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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 38-46 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 126-134 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T3 137-146 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T4 342-350 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 469-477 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 707-715 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 774-782 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 937-945 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 1245-1252 Disease denotes Obesity http://purl.obolibrary.org/obo/MONDO_0011122
T10 1257-1265 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T11 1375-1383 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T12 1508-1516 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 1596-1603 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122
T14 1617-1625 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T15 1670-1678 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 1812-1820 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 1857-1865 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 1908-1915 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 17-24 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T2 52-53 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 181-188 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T4 215-225 http://purl.obolibrary.org/obo/BFO_0000030 denotes OBJECTIVES
T5 321-328 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T6 458-464 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T7 686-693 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T8 746-752 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T9 889-893 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T10 889-893 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T11 1319-1326 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T12 1410-1417 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T13 1477-1482 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T14 1714-1721 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T15 1757-1764 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T16 1823-1828 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T17 1921-1922 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 480-492 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T2 488-492 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T3 889-893 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-84 Sentence denotes Risk Factors for testing positive for SARS-CoV-2 in a national US healthcare system.
T2 85-96 Sentence denotes BACKGROUND:
T3 97-214 Sentence denotes Identifying risk factors for SARS-CoV-2 infection could help health systems improve testing and screening strategies.
T4 215-226 Sentence denotes OBJECTIVES:
T5 227-353 Sentence denotes Identify demographic factors, comorbid conditions, and symptoms independently associated with testing positive for SARS-CoV-2.
T6 354-361 Sentence denotes DESIGN:
T7 362-398 Sentence denotes Observational cross-sectional study.
T8 399-407 Sentence denotes SETTING:
T9 408-439 Sentence denotes Veterans Health Administration.
T10 440-449 Sentence denotes PATIENTS:
T11 450-561 Sentence denotes Persons tested for SARS-CoV-2 nucleic acid by polymerase chain reaction (PCR) between March 1 and May 14, 2020.
T12 562-575 Sentence denotes MEASUREMENTS:
T13 576-718 Sentence denotes Associations between demographic characteristics, diagnosed comorbid conditions, and documented symptoms with testing positive for SARS-CoV-2.
T14 719-727 Sentence denotes RESULTS:
T15 728-798 Sentence denotes Of 88,747 persons tested, 10,131 (11.4%) were SARS-CoV-2 PCR positive.
T16 799-1244 Sentence denotes Positivity was associated with older age (≥80 vs. <50 years: aOR 2.16, 95% CI 1.97-2.37), male sex (aOR 1.45, 95% CI 1.34-1.57), regional SARS-CoV-2 burden (≥2,000 vs. <400 cases/million: aOR 5.43, 95% CI 4.97-5.93), urban residence (aOR 1.78, 95% CI 1.70-1.87), Black (aOR 2.15, 95% CI 2.05-2.26) or American Indian/Alaska Native/Pacific Islander (aOR 1.26, 95% CI 1.05-1.52) vs. White race, and Hispanic ethnicity (aOR 1.52, 95% CI 1.40-1.65).
T17 1245-1336 Sentence denotes Obesity and diabetes were the only two medical conditions associated with testing positive.
T18 1337-1427 Sentence denotes Documented fevers, chills, cough, and diarrhea were also associated with testing positive.
T19 1428-1633 Sentence denotes The population attributable fraction of positive tests was highest for regional SARS-CoV-2 burden (35.3%), followed by demographic variables (27.2%), symptoms (12.0%), obesity (10.5%), and diabetes (0.4%).
T20 1634-1646 Sentence denotes LIMITATIONS:
T21 1647-1774 Sentence denotes Lack of information on SARS-CoV-2 exposures or the indications for testing which may affect the likelihood of testing positive.
T22 1775-1786 Sentence denotes CONCLUSION:
T23 1787-1973 Sentence denotes The majority of positive SARS-CoV-2 tests were attributed to regional SARS-CoV-2 burden, demographic characteristics and obesity with a minor contribution of chronic comorbid conditions.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1245-1252 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T2 1356-1362 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T3 1364-1369 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 1375-1383 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T5 1596-1603 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513
T6 1908-1915 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513