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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 566-568 http://identifiers.org/oryzabase.gene/8905 denotes re
T2 720-723 http://identifiers.org/oryzabase.gene/22325 denotes ssp
T3 882-887 http://identifiers.org/oryzabase.gene/11165 denotes small
T4 1262-1266 http://identifiers.org/oryzabase.gene/587 denotes NAL1
T5 1320-1332 http://identifiers.org/oryzabase.gene/760 denotes heading date
T6 1320-1332 http://identifiers.org/oryzabase.gene/6355 denotes heading date
T19452 882-887 http://identifiers.org/ricegap/LOC_Os02g34850 denotes small
T14222 1262-1266 http://identifiers.org/ricegap/LOC_Os04g52479 denotes NAL1
T66274 1320-1332 http://identifiers.org/ricegap/LOC_Os06g16370 denotes heading date
T31274 566-568 http://identifiers.org/rapdb.locus/Os04g0164900 denotes re
T1740 882-887 http://identifiers.org/rapdb.locus/Os02g0554000 denotes small
T85360 1262-1266 http://identifiers.org/rapdb.locus/Os04g0615000 denotes NAL1
T52221 1320-1332 http://identifiers.org/rapdb.locus/Os06g0275000 denotes heading date
T42570 1262-1266 http://identifiers.org/uniprot/B4XT64 denotes NAL1
M_0 707-723 hunflair:NA:Species denotes Oryza sativa ssp
M_1 1346-1351 hunflair:NA:Gene denotes HESO1
M_2 725-733 hunflair:NA:Species denotes japonica
M_3 72-76 hunflair:NA:Species denotes rice
M_4 1127-1131 hunflair:NA:Species denotes rice
M_5 1262-1266 hunflair:NA:Gene denotes NAL1

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 1262-1266 http://identifiers.org/oryzabase.gene/587 denotes NAL1
T65306 1262-1266 http://identifiers.org/rapdb.locus/Os04g0615000 denotes NAL1

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 707-723 hunflair:NA:Species denotes Oryza sativa ssp
M_1 1346-1351 hunflair:NA:Gene denotes HESO1
M_2 725-733 hunflair:NA:Species denotes japonica
M_3 72-76 hunflair:NA:Species denotes rice
M_4 1127-1131 hunflair:NA:Species denotes rice
M_5 1262-1266 hunflair:NA:Gene denotes NAL1

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Investigation of the genetic diversity of a core collection of japanese rice landraces (JRC) using whole-genome sequencing.
T2 124-309 Sentence denotes The Rice Core Collection of Japanese Landraces (JRC) consisting of 50 accessions was developed by the genebank at the National Agriculture and Food Research Organization (NARO) in 2008.
T3 310-480 Sentence denotes As a Japanese landrace core collection, the JRC has been used for many research projects, including screening for different phenotypes and allele mining for target genes.
T4 481-752 Sentence denotes To understand the genetic diversity of Japanese Landraces, we performed whole genome re-sequencing of these 50 accessions, and obtained a total of 2,145,095 SNPs and 317,832 insertion-deletions (indels) by mapping against the Oryza sativa ssp. japonica Nipponbare genome.
T5 753-894 Sentence denotes A JRC phylogenetic tree based on 1,394 representative SNPs showed that JRC accessions were divided into two major groups and one small group.
T6 895-1023 Sentence denotes We used the multiple genome browser, TASUKE+ to examine haplotypes of flowering genes and detected new mutations in these genes.
T7 1024-1218 Sentence denotes Finally, we performed GWAS for agronomical traits using the JRC and another core collection, the world rice core collection (WRC), comprising of 69 accessions also provided by the NARO genebank.
T8 1219-1422 Sentence denotes In leaf blade width a strong peak close to NAL1, a key gene for the regulation of leaf width, and in heading date, a peak near HESO1, involved in flowering regulation were observed in GWAS using the JRC.
T9 1423-1482 Sentence denotes They were also detected in GWAS using the combined JRC+WRC.
T10 1483-1560 Sentence denotes Thus, JRC and JRC+WRC are suitable populations for GWAS in particular traits.