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OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 2137-2140 http://identifiers.org/oryzabase.gene/695 denotes CH6
T2 2344-2350 http://identifiers.org/oryzabase.gene/11742 denotes OsAT10
T3 2352-2358 http://identifiers.org/oryzabase.gene/11758 denotes OsIRX9
T4 2364-2376 http://identifiers.org/oryzabase.gene/15608 denotes OsMYB58/63-L
T91611 2137-2140 http://identifiers.org/rapdb.locus/Os06g0726100 denotes CH6
T2395 2344-2350 http://identifiers.org/rapdb.locus/Os06g0594600 denotes OsAT10
T39372 2352-2358 http://identifiers.org/rapdb.locus/Os07g0694400 denotes OsIRX9
T60356 2364-2376 http://identifiers.org/rapdb.locus/Os02g0695200 denotes OsMYB58/63-L

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 517-522 hunflair:NA:Chemical denotes sugar
M_1 808-820 hunflair:NA:Species denotes Oryza sativa
M_2 557-561 hunflair:NA:Species denotes Rice
M_3 1880-1886 hunflair:NA:Species denotes indica
M_4 82-86 hunflair:NA:Species denotes rice
M_5 802-806 hunflair:NA:Species denotes rice
M_6 960-964 hunflair:NA:Species denotes rice
M_7 1093-1097 hunflair:NA:Species denotes rice
M_8 1157-1161 hunflair:NA:Species denotes rice
M_9 1406-1410 hunflair:NA:Species denotes rice
M_10 1473-1477 hunflair:NA:Species denotes rice
M_11 2684-2688 hunflair:NA:Species denotes rice
M_12 2881-2885 hunflair:NA:Species denotes rice
M_13 2344-2350 hunflair:NA:Gene denotes OsAT10
M_14 2364-2377 hunflair:NA:Gene denotes OsMYB58/63-L.
M_15 2352-2358 hunflair:NA:Gene denotes OsIRX9
M_16 257-263 hunflair:NA:Chemical denotes carbon

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 2137-2140 http://identifiers.org/oryzabase.gene/695 denotes CH6
T2 2344-2350 http://identifiers.org/oryzabase.gene/11742 denotes OsAT10
T3 2352-2358 http://identifiers.org/oryzabase.gene/11758 denotes OsIRX9
T4 2364-2376 http://identifiers.org/oryzabase.gene/15608 denotes OsMYB58/63-L
T88419 2137-2140 http://identifiers.org/ricegap/LOC_Os06g51050 denotes CH6
T94096 2344-2350 http://identifiers.org/ricegap/LOC_Os06g39390 denotes OsAT10
T21012 2352-2358 http://identifiers.org/ricegap/LOC_Os07g49370 denotes OsIRX9
T83183 2364-2376 http://identifiers.org/ricegap/LOC_Os02g46780 denotes OsMYB58/63-L
T56319 2137-2140 http://identifiers.org/rapdb.locus/Os06g0726100 denotes CH6
T82516 2344-2350 http://identifiers.org/rapdb.locus/Os06g0594600 denotes OsAT10
T8861 2352-2358 http://identifiers.org/rapdb.locus/Os07g0694400 denotes OsIRX9
T13817 2364-2376 http://identifiers.org/rapdb.locus/Os02g0695200 denotes OsMYB58/63-L
T68967 2137-2140 http://identifiers.org/uniprot/P24626 denotes CH6
T82885 2344-2350 http://identifiers.org/uniprot/Q69UE6 denotes OsAT10
T73226 2352-2358 http://identifiers.org/uniprot/Q6Z3Y6 denotes OsIRX9
T5428 2364-2376 http://identifiers.org/uniprot/P20024 denotes OsMYB58/63-L
M_0 517-522 hunflair:NA:Chemical denotes sugar
M_1 808-820 hunflair:NA:Species denotes Oryza sativa
M_2 557-561 hunflair:NA:Species denotes Rice
M_3 1880-1886 hunflair:NA:Species denotes indica
M_4 82-86 hunflair:NA:Species denotes rice
M_5 802-806 hunflair:NA:Species denotes rice
M_6 960-964 hunflair:NA:Species denotes rice
M_7 1093-1097 hunflair:NA:Species denotes rice
M_8 1157-1161 hunflair:NA:Species denotes rice
M_9 1406-1410 hunflair:NA:Species denotes rice
M_10 1473-1477 hunflair:NA:Species denotes rice
M_11 2684-2688 hunflair:NA:Species denotes rice
M_12 2881-2885 hunflair:NA:Species denotes rice
M_13 2344-2350 hunflair:NA:Gene denotes OsAT10
M_14 2364-2377 hunflair:NA:Gene denotes OsMYB58/63-L.
M_15 2352-2358 hunflair:NA:Gene denotes OsIRX9
M_16 257-263 hunflair:NA:Chemical denotes carbon

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-93 Sentence denotes Association mapping identifies quantitative trait loci (QTL) for digestibility in rice straw.
T2 94-105 Sentence denotes Background:
T3 106-308 Sentence denotes The conversion of lignocellulosic biomass from agricultural waste into biofuels and chemicals is considered a promising way to provide sustainable low carbon products without compromising food security.
T4 309-556 Sentence denotes However, the use of lignocellulosic biomass for biofuel and chemical production is limited by the cost-effectiveness of the production process due to its recalcitrance to enzymatic hydrolysis and fermentable sugar release (i.e., saccharification).
T5 557-689 Sentence denotes Rice straw is a particularly attractive feedstock because millions of tons are currently burned in the field each year for disposal.
T6 690-858 Sentence denotes The aim of this study was to explore the underlying natural genetic variation that impacts the recalcitrance of rice (Oryza sativa) straw to enzymatic saccharification.
T7 859-1021 Sentence denotes Ultimately, we wanted to investigate whether we could identify genetic markers that could be used in rice breeding to improve commercial cultivars for this trait.
T8 1022-1303 Sentence denotes Here, we describe the development and characterization of a Vietnamese rice genome-wide association panel, high-throughput analysis of rice straw saccharification and lignin content, and the results from preliminary genome-wide association studies (GWAS) of the combined data sets.
T9 1304-1417 Sentence denotes We identify both QTL and plausible candidate genes that may have an impact on the saccharification of rice straw.
T10 1418-1426 Sentence denotes Results:
T11 1427-1749 Sentence denotes We assembled a diversity panel comprising 151 rice genotypes (Indica and Japonica types) from commercial, historical elite cultivars, and traditional landraces grown in Vietnam. The diversity panel was genotyped using genotype by sequencing (GBS) methods yielding a total of 328,915 single nucleotide polymorphisms (SNPs).
T12 1750-1861 Sentence denotes We collected phenotypic data from stems of these 151 genotypes for biomass saccharification and lignin content.
T13 1862-2018 Sentence denotes Using GWAS on the indica genotypes over 2 years we identified ten significant QTL for saccharification (digestibility) and seven significant QTL for lignin.
T14 2019-2099 Sentence denotes One QTL on chromosome 11 occurred in both GWAS for digestibility and for lignin.
T15 2100-2203 Sentence denotes Seven QTL for digestibility, on CH2, CH6, CH7, CH8, and CH11, were observed in both years of the study.
T16 2204-2343 Sentence denotes The QTL regions for saccharification include three potential candidate genes that have been previously reported to influence digestibility:
T17 2344-2377 Sentence denotes OsAT10; OsIRX9; and OsMYB58/63-L.
T18 2378-2390 Sentence denotes Conclusions:
T19 2391-2695 Sentence denotes Despite the difficulties associated with multi-phasic analysis of complex traits in novel germplasm, a moderate resolution GWAS successfully identified genetic associations encompassing both known and/or novel genes involved in determining the saccharification potential and lignin content of rice straw.
T20 2696-2895 Sentence denotes Plausible candidates within QTL regions, in particular those with roles in cell wall biosynthesis, were identified but will require validation to confirm their value for application in rice breeding.