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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 101-105 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T2 301-307 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T3 533-537 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T4 711-716 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T5 754-759 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T6 860-865 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 101-105 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T2 301-307 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T3 533-537 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T4 711-716 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 754-759 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 860-865 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 28-40 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T2 44-52 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 53-62 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 101-113 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T5 164-172 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 173-182 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 187-222 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T8 193-222 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T9 295-314 Disease denotes acute kidney injury http://purl.obolibrary.org/obo/MONDO_0002492
T10 308-314 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T11 316-322 Disease denotes stroke http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057
T13 365-371 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T14 414-426 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T15 444-452 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 533-545 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T17 601-620 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T18 634-642 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 643-652 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T20 682-684 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T21 787-799 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T22 904-916 Disease denotes pneumothorax http://purl.obolibrary.org/obo/MONDO_0002076
T23 1145-1153 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 1154-1163 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 66-67 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 101-105 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T4 101-105 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T5 301-307 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T6 301-307 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T7 301-307 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T8 490-491 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 533-537 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T10 533-537 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T11 711-716 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T12 752-753 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T13 754-759 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T14 773-774 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 860-865 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T16 866-871 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tubes

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
4 20-40 Disease denotes tension pneumothorax MESH:D011030
5 44-62 Disease denotes COVID-19 pneumonia MESH:C000657245
6 68-75 Species denotes patient Tax:9606
7 101-113 Disease denotes lung disease MESH:D008171
26 143-151 Species denotes patients Tax:9606
27 164-182 Disease denotes COVID-19 pneumonia MESH:C000657245
28 187-222 Disease denotes acute respiratory distress syndrome MESH:D012128
29 295-314 Disease denotes acute kidney injury MESH:D058186
30 316-322 Disease denotes stroke MESH:D020521
31 324-348 Disease denotes thromboembolic phenomena MESH:D013923
32 354-371 Disease denotes myocardial injury MESH:D009202
33 406-426 Disease denotes tension pneumothorax MESH:D011030
34 430-438 Species denotes patients Tax:9606
35 444-452 Disease denotes COVID-19 MESH:C000657245
36 533-545 Disease denotes lung disease MESH:D008171
37 593-620 Disease denotes hypoxic respiratory failure MESH:D012131
38 634-652 Disease denotes COVID-19 pneumonia MESH:C000657245
39 711-721 Disease denotes chest pain MESH:D002637
40 742-750 Disease denotes coughing MESH:D003371
41 787-799 Disease denotes pneumothorax MESH:D011030
42 904-916 Disease denotes pneumothorax MESH:D011030
43 1145-1163 Disease denotes COVID-19 pneumonia MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-114 Sentence denotes A case of secondary tension pneumothorax in COVID-19 pneumonia in a patient with no prior history of lung disease.
T2 115-372 Sentence denotes Complications that arise in patients with severe COVID-19 pneumonia are acute respiratory distress syndrome, often leading to mechanical ventilation, shock requiring vasopressors, acute kidney injury, stroke, thromboembolic phenomena, and myocardial injury.
T3 373-478 Sentence denotes To date, there are four cases of tension pneumothorax in patients with COVID-19, published in literature.
T4 479-653 Sentence denotes We present a 33-year-old man with no prior history of lung disease who was admitted to our hospital on account of hypoxic respiratory failure secondary to COVID-19 pneumonia.
T5 654-751 Sentence denotes During his hospitalization, he developed sudden onset of chest pain which worsened with coughing.
T6 752-834 Sentence denotes A chest X-ray showed a right-sided pneumothorax with left-sided mediastinal shift.
T7 835-936 Sentence denotes He required placement of chest tubes with eventual resolution of the pneumothorax several days later.
T8 937-1164 Sentence denotes This case highlights the need for clinical recognition, consideration of differential diagnoses, prompt evaluation, appropriate imaging, and management of this severe life-threatening unusual complication of COVID-19 pneumonia.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 28-40 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T2 53-62 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 101-113 Phenotype denotes lung disease http://purl.obolibrary.org/obo/HP_0002088
T4 173-182 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 193-213 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T6 265-270 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T7 295-314 Phenotype denotes acute kidney injury http://purl.obolibrary.org/obo/HP_0001919
T8 316-322 Phenotype denotes stroke http://purl.obolibrary.org/obo/HP_0001297
T9 324-338 Phenotype denotes thromboembolic http://purl.obolibrary.org/obo/HP_0001907
T10 414-426 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T11 533-545 Phenotype denotes lung disease http://purl.obolibrary.org/obo/HP_0002088
T12 601-620 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T13 643-652 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T14 711-721 Phenotype denotes chest pain http://purl.obolibrary.org/obo/HP_0100749
T15 742-750 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T16 787-799 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T17 904-916 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T18 1154-1163 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090