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PubMed:33041111
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 924-930 | Body_part | denotes | plasma | http://purl.org/sig/ont/fma/fma62970 |
T2 | 1060-1063 | Body_part | denotes | V-2 | http://purl.org/sig/ont/fma/fma13443|http://purl.org/sig/ont/fma/fma68615 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T1 | 0-8 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T2 | 141-149 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T3 | 248-256 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T4 | 465-473 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T5 | 479-487 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T6 | 1052-1056 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 121-122 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T2 | 200-203 | http://purl.obolibrary.org/obo/PR_000001343 | denotes | aim |
T3 | 621-625 | http://purl.obolibrary.org/obo/CLO_0008416 | denotes | peer |
T4 | 621-625 | http://purl.obolibrary.org/obo/CLO_0050081 | denotes | peer |
T5 | 677-681 | http://purl.obolibrary.org/obo/CLO_0008416 | denotes | peer |
T6 | 677-681 | http://purl.obolibrary.org/obo/CLO_0050081 | denotes | peer |
T7 | 764-765 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T8 | 924-930 | http://purl.obolibrary.org/obo/UBERON_0001969 | denotes | plasma |
T9 | 965-966 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T10 | 1140-1141 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T11 | 1379-1380 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T1 | 550-568 | Chemical | denotes | hydroxychloroquine | http://purl.obolibrary.org/obo/CHEBI_5801 |
T2 | 575-584 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
T3 | 858-869 | Chemical | denotes | chloroquine | http://purl.obolibrary.org/obo/CHEBI_3638 |
T4 | 871-873 | Chemical | denotes | CQ | http://purl.obolibrary.org/obo/CHEBI_3638 |
T5 | 876-894 | Chemical | denotes | hydroxychloroquine | http://purl.obolibrary.org/obo/CHEBI_5801 |
T6 | 902-912 | Chemical | denotes | antivirals | http://purl.obolibrary.org/obo/CHEBI_22587 |
T7 | 1057-1059 | Chemical | denotes | Co | http://purl.obolibrary.org/obo/CHEBI_27638 |
T8 | 1097-1107 | Chemical | denotes | remdesivir | http://purl.obolibrary.org/obo/CHEBI_145994 |
T9 | 1179-1198 | Chemical | denotes | lopinavir-ritonavir | http://purl.obolibrary.org/obo/CHEBI_145924 |
T10 | 1179-1188 | Chemical | denotes | lopinavir | http://purl.obolibrary.org/obo/CHEBI_31781 |
T11 | 1189-1198 | Chemical | denotes | ritonavir | http://purl.obolibrary.org/obo/CHEBI_45409 |
T12 | 1200-1209 | Chemical | denotes | ribavirin | http://purl.obolibrary.org/obo/CHEBI_63580 |
T13 | 1214-1224 | Chemical | denotes | interferon | http://purl.obolibrary.org/obo/CHEBI_52999 |
T14 | 1225-1229 | Chemical | denotes | beta | http://purl.obolibrary.org/obo/CHEBI_10545 |
T15 | 1269-1282 | Chemical | denotes | dexamethasone | http://purl.obolibrary.org/obo/CHEBI_41879 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
1 | 0-10 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
18 | 141-149 | Disease | denotes | COVID-19 | MESH:C000657245 |
19 | 248-258 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
20 | 392-396 | Gene | denotes | JAMA | Gene:50848 |
21 | 465-473 | Disease | denotes | COVID-19 | MESH:C000657245 |
22 | 479-489 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
23 | 516-589 | Gene | denotes | OR (treatment)) OR (vaccine)) OR (hydroxychloroquine)) OR (antiviral)) OR | |
24 | 858-869 | Chemical | denotes | chloroquine | MESH:D002738 |
25 | 871-873 | Chemical | denotes | CQ | MESH:D002738 |
26 | 876-894 | Chemical | denotes | hydroxychloroquine | MESH:D006886 |
27 | 896-899 | Chemical | denotes | HCQ | MESH:D006886 |
28 | 1052-1063 | Species | denotes | SARS-Co-V-2 | Tax:2697049 |
29 | 1097-1107 | Chemical | denotes | remdesivir | MESH:C000606551 |
30 | 1179-1198 | Chemical | denotes | lopinavir-ritonavir | MESH:C558899 |
31 | 1200-1209 | Chemical | denotes | ribavirin | MESH:D012254 |
32 | 1269-1282 | Chemical | denotes | dexamethasone | MESH:D003907 |
33 | 1305-1314 | Disease | denotes | mortality | MESH:D003643 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-97 | Sentence | denotes | SARS-CoV-2 pharmacologic therapies and their safety/effectiveness according to level of evidence. |
T2 | 98-111 | Sentence | denotes | INTRODUCTION: |
T3 | 112-196 | Sentence | denotes | There is a pressing need for COVID-19 transmission control and effective treatments. |
T4 | 197-341 | Sentence | denotes | We aim to evaluate the safety and effectiveness of SARS-CoV-2 pharmacologic therapies as of August 2, 2020 according to study level of evidence. |
T5 | 342-350 | Sentence | denotes | METHODS: |
T6 | 351-428 | Sentence | denotes | PubMed, ScienceDirect, Cochrane Library, JAMA Network and PNAS were searched. |
T7 | 429-603 | Sentence | denotes | The following keywords were used: ((COVID-19) OR (SARS-CoV-2)) AND ((((((therapeutics) OR (treatment)) OR (vaccine)) OR (hydroxychloroquine)) OR (antiviral)) OR (prognosis)). |
T8 | 604-664 | Sentence | denotes | Results included peer-reviewed studies published in English. |
T9 | 665-673 | Sentence | denotes | RESULTS: |
T10 | 674-803 | Sentence | denotes | 15 peer-reviewed articles met study inclusion criteria, of which 14 were RCTs and one was a systematic review with meta-analysis. |
T11 | 804-975 | Sentence | denotes | The following pharmacologic therapies were evaluated: chloroquine (CQ), hydroxychloroquine (HCQ), antivirals therapies, plasma therapy, anti-inflammatories, and a vaccine. |
T12 | 976-987 | Sentence | denotes | CONCLUSION: |
T13 | 988-1262 | Sentence | denotes | According to level 1 evidence reviewed here, the most effective SARS-Co-V-2 pharmacologic treatments include remdesivir for mild to severe disease, and a triple regimen therapy consisting of lopinavir-ritonavir, ribavirin and interferon beta-1b for mild to moderate disease. |
T14 | 1263-1354 | Sentence | denotes | Also, dexamethasone significantly reduced mortality in those requiring respiratory support. |
T15 | 1355-1449 | Sentence | denotes | However, there is still a great need for detailed level 1 evidence on pharmacologic therapies. |