-1271 Sentence denotes Expression of ACE2 in nasal epithelial cells is influenced by inflammatory endotypes of CRSwNP.
T13 1272-1386 Sentence denotes Type 1 inflammation in nasal tissue may increase the risk of SARS-CoV-2 infection by upregulating ACE2 expression.
T14 1387-1462 Sentence denotes However, clinical association between CRSwNP and COVID-19 is still unclear.
T1 0-59 Sentence denotes Inflammatory endotypes of CRSwNP and responses to COVID-19.
T2 60-78 Sentence denotes PURPOSE OF REVIEW:
T3 79-255 Sentence denotes Coronavirus disease 2019 (COVID-19), a disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has quickly become a great public health hazard globally.
T4 256-342 Sentence denotes Nasal epithelial cells are an important site for SARS-CoV-2 infection and replication.
T5 343-521 Sentence denotes The purpose of this review is to summarize recent findings on the endotypes of chronic rhinosinusitis with nasal polyps (CRSwNP) and the potential impact of SARS-CoV-2 infection.
T6 522-538 Sentence denotes RECENT FINDINGS:
T7 539-707 Sentence denotes Endotypes of CRSwNP are characterized by type 1, type 2 and type 3 inflammation according to patterns of inflammatory cells and the cytokines expressed in nasal tissue.
T8 708-924 Sentence denotes Nasal epithelial cells show the highest expression of angiotensin-converting enzyme 2 (ACE2), the receptor for attachment and entry of SARS-CoV-2 into host cells, among all investigated cells in the respiratory tree.
T9 925-1018 Sentence denotes SARS-CoV-2 infection likely leads to increased activation of T-helper-1 (Th1) cell responses.
T10 1019-1166 Sentence denotes Recent studies further suggest that ACE2 may be upregulated by type 1 and downregulated by type 2 inflammatory cytokines in nasal epithelial cells.
T11 1167-1175 Sentence denotes SUMMARY:
T12 1176-1271 Sentence denotes Expression of ACE2 in nasal epithelial cells is influenced by inflammatory endotypes of CRSwNP.
T13 1272-1386 Sentence denotes Type 1 inflammation in nasal tissue may increase the risk of SARS-CoV-2 infection by upregulating ACE2 expression.
T14 1387-1462 Sentence denotes However, clinical association between CRSwNP and COVID-19 is still unclear.

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-59 Sentence denotes Inflammatory endotypes of CRSwNP and responses to COVID-19.
T2 60-78 Sentence denotes PURPOSE OF REVIEW:
T3 79-255 Sentence denotes Coronavirus disease 2019 (COVID-19), a disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has quickly become a great public health hazard globally.
T4 256-342 Sentence denotes Nasal epithelial cells are an important site for SARS-CoV-2 infection and replication.
T5 343-521 Sentence denotes The purpose of this review is to summarize recent findings on the endotypes of chronic rhinosinusitis with nasal polyps (CRSwNP) and the potential impact of SARS-CoV-2 infection.
T6 522-538 Sentence denotes RECENT FINDINGS:
T7 539-707 Sentence denotes Endotypes of CRSwNP are characterized by type 1, type 2 and type 3 inflammation according to patterns of inflammatory cells and the cytokines expressed in nasal tissue.
T8 708-924 Sentence denotes Nasal epithelial cells show the highest expression of angiotensin-converting enzyme 2 (ACE2), the receptor for attachment and entry of SARS-CoV-2 into host cells, among all investigated cells in the respiratory tree.
T9 925-1018 Sentence denotes SARS-CoV-2 infection likely leads to increased activation of T-helper-1 (Th1) cell responses.
T10 1019-1166 Sentence denotes Recent studies further suggest that ACE2 may be upregulated by type 1 and downregulated by type 2 inflammatory cytokines in nasal epithelial cells.
T11 1167-1175 Sentence denotes SUMMARY:
T12 1176-1271 Sentence denotes Expression of ACE2 in nasal epithelial cells is influenced by inflammatory endotypes of CRSwNP.
T13 1272-1386 Sentence denotes Type 1 inflammation in nasal tissue may increase the risk of SARS-CoV-2 infection by upregulating ACE2 expression.
T14 1387-1462 Sentence denotes However, clinical association between CRSwNP and COVID-19 is still unclear.

LitCovid_AGAC_only

Id Subject Object Predicate Lexical cue
p284353s19 1370-1374 Gene denotes ACE2
p284353s20 1375-1385 MPA denotes expression