PubMed:33116032
Annnotations
LitCovid_Glycan-Motif-Structure
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 423-430 | https://glytoucan.org/Structures/Glycans/G00021MO | denotes | heparin |
T2 | 423-430 | https://glytoucan.org/Structures/Glycans/G54161DR | denotes | heparin |
T3 | 521-528 | https://glytoucan.org/Structures/Glycans/G00021MO | denotes | heparin |
T4 | 521-528 | https://glytoucan.org/Structures/Glycans/G54161DR | denotes | heparin |
T5 | 1263-1270 | https://glytoucan.org/Structures/Glycans/G00021MO | denotes | heparin |
T6 | 1263-1270 | https://glytoucan.org/Structures/Glycans/G54161DR | denotes | heparin |
T7 | 1630-1637 | https://glytoucan.org/Structures/Glycans/G00021MO | denotes | heparin |
T8 | 1630-1637 | https://glytoucan.org/Structures/Glycans/G54161DR | denotes | heparin |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 423-430 | Body_part | denotes | heparin | http://purl.org/sig/ont/fma/fma82839 |
T2 | 521-528 | Body_part | denotes | heparin | http://purl.org/sig/ont/fma/fma82839 |
T3 | 948-954 | Body_part | denotes | Plasma | http://purl.org/sig/ont/fma/fma62970 |
T4 | 1014-1030 | Body_part | denotes | endothelial cell | http://purl.org/sig/ont/fma/fma66772 |
T5 | 1026-1030 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T6 | 1071-1075 | Body_part | denotes | hand | http://purl.org/sig/ont/fma/fma9712 |
T7 | 1077-1083 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T8 | 1263-1270 | Body_part | denotes | heparin | http://purl.org/sig/ont/fma/fma82839 |
T9 | 1630-1637 | Body_part | denotes | heparin | http://purl.org/sig/ont/fma/fma82839 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 1071-1075 | Body_part | denotes | hand | http://purl.obolibrary.org/obo/UBERON_0002398 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T1 | 16-24 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T2 | 66-98 | Disease | denotes | Acquired von Willebrand Syndrome | http://purl.obolibrary.org/obo/MONDO_0020460 |
T3 | 121-129 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T4 | 171-183 | Disease | denotes | coagulopathy | http://purl.obolibrary.org/obo/MONDO_0001531 |
T5 | 194-204 | Disease | denotes | thrombosis | http://purl.obolibrary.org/obo/MONDO_0000831 |
T6 | 206-214 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T7 | 215-224 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T8 | 244-279 | Disease | denotes | acute respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0006502 |
T9 | 250-279 | Disease | denotes | respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0009971 |
T10 | 348-358 | Disease | denotes | thrombosis | http://purl.obolibrary.org/obo/MONDO_0000831 |
T11 | 448-456 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T12 | 539-571 | Disease | denotes | acquired von Willebrand syndrome | http://purl.obolibrary.org/obo/MONDO_0020460 |
T13 | 573-577 | Disease | denotes | AVWS | http://purl.obolibrary.org/obo/MONDO_0020460 |
T14 | 637-641 | Disease | denotes | AVWS | http://purl.obolibrary.org/obo/MONDO_0020460 |
T15 | 645-653 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T16 | 675-683 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T17 | 722-726 | Disease | denotes | AVWS | http://purl.obolibrary.org/obo/MONDO_0020460 |
T18 | 742-786 | Disease | denotes | disseminated intravascular coagulation (DIC) | http://purl.obolibrary.org/obo/MONDO_0001243 |
T19 | 1048-1056 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T20 | 1364-1368 | Disease | denotes | AVWS | http://purl.obolibrary.org/obo/MONDO_0020460 |
T21 | 1384-1392 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T22 | 1591-1595 | Disease | denotes | AVWS | http://purl.obolibrary.org/obo/MONDO_0020460 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 14-15 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T2 | 306-314 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
T3 | 598-601 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T4 | 673-674 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T5 | 948-954 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | Plasma |
T6 | 982-991 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremely |
T7 | 1014-1030 | http://purl.obolibrary.org/obo/CL_0000115 | denotes | endothelial cell |
T8 | 1077-1083 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T9 | 1103-1111 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
T10 | 1248-1249 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T11 | 1409-1410 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T1 | 423-430 | Chemical | denotes | heparin | http://purl.obolibrary.org/obo/CHEBI_28304 |
T2 | 521-528 | Chemical | denotes | heparin | http://purl.obolibrary.org/obo/CHEBI_28304 |
T3 | 782-785 | Chemical | denotes | DIC | http://purl.obolibrary.org/obo/CHEBI_4305|http://purl.obolibrary.org/obo/CHEBI_53092 |
T5 | 969-976 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
T6 | 1263-1270 | Chemical | denotes | heparin | http://purl.obolibrary.org/obo/CHEBI_28304 |
T7 | 1448-1461 | Chemical | denotes | anticoagulant | http://purl.obolibrary.org/obo/CHEBI_50249 |
T8 | 1630-1637 | Chemical | denotes | heparin | http://purl.obolibrary.org/obo/CHEBI_28304 |
T9 | 1642-1645 | Chemical | denotes | DIC | http://purl.obolibrary.org/obo/CHEBI_4305|http://purl.obolibrary.org/obo/CHEBI_53092 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 769-780 | http://purl.obolibrary.org/obo/GO_0050817 | denotes | coagulation |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
3 | 16-24 | Disease | denotes | COVID-19 | MESH:C000657245 |
4 | 25-32 | Species | denotes | Patient | Tax:9606 |
5 | 75-98 | Disease | denotes | von Willebrand Syndrome | MESH:D014842 |
50 | 100-108 | Species | denotes | Patients | Tax:9606 |
51 | 121-129 | Disease | denotes | COVID-19 | MESH:C000657245 |
52 | 171-183 | Disease | denotes | coagulopathy | MESH:D001778 |
53 | 194-204 | Disease | denotes | thrombosis | MESH:D013927 |
54 | 206-224 | Disease | denotes | COVID-19 pneumonia | MESH:C000657245 |
55 | 244-279 | Disease | denotes | acute respiratory distress syndrome | MESH:D012128 |
56 | 348-358 | Disease | denotes | thrombosis | MESH:D013927 |
57 | 363-371 | Disease | denotes | bleeding | MESH:D006470 |
58 | 392-397 | Disease | denotes | death | MESH:D003643 |
59 | 423-430 | Chemical | denotes | heparin | MESH:D006493 |
60 | 448-456 | Disease | denotes | COVID-19 | MESH:C000657245 |
61 | 457-465 | Species | denotes | patients | Tax:9606 |
62 | 484-492 | Disease | denotes | bleeding | MESH:D006470 |
63 | 521-528 | Chemical | denotes | heparin | MESH:D006493 |
64 | 548-571 | Disease | denotes | von Willebrand syndrome | MESH:D014842 |
65 | 573-577 | Disease | denotes | AVWS | |
66 | 624-632 | Disease | denotes | bleeding | MESH:D006470 |
67 | 637-641 | Disease | denotes | AVWS | |
68 | 645-653 | Disease | denotes | COVID-19 | MESH:C000657245 |
69 | 654-662 | Species | denotes | patients | Tax:9606 |
70 | 675-683 | Disease | denotes | COVID-19 | MESH:C000657245 |
71 | 684-691 | Species | denotes | patient | Tax:9606 |
72 | 708-716 | Disease | denotes | bleeding | MESH:D006470 |
73 | 722-726 | Disease | denotes | AVWS | |
74 | 742-780 | Disease | denotes | disseminated intravascular coagulation | MESH:D004211 |
75 | 782-785 | Disease | denotes | DIC | MESH:D004211 |
76 | 835-838 | Gene | denotes | VWF | Gene:7450 |
77 | 965-968 | Gene | denotes | VWF | Gene:7450 |
78 | 1048-1056 | Disease | denotes | COVID-19 | MESH:C000657245 |
79 | 1094-1102 | Gene | denotes | ADAMTS13 | Gene:11093 |
80 | 1162-1169 | Species | denotes | patient | Tax:9606 |
81 | 1219-1227 | Disease | denotes | bleeding | MESH:D006470 |
82 | 1263-1270 | Chemical | denotes | heparin | MESH:D006493 |
83 | 1297-1312 | Disease | denotes | thromboembolism | MESH:D013923 |
84 | 1337-1344 | Species | denotes | patient | Tax:9606 |
85 | 1364-1368 | Disease | denotes | AVWS | |
86 | 1373-1376 | Disease | denotes | DIC | MESH:D004211 |
87 | 1384-1392 | Disease | denotes | COVID-19 | MESH:C000657245 |
88 | 1393-1401 | Species | denotes | patients | Tax:9606 |
89 | 1411-1421 | Disease | denotes | thrombotic | MESH:D013927 |
90 | 1512-1529 | Disease | denotes | bleeding symptoms | MESH:D051271 |
91 | 1591-1595 | Disease | denotes | AVWS | |
92 | 1630-1637 | Chemical | denotes | heparin | MESH:D006493 |
93 | 1642-1645 | Disease | denotes | DIC | MESH:D004211 |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T1 | 171-183 | Phenotype | denotes | coagulopathy | http://purl.obolibrary.org/obo/HP_0003256 |
T2 | 215-224 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T3 | 250-270 | Phenotype | denotes | respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
T4 | 742-780 | Phenotype | denotes | disseminated intravascular coagulation | http://purl.obolibrary.org/obo/HP_0005521 |
T5 | 782-785 | Phenotype | denotes | DIC | http://purl.obolibrary.org/obo/HP_0005521 |
T6 | 1297-1312 | Phenotype | denotes | thromboembolism | http://purl.obolibrary.org/obo/HP_0001907 |
T7 | 1642-1645 | Phenotype | denotes | DIC | http://purl.obolibrary.org/obo/HP_0005521 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-45 | Sentence | denotes | Management of a COVID-19 Patient during ECMO: |
T2 | 46-99 | Sentence | denotes | Paying Attention to Acquired von Willebrand Syndrome. |
T3 | 100-205 | Sentence | denotes | Patients with severe COVID-19 often experience complications including coagulopathy and fatal thrombosis. |
T4 | 206-398 | Sentence | denotes | COVID-19 pneumonia sometimes leads to acute respiratory distress syndrome, requiring extracorporeal membrane oxygenation (ECMO), during which thrombosis and bleeding are major causes of death. |
T5 | 399-579 | Sentence | denotes | Anticoagulation such as heparin is essential for COVID-19 patients on ECMO; however, bleeding might be caused by not only heparin, but also acquired von Willebrand syndrome (AVWS). |
T6 | 580-799 | Sentence | denotes | To date, no study has examined ECMO-related bleeding and AVWS in COVID-19 patients.We report a COVID-19 patient who experienced bleeding from AVWS in addition to disseminated intravascular coagulation (DIC) during ECMO. |
T7 | 800-947 | Sentence | denotes | The level of high-molecular weight VWF multimers decreased during ECMO therapy, and these findings promptly improved after discontinuation of ECMO. |
T8 | 948-1057 | Sentence | denotes | Plasma levels of VWF antigen were extremely high, probably due to endothelial cell damage caused by COVID-19. |
T9 | 1058-1157 | Sentence | denotes | On the other hand, plasma levels of ADAMTS13 activity were moderately reduced, to 20-30% of normal. |
T10 | 1158-1313 | Sentence | denotes | The patient was successfully treated with cryoprecipitate in bleeding during ECMO without a reduction in heparin, which might have induced thromboembolism. |
T11 | 1314-1470 | Sentence | denotes | Bleeding found in this patient might be caused by AVWS and DIC.Severe COVID-19 patients are in a thrombotic state and need to receive anticoagulant therapy. |
T12 | 1471-1548 | Sentence | denotes | However, once they receive ECMO therapy, bleeding symptoms could be observed. |
T13 | 1549-1646 | Sentence | denotes | In such cases, physicians should think of AVWS in addition to the side effect of heparin and DIC. |