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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 79-103 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T2 105-113 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 189-213 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 215-223 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 236-258 Disease denotes respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T6 437-484 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T7 437-470 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T8 486-494 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 722-730 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 740-749 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T11 1099-1107 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 1159-1167 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 1232-1253 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T14 1244-1253 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 1288-1296 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 1322-1331 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T17 1400-1408 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 1614-1622 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 1659-1668 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T20 1859-1867 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 116-126 http://purl.obolibrary.org/obo/BFO_0000030 denotes Objectives
T2 293-294 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 331-334 http://purl.obolibrary.org/obo/CLO_0001562 denotes a 2
T4 331-334 http://purl.obolibrary.org/obo/CLO_0001563 denotes a 2
T5 425-432 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T6 534-545 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing was
T7 700-704 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T8 750-751 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T9 752-753 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T10 877-881 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T11 982-989 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T12 1088-1094 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T13 1109-1110 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T14 1139-1145 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T15 1203-1210 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T16 1302-1308 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T17 1332-1333 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T18 1380-1386 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T19 1444-1450 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T20 1517-1521 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T21 1593-1600 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T22 1639-1645 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T23 1669-1670 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 674-679 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T2 786-798 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T3 794-798 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T4 1494-1506 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T5 1502-1506 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 236-258 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T2 1232-1253 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3 57-65 Species denotes patients Tax:9606
4 79-103 Disease denotes coronavirus disease 2019 MESH:C000657245
5 105-113 Disease denotes COVID-19 MESH:C000657245
33 189-213 Disease denotes coronavirus disease 2019 MESH:C000657245
34 215-223 Disease denotes COVID-19 MESH:C000657245
35 236-258 Disease denotes respiratory infections MESH:D012141
36 437-484 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
37 486-496 Species denotes SARS-CoV-2 Tax:2697049
38 572-580 Species denotes patients Tax:9606
39 722-732 Species denotes SARS-CoV-2 Tax:2697049
40 734-753 Gene denotes rapid influenza A/B
41 810-817 Species denotes Patient Tax:9606
42 1034-1042 Species denotes patients Tax:9606
43 1070-1078 Species denotes patients Tax:9606
44 1099-1107 Species denotes SARS-CoV Tax:694009
45 1130-1138 Species denotes patients Tax:9606
46 1159-1167 Disease denotes COVID-19 MESH:C000657245
47 1189-1197 Species denotes patients Tax:9606
48 1232-1253 Disease denotes respiratory infection MESH:D012141
49 1266-1274 Species denotes patients Tax:9606
50 1288-1296 Disease denotes COVID-19 MESH:C000657245
51 1349-1357 Species denotes patients Tax:9606
52 1400-1408 Disease denotes COVID-19 MESH:C000657245
53 1431-1439 Species denotes patients Tax:9606
54 1584-1592 Species denotes patients Tax:9606
55 1614-1622 Disease denotes COVID-19 MESH:C000657245
56 1626-1633 Species denotes patient Tax:9606
57 1762-1769 Species denotes patient Tax:9606
58 1845-1853 Species denotes patients Tax:9606
59 1859-1867 Disease denotes COVID-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-115 Sentence denotes Rates of coinfection with other respiratory pathogens in patients positive for coronavirus disease 2019 (COVID-19).
T2 116-127 Sentence denotes Objectives:
T3 128-275 Sentence denotes The purpose of this study was to assess coinfection rates of coronavirus disease 2019 (COVID-19) with other respiratory infections on presentation.
T4 276-284 Sentence denotes Methods:
T5 285-533 Sentence denotes This is a retrospective analysis of data from a 2 hospital academic medical centers and 2 urgent care centers during the initial 2 weeks of testing for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) , March 10, 2020 to March 23, 2020.
T6 534-648 Sentence denotes Testing was targeted toward high-risk patients following US Centers for Disease Control and Prevention guidelines.
T7 649-688 Sentence denotes Demographics include age group and sex.
T8 689-809 Sentence denotes Laboratory test results included SARS-CoV-2, rapid influenza A/B, and upper respiratory pathogen nucleic acid detection.
T9 810-918 Sentence denotes Patient demographics and coinfections are presented overall and by test results with descriptive statistics.
T10 919-927 Sentence denotes Results:
T11 928-1108 Sentence denotes Complete laboratory results from the first 2 weeks of testing were available for 471 emergency department patients and 117 urgent care center patients who were tested for SARS-CoV.
T12 1109-1254 Sentence denotes A total of 51 (8.7%) patients tested positive for COVID-19 with only 1 of these patients also testing positive for another respiratory infection.
T13 1255-1334 Sentence denotes One of the patients positive for COVID-19 also tested positive for influenza A.
T14 1335-1522 Sentence denotes Among the 537 patients who were screened and tested negative for COVID-19, there were 33 (6.1%) patients who tested positive in the upper respiratory pathogen nucleic acid detection test.
T15 1523-1534 Sentence denotes Conclusion:
T16 1535-1671 Sentence denotes In our study investigating coinfections among 51 patients testing positive for COVID-19, 1 patient also tested positive for influenza A.
T17 1672-1868 Sentence denotes Although we found limited coinfections in our emergency department and urgent care center patient populations, further research is needed to assess potential coinfection in patients with COVID-19.