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LitCovid-PD-FMA-UBERON

Id	Subject	Object	Predicate	Lexical cue	fma_id
T1	364-391	Body_part	denotes	ribonucleoprotein complexes	http://purl.org/sig/ont/fma/fma84762
T2	1066-1070	Body_part	denotes	gene	http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T1	30-34	Disease	denotes	SARS	http://purl.obolibrary.org/obo/MONDO_0005091
T2	540-548	Disease	denotes	COVID-19	http://purl.obolibrary.org/obo/MONDO_0100096
T3	870-878	Disease	denotes	SARS-CoV	http://purl.obolibrary.org/obo/MONDO_0005091
T4	1241-1249	Disease	denotes	SARS-CoV	http://purl.obolibrary.org/obo/MONDO_0005091
T5	1575-1583	Disease	denotes	SARS-CoV	http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id	Subject	Object	Predicate	Lexical cue
T1	60-61	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T2	203-204	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T3	331-341	http://purl.obolibrary.org/obo/CLO_0001658	denotes	activation
T4	402-403	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T5	612-613	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T6	789-794	http://purl.obolibrary.org/obo/UBERON_0000473	denotes	tests
T7	1066-1070	http://purl.obolibrary.org/obo/OGG_0000000002	denotes	gene
T8	1105-1106	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T9	1121-1125	http://purl.obolibrary.org/obo/UBERON_0000473	denotes	test
T10	1141-1142	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T11	1270-1275	http://purl.obolibrary.org/obo/NCBITaxon_9606	denotes	human
T12	1378-1379	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T13	1461-1468	http://purl.obolibrary.org/obo/UBERON_0000473	denotes	testing
T14	1597-1604	http://purl.obolibrary.org/obo/UBERON_0000473	denotes	testing

LitCovid-PD-GO-BP

Id	Subject	Object	Predicate	Lexical cue
T1	239-252	http://purl.obolibrary.org/obo/GO_0003968	denotes	transcriptase
T2	239-252	http://purl.obolibrary.org/obo/GO_0003899	denotes	transcriptase
T3	322-341	http://purl.obolibrary.org/obo/GO_0032075	denotes	nuclease activation

LitCovid-PubTator

Id	Subject	Object	Predicate	Lexical cue	tao:has_database_id
1	30-48	Species	denotes	SARS coronavirus-2	Tax:2697049
11	540-548	Disease	denotes	COVID-19	MESH:C000657245
12	556-563	Species	denotes	patient	Tax:9606
13	573-580	Species	denotes	Patient	Tax:9606
14	722-729	Species	denotes	patient	Tax:9606
15	870-880	Species	denotes	SARS-CoV-2	Tax:2697049
16	1241-1251	Species	denotes	SARS-CoV-2	Tax:2697049
17	1270-1275	Species	denotes	human	Tax:9606
18	1276-1289	Species	denotes	coronaviruses	Tax:11118
19	1575-1585	Species	denotes	SARS-CoV-2	Tax:2697049

LitCovid-sentences

Id	Subject	Object	Predicate	Lexical cue
T1	0-136	Sentence	denotes	Rapid, sensitive and specific SARS coronavirus-2 detection: a multi-center comparison between standard qRT-PCR and CRISPR based DETECTR.
T2	137-490	Sentence	denotes	Recent advances in CRISPR-based diagnostics suggest that DETECTR, a combination of isothermal reverse transcriptase loop mediated amplification (RT-LAMP) and subsequent Cas12 bystander nuclease activation by amplicon targeting ribonucleoprotein complexes, could be a faster and cheaper alternative to qRT-PCR without sacrificing sensitivity/specificity.
T3	491-572	Sentence	denotes	Here we compare DETECTR with qRT-PCR to diagnose COVID-19 on 378 patient samples.
T4	573-795	Sentence	denotes	Patient sample dilution assays suggest a higher analytical sensitivity of DETECTR compared to qRT-PCR, however, this was not confirmed in this large patient cohort, were we report 95% reproducibility between the two tests.
T5	796-959	Sentence	denotes	These data showed that both techniques are equally sensitive in detecting SARS-CoV-2 providing additional value of DETECTR to the currently used qRT-PCR platforms.
T6	960-1071	Sentence	denotes	For DETECTR, different gRNAs can be used simultaneously to obviate negative results due to mutations in N-gene.
T7	1072-1197	Sentence	denotes	Lateral flow strips, suitable as a point of care test (POCT), showed a 100% correlation to the high-throughput DETECTR assay.
T8	1198-1290	Sentence	denotes	Importantly, DETECTR was 100% specific for SARS-CoV-2 relative to other human coronaviruses.
T9	1291-1605	Sentence	denotes	As there is no need for specialized equipment, DETECTR could be rapidly implemented as a complementary technically independent approach to qRT-PCR thereby increasing the testing capacity of medical microbiological laboratories and relieving the existent PCR-platforms for routine non-SARS-CoV-2 diagnostic testing.