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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 479-490 Body_part denotes right heart http://purl.org/sig/ont/fma/fma7165
T2 610-616 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T3 1338-1349 Body_part denotes right heart http://purl.org/sig/ont/fma/fma7165
T4 1370-1386 Body_part denotes pulmonary artery http://purl.org/sig/ont/fma/fma66326

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 485-490 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T2 610-616 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T3 1344-1349 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T4 1370-1386 Body_part denotes pulmonary artery http://purl.obolibrary.org/obo/UBERON_0002012
T5 1380-1386 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 8-26 Disease denotes Pulmonary Embolism http://purl.obolibrary.org/obo/MONDO_0005279
T2 40-64 Disease denotes Coronavirus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T3 66-74 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 76-85 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T5 135-143 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 144-153 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 158-173 Disease denotes hypercoagulable http://purl.obolibrary.org/obo/MONDO_0002305
T8 200-218 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T9 347-366 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T10 421-429 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 430-439 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T12 455-473 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T13 485-498 Disease denotes heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T14 605-616 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T15 678-680 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T16 746-754 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 757-766 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 883-885 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T19 967-986 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T20 994-1002 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 1003-1012 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T22 1025-1027 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T23 1110-1112 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T24 1576-1580 Disease denotes CTPA http://purl.obolibrary.org/obo/MONDO_0007288
T25 1822-1830 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 2023-2027 Disease denotes CTPA http://purl.obolibrary.org/obo/MONDO_0007288

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 87-88 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 485-490 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T3 485-490 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T4 485-490 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T5 485-490 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T6 529-530 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T7 603-604 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 638-639 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T9 869-870 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T10 1344-1349 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T11 1344-1349 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T12 1344-1349 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T13 1344-1349 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T14 1370-1386 http://purl.obolibrary.org/obo/UBERON_0002012 denotes pulmonary artery
T15 1370-1386 http://www.ebi.ac.uk/efo/EFO_0001399 denotes pulmonary artery
T16 1408-1410 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T17 1444-1445 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 1454-1460 http://purl.obolibrary.org/obo/NCBITaxon_314295 denotes APE as
T19 1504-1505 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 1843-1844 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 594-596 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T2 859-861 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T3 1248-1251 Chemical denotes ECG http://purl.obolibrary.org/obo/CHEBI_70255
T4 2004-2007 Chemical denotes ECG http://purl.obolibrary.org/obo/CHEBI_70255

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 788-801 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 788-801 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 8-59 Disease denotes Pulmonary Embolism Complicating Coronavirus Disease MESH:D011655
3 60-85 Disease denotes 2019 (COVID-19) Pneumonia MESH:C000657245
25 114-122 Species denotes Patients Tax:9606
26 135-153 Disease denotes COVID-19 pneumonia MESH:C000657245
27 194-218 Disease denotes acute pulmonary embolism MESH:D011655
28 347-366 Disease denotes respiratory failure MESH:D012131
29 421-439 Disease denotes COVID-19 pneumonia MESH:C000657245
30 449-473 Disease denotes acute pulmonary embolism MESH:D011655
31 479-498 Disease denotes right heart failure MESH:D006333
32 605-616 Disease denotes sore throat MESH:D010608
33 618-623 Disease denotes cough MESH:D003371
34 629-636 Disease denotes myalgia MESH:D063806
35 746-766 Disease denotes SARS-CoV-2 infection MESH:C000657245
36 913-932 Disease denotes shortness of breath MESH:D004417
37 959-986 Disease denotes hypoxic respiratory failure MESH:D012131
38 994-1012 Disease denotes COVID-19 pneumonia MESH:C000657245
39 1261-1278 Disease denotes sinus tachycardia MESH:D013616
40 1454-1457 Gene denotes APE Gene:328
41 1815-1818 Gene denotes APE Gene:328
42 1822-1830 Disease denotes COVID-19 MESH:C000657245
43 1831-1839 Species denotes patients Tax:9606
44 2023-2027 Chemical denotes CTPA
45 2061-2068 Species denotes patient Tax:9606

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-86 Sentence denotes Massive Pulmonary Embolism Complicating Coronavirus Disease 2019 (COVID-19) Pneumonia:
T2 87-101 Sentence denotes A Case Report.
T3 102-113 Sentence denotes Background:
T4 114-219 Sentence denotes Patients with severe COVID-19 pneumonia are hypercoagulable and are at risk for acute pulmonary embolism.
T5 220-284 Sentence denotes Timely diagnosis is imperative for their prognosis and recovery.
T6 285-440 Sentence denotes This case describes an otherwise healthy 55-year-old man with respiratory failure requiring mechanical ventilatory support secondary to COVID-19 pneumonia.
T7 441-522 Sentence denotes Massive acute pulmonary embolism with right heart failure complicated his course.
T8 523-528 Sentence denotes Case:
T9 529-637 Sentence denotes A healthy 55-year-old man presented to our emergency department (ED) with a sore throat, cough, and myalgia.
T10 638-716 Sentence denotes A nasopharyngeal swab was obtained, and he was discharged for home quarantine.
T11 717-868 Sentence denotes His swab turned positive for SARS-CoV-2 infection on real-time reverse transcriptase-polymerase chain reaction assay (RT-PCR) on day 2 of his ED visit.
T12 869-1013 Sentence denotes A week later, he represented with worsening shortness of breath, requiring intubation for hypoxic respiratory failure due to COVID-19 pneumonia.
T13 1014-1099 Sentence denotes Initially, he was easy to oxygenate, had no hemodynamic compromise, and was afebrile.
T14 1100-1243 Sentence denotes On day 3, he became febrile and developed significant hemodynamic instability requiring maximum vasopressor support and oxygenation difficulty.
T15 1244-1299 Sentence denotes His ECG revealed sinus tachycardia with S1Q3T3 pattern.
T16 1300-1416 Sentence denotes On bedside TTE, there was evidence of right heart strain and elevated pulmonary artery systolic pressure of 45 mmHg.
T17 1417-1503 Sentence denotes All data was indicative of a massive APE as the etiology for his hemodynamic collapse.
T18 1504-1666 Sentence denotes A decision was made to forgo computed tomography pulmonary angiography (CTPA), given his clinical instability, and systemic thrombolytic therapy was administered.
T19 1667-1742 Sentence denotes Within the next 12-24 hours, his hemodynamic status significantly improved.
T20 1743-1755 Sentence denotes Conclusions:
T21 1756-1895 Sentence denotes This case highlights the importance of considering massive APE in COVID-19 patients as a cause of the sudden and rapid hemodynamic decline.
T22 1896-2095 Sentence denotes Furthermore, timely diagnosis can be made to aid in appropriate management with the help of bedside TTE and ECG in cases where CTPA is not feasible secondary to the patient's hemodynamic instability.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 8-26 Phenotype denotes Pulmonary Embolism http://purl.obolibrary.org/obo/HP_0002204
T2 76-85 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 144-153 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 200-218 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T5 347-366 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T6 430-439 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 455-473 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T8 485-498 Phenotype denotes heart failure http://purl.obolibrary.org/obo/HP_0001635
T9 605-616 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T10 618-623 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T11 629-636 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T12 913-932 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T13 967-986 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T14 1003-1012 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 1261-1278 Phenotype denotes sinus tachycardia http://purl.obolibrary.org/obo/HP_0011703