PubMed:33004323
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 17-23 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T2 | 89-95 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T3 | 170-175 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T4 | 265-271 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T5 | 288-294 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T6 | 404-410 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T7 | 513-519 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T8 | 553-559 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T9 | 585-591 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 17-23 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T2 | 89-95 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T3 | 265-271 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T4 | 288-294 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T5 | 404-410 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T6 | 513-519 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T7 | 553-559 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T8 | 585-591 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 0-8 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T2 | 25-33 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T3 | 125-133 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T4 | 136-145 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T5 | 310-318 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T6 | 398-417 | Disease | denotes | acute kidney injury | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T7 | 411-417 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
| T8 | 419-422 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T9 | 427-435 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T10 | 479-487 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T11 | 505-527 | Disease | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/MONDO_0005300 |
| T12 | 513-527 | Disease | denotes | kidney disease | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
| T14 | 543-567 | Disease | denotes | end-stage kidney disease | http://purl.obolibrary.org/obo/MONDO_0004375 |
| T15 | 553-567 | Disease | denotes | kidney disease | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 17-23 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T2 | 17-23 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T3 | 17-23 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T4 | 58-59 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T5 | 89-95 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T6 | 89-95 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T7 | 89-95 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T8 | 157-162 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T9 | 170-175 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T10 | 265-271 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T11 | 265-271 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T12 | 265-271 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T13 | 288-294 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T14 | 288-294 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T15 | 288-294 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T16 | 404-410 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T17 | 404-410 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T18 | 404-410 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T19 | 513-519 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T20 | 513-519 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T21 | 513-519 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T22 | 553-559 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T23 | 553-559 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T24 | 553-559 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T25 | 585-591 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T26 | 585-591 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T27 | 585-591 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 188-199 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 382-394 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-24 | Sentence | denotes | COVID-19 and the kidney. |
| T2 | 25-272 | Sentence | denotes | COVID-19 is primarily considered a respiratory illness, but the kidney may be one of the targets of SARS-CoV-2 infection, since the virus enters cells through the angiotensin-converting enzyme 2 receptor, which is found in abundance in the kidney. |
| T3 | 273-354 | Sentence | denotes | Information on kidney involvement in COVID-19 is limited but is evolving rapidly. |
| T4 | 355-614 | Sentence | denotes | This article discusses the pathogenesis of acute kidney injury (AKI) in COVID-19, its optimal management, and the impact of COVID-19 on patients with chronic kidney disease, patients with end-stage kidney disease on dialysis, and kidney transplant recipients. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1 | 0-8 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 13 | 25-33 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 14 | 60-79 | Disease | denotes | respiratory illness | MESH:D012140 |
| 15 | 125-145 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 16 | 310-318 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 17 | 398-417 | Disease | denotes | acute kidney injury | MESH:D058186 |
| 18 | 427-435 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 19 | 479-487 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 20 | 491-499 | Species | denotes | patients | Tax:9606 |
| 21 | 505-527 | Disease | denotes | chronic kidney disease | MESH:D051436 |
| 22 | 529-537 | Species | denotes | patients | Tax:9606 |
| 23 | 543-567 | Disease | denotes | end-stage kidney disease | MESH:D007676 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 60-79 | Phenotype | denotes | respiratory illness | http://purl.obolibrary.org/obo/HP_0002086 |
| T2 | 398-417 | Phenotype | denotes | acute kidney injury | http://purl.obolibrary.org/obo/HP_0001919 |
| T3 | 419-422 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T4 | 505-527 | Phenotype | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/HP_0012622 |
| T5 | 553-567 | Phenotype | denotes | kidney disease | http://purl.obolibrary.org/obo/HP_0000112 |