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OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 196-212 http://identifiers.org/oryzabase.gene/24381 denotes pollen sterility
T2 401-417 http://identifiers.org/oryzabase.gene/24381 denotes pollen sterility
T3 456-472 http://identifiers.org/oryzabase.gene/24381 denotes pollen sterility
T4 822-838 http://identifiers.org/oryzabase.gene/24381 denotes pollen sterility

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 433-435 http://identifiers.org/oryzabase.gene/6040 denotes Sb
T2 433-435 http://identifiers.org/oryzabase.gene/333 denotes Sb
T3 433-435 http://identifiers.org/oryzabase.gene/2161 denotes Sb
T4 1662-1674 http://identifiers.org/rapdb.locus/Os01g0917500 denotes Os01g0917500
T5 1676-1680 http://identifiers.org/oryzabase.gene/2981 denotes MSP1
T6 1714-1726 http://identifiers.org/rapdb.locus/Os07g0624900 denotes Os07g0624900
T7 1731-1743 http://identifiers.org/rapdb.locus/Os04g0208600 denotes Os04g0208600
T8 1761-1763 http://identifiers.org/oryzabase.gene/2945 denotes GO
T82019 1662-1674 http://identifiers.org/rapdb.locus/Os01g0917500 denotes Os01g0917500
T51675 1676-1680 http://identifiers.org/rapdb.locus/Os01g0917500 denotes MSP1
T65303 1714-1726 http://identifiers.org/rapdb.locus/Os07g0624900 denotes Os07g0624900
T24547 1731-1743 http://identifiers.org/rapdb.locus/Os04g0208600 denotes Os04g0208600
T28491 1761-1763 http://identifiers.org/rapdb.locus/Os03g0790600 denotes GO

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1022-1047 hunflair:NA:Disease denotes chromosomal abnormalities
M_1 433-435 hunflair:NA:Chemical denotes Sb
M_2 1662-1674 hunflair:NA:Gene denotes Os01g0917500
M_3 171-174 hunflair:NA:Gene denotes San
M_4 569-572 hunflair:NA:Gene denotes San
M_5 2007-2018 hunflair:NA:Chemical denotes amino acids
M_6 1877-1887 hunflair:NA:Chemical denotes amino acid
M_7 87-91 hunflair:NA:Species denotes rice
M_8 253-257 hunflair:NA:Species denotes rice
M_9 309-313 hunflair:NA:Species denotes rice
M_10 491-495 hunflair:NA:Species denotes rice
M_11 600-604 hunflair:NA:Species denotes rice
M_12 696-700 hunflair:NA:Species denotes rice
M_13 857-861 hunflair:NA:Species denotes rice
M_14 1176-1180 hunflair:NA:Species denotes rice
M_15 1262-1266 hunflair:NA:Species denotes rice
M_16 2129-2133 hunflair:NA:Species denotes rice
M_17 2238-2242 hunflair:NA:Species denotes rice
M_18 234-251 hunflair:NA:Species denotes indica × japonica
M_19 179-182 hunflair:NA:Gene denotes Sbn
M_20 577-580 hunflair:NA:Gene denotes Sbn
M_21 1714-1726 hunflair:NA:Gene denotes Os07g0624900
M_22 1676-1680 hunflair:NA:Gene denotes MSP1
M_23 429-431 hunflair:NA:Gene denotes Sa

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 433-435 http://identifiers.org/oryzabase.gene/6040 denotes Sb
T2 433-435 http://identifiers.org/oryzabase.gene/333 denotes Sb
T3 433-435 http://identifiers.org/oryzabase.gene/2161 denotes Sb
T4 1662-1674 http://identifiers.org/rapdb.locus/Os01g0917500 denotes Os01g0917500
T5 1676-1680 http://identifiers.org/oryzabase.gene/2981 denotes MSP1
T6 1714-1726 http://identifiers.org/rapdb.locus/Os07g0624900 denotes Os07g0624900
T7 1731-1743 http://identifiers.org/rapdb.locus/Os04g0208600 denotes Os04g0208600
T8 1761-1763 http://identifiers.org/oryzabase.gene/2945 denotes GO
T11125 1676-1680 http://identifiers.org/ricegap/LOC_Os01g68870 denotes MSP1
T30330 1761-1763 http://identifiers.org/ricegap/LOC_Os03g57670 denotes GO
T41399 1761-1763 http://identifiers.org/ricegap/LOC_Os03g57660 denotes GO
T90762 1676-1680 http://identifiers.org/rapdb.locus/Os01g0917500 denotes MSP1
T71739 1761-1763 http://identifiers.org/rapdb.locus/Os03g0790600 denotes GO
T78197 1676-1680 http://identifiers.org/uniprot/Q8RZV7 denotes MSP1
T19176 1761-1763 http://identifiers.org/uniprot/Q852M4 denotes GO
T45070 1761-1763 http://identifiers.org/refseq/NP_001120724.1 denotes GO
M_0 1022-1047 hunflair:NA:Disease denotes chromosomal abnormalities
M_1 433-435 hunflair:NA:Chemical denotes Sb
M_2 1662-1674 hunflair:NA:Gene denotes Os01g0917500
M_3 171-174 hunflair:NA:Gene denotes San
M_4 569-572 hunflair:NA:Gene denotes San
M_5 2007-2018 hunflair:NA:Chemical denotes amino acids
M_6 1877-1887 hunflair:NA:Chemical denotes amino acid
M_7 87-91 hunflair:NA:Species denotes rice
M_8 253-257 hunflair:NA:Species denotes rice
M_9 309-313 hunflair:NA:Species denotes rice
M_10 491-495 hunflair:NA:Species denotes rice
M_11 600-604 hunflair:NA:Species denotes rice
M_12 696-700 hunflair:NA:Species denotes rice
M_13 857-861 hunflair:NA:Species denotes rice
M_14 1176-1180 hunflair:NA:Species denotes rice
M_15 1262-1266 hunflair:NA:Species denotes rice
M_16 2129-2133 hunflair:NA:Species denotes rice
M_17 2238-2242 hunflair:NA:Species denotes rice
M_18 234-251 hunflair:NA:Species denotes indica × japonica
M_19 179-182 hunflair:NA:Gene denotes Sbn
M_20 577-580 hunflair:NA:Gene denotes Sbn
M_21 1714-1726 hunflair:NA:Gene denotes Os07g0624900
M_22 1676-1680 hunflair:NA:Gene denotes MSP1
M_23 429-431 hunflair:NA:Gene denotes Sa

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-131 Sentence denotes Comparative study on cytogenetics and transcriptome between diploid and autotetraploid rice hybrids harboring double neutral genes.
T2 132-320 Sentence denotes Double pollen fertility neutral genes, San and Sbn, can control pollen sterility in intersubspecific (indica × japonica) rice hybrids, which has excellent potential to increase rice yield.
T3 321-613 Sentence denotes Previous studies showed that polyploidy could increase the interaction of three pollen sterility loci, i.e. Sa, Sb and Sc, which cause pollen sterility in autotetraploid rice hybrids, and hybrid fertility could be improved by double neutral genes, San and Sbn, in autotetraploid rice hybrids.
T4 614-907 Sentence denotes We compared cytological and transcriptome data between autotetraploid and diploid rice hybrid during meiosis and single microspore stages to understand the molecular mechanism of neutral genes for overcoming pollen sterility in autotetraploid rice hybrids, which harbored double neutral genes.
T5 908-1150 Sentence denotes Cytological results revealed that the double neutral genes resulted in higher pollen fertility (76.74%) and lower chromosomal abnormalities in autotetraploid hybrid than in parents during metaphase I, metaphase II, anaphase I and anaphase II.
T6 1151-1239 Sentence denotes Moreover, autotetraploid rice hybrid displayed stronger heterosis than a diploid hybrid.
T7 1240-1438 Sentence denotes Compared with diploid rice hybrid, a total of 904 and 68 differently expressed genes (DEGs) were identified explicitly in autotetraploid hybrid at meiosis and single microspore stages, respectively.
T8 1439-1745 Sentence denotes Of these, 133 and 41 genes were detected in higher-parent dominance and transgressive up-regulation dominance, respectively, which were considered autotetraploid potential heterosis genes, including a meiosis-related gene (Os01g0917500, MSP1) and two meiosis specific-genes (Os07g0624900 and Os04g0208600).
T9 1746-1929 Sentence denotes Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genomes pathway (KEGG) analysis revealed that DEGs significantly enriched in amino acid metabolism and photosynthesis metabolism.
T10 1930-2141 Sentence denotes These results indicated that meiosis-specific and meiosis-related genes, and amino acids and photosynthesis metabolism-related genes contribute to higher yield and pollen fertility in autotetraploid rice hybrid.
T11 2142-2295 Sentence denotes This study provides a theoretical basis for molecular mechanisms of heterosis in autotetraploid rice harboring double neutral genes for pollen fertility.