PubMed:32825963
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 349-359 | Body_part | denotes | human body | http://purl.org/sig/ont/fma/fma305853 |
| T2 | 393-400 | Body_part | denotes | tissues | http://purl.org/sig/ont/fma/fma9637 |
| T3 | 830-834 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T4 | 836-858 | Body_part | denotes | gastrointestinal tract | http://purl.org/sig/ont/fma/fma71132 |
| T5 | 860-865 | Body_part | denotes | liver | http://purl.org/sig/ont/fma/fma7197 |
| T6 | 867-873 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T7 | 875-879 | Body_part | denotes | skin | http://purl.org/sig/ont/fma/fma7163 |
| T8 | 881-886 | Body_part | denotes | heart | http://purl.org/sig/ont/fma/fma7088 |
| T9 | 888-893 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T10 | 895-901 | Body_part | denotes | spleen | http://purl.org/sig/ont/fma/fma7196 |
| T11 | 903-914 | Body_part | denotes | lymph nodes | http://purl.org/sig/ont/fma/fma5034 |
| T12 | 903-908 | Body_part | denotes | lymph | http://purl.org/sig/ont/fma/fma9671 |
| T13 | 916-921 | Body_part | denotes | brain | http://purl.org/sig/ont/fma/fma50801 |
| T14 | 923-936 | Body_part | denotes | blood vessels | http://purl.org/sig/ont/fma/fma63183 |
| T15 | 923-928 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T16 | 942-950 | Body_part | denotes | placenta | http://purl.org/sig/ont/fma/fma63934 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 411-417 | Body_part | denotes | organs | http://purl.obolibrary.org/obo/UBERON_0000062 |
| T2 | 582-588 | Body_part | denotes | organs | http://purl.obolibrary.org/obo/UBERON_0000062 |
| T3 | 813-819 | Body_part | denotes | organs | http://purl.obolibrary.org/obo/UBERON_0000062 |
| T4 | 830-834 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T5 | 860-865 | Body_part | denotes | liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T6 | 867-873 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T7 | 875-879 | Body_part | denotes | skin | http://purl.obolibrary.org/obo/UBERON_0000014 |
| T8 | 881-886 | Body_part | denotes | heart | http://purl.obolibrary.org/obo/UBERON_0000948 |
| T9 | 888-893 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T10 | 895-901 | Body_part | denotes | spleen | http://purl.obolibrary.org/obo/UBERON_0002106 |
| T11 | 903-914 | Body_part | denotes | lymph nodes | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T12 | 903-908 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T13 | 916-936 | Body_part | denotes | brain, blood vessels | http://purl.obolibrary.org/obo/UBERON_0003499 |
| T14 | 916-921 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955 |
| T15 | 923-928 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T16 | 929-936 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
| T17 | 942-950 | Body_part | denotes | placenta | http://purl.obolibrary.org/obo/UBERON_0001987 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 23-31 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T2 | 61-85 | Disease | denotes | coronavirus disease 2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T3 | 87-95 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T4 | 108-155 | Disease | denotes | Severe Acute Respiratory Syndrome Coronavirus-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T5 | 157-165 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T6 | 335-343 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T7 | 533-541 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T8 | 757-765 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T9 | 963-971 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T10 | 1046-1050 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T11 | 1060-1069 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T12 | 1180-1184 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 33-34 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T2 | 236-237 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T3 | 349-354 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T4 | 411-417 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organs |
| T5 | 487-488 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T6 | 582-588 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organs |
| T7 | 631-632 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T8 | 813-819 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organs |
| T9 | 830-834 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T10 | 830-834 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T11 | 836-858 | http://purl.obolibrary.org/obo/UBERON_0005409 | denotes | gastrointestinal tract |
| T12 | 860-865 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
| T13 | 860-865 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | liver |
| T14 | 867-873 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T15 | 867-873 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T16 | 867-873 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T17 | 875-879 | http://purl.obolibrary.org/obo/UBERON_0000014 | denotes | skin |
| T18 | 875-879 | http://purl.obolibrary.org/obo/UBERON_0001003 | denotes | skin |
| T19 | 875-879 | http://purl.obolibrary.org/obo/UBERON_0002097 | denotes | skin |
| T20 | 875-879 | http://purl.obolibrary.org/obo/UBERON_0002199 | denotes | skin |
| T21 | 875-879 | http://www.ebi.ac.uk/efo/EFO_0000962 | denotes | skin |
| T22 | 881-886 | http://purl.obolibrary.org/obo/UBERON_0000948 | denotes | heart |
| T23 | 881-886 | http://purl.obolibrary.org/obo/UBERON_0007100 | denotes | heart |
| T24 | 881-886 | http://purl.obolibrary.org/obo/UBERON_0015228 | denotes | heart |
| T25 | 881-886 | http://www.ebi.ac.uk/efo/EFO_0000815 | denotes | heart |
| T26 | 888-893 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T27 | 888-893 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T28 | 895-901 | http://purl.obolibrary.org/obo/UBERON_0002106 | denotes | spleen |
| T29 | 903-914 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph nodes |
| T30 | 916-921 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
| T31 | 916-921 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | brain |
| T32 | 923-936 | http://purl.obolibrary.org/obo/UBERON_0001981 | denotes | blood vessels |
| T33 | 923-936 | http://www.ebi.ac.uk/efo/EFO_0000817 | denotes | blood vessels |
| T34 | 942-950 | http://purl.obolibrary.org/obo/UBERON_0001987 | denotes | placenta |
| T35 | 942-950 | http://www.ebi.ac.uk/efo/EFO_0001407 | denotes | placenta |
| T36 | 1101-1102 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 251-262 | Chemical | denotes | Angiotensin | http://purl.obolibrary.org/obo/CHEBI_2719 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 702-714 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1 | 23-31 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 19 | 55-80 | Disease | denotes | novel coronavirus disease | MESH:C000657245 |
| 20 | 87-95 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 21 | 108-155 | Species | denotes | Severe Acute Respiratory Syndrome Coronavirus-2 | Tax:2697049 |
| 22 | 157-167 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 23 | 251-282 | Gene | denotes | Angiotensin-Converting Enzyme 2 | Gene:59272 |
| 24 | 284-288 | Gene | denotes | ACE2 | Gene:59272 |
| 25 | 335-345 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 26 | 349-354 | Species | denotes | human | Tax:9606 |
| 27 | 533-541 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 28 | 748-753 | Disease | denotes | death | MESH:D003643 |
| 29 | 757-765 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 30 | 963-971 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 31 | 1046-1050 | Disease | denotes | SARS | MESH:D045169 |
| 32 | 1055-1059 | Disease | denotes | MERS | MESH:D018352 |
| 33 | 1060-1069 | Disease | denotes | infection | MESH:D007239 |
| 34 | 1180-1184 | Disease | denotes | SARS | MESH:D045169 |
| 35 | 1189-1193 | Disease | denotes | MERS | MESH:D018352 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-32 | Sentence | denotes | Pathologic features of COVID-19: |
| T2 | 33-50 | Sentence | denotes | A concise review. |
| T3 | 51-247 | Sentence | denotes | The novel coronavirus disease 2019 (COVID-19), caused by Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2), first appeared in December 2019, in Wuhan, China and evolved into a pandemic. |
| T4 | 248-440 | Sentence | denotes | As Angiotensin-Converting Enzyme 2 (ACE2) is one of the potential target receptors for SARS-CoV-2 in human body, which is expressed in different tissues, multiple organs might become affected. |
| T5 | 441-589 | Sentence | denotes | In the initial phase of the current pandemic, a handful of post-mortem case-series revealed COVID-19-related pathological changes in various organs. |
| T6 | 590-772 | Sentence | denotes | Although pathological examination is not a feasible method of diagnosis, it can elucidate pathological changes, pathogenesis of the disease, and the cause of death in COVID-19 cases. |
| T7 | 773-1005 | Sentence | denotes | Herein, we thoroughly reviewed multiple organs including lung, gastrointestinal tract, liver, kidney, skin, heart, blood, spleen, lymph nodes, brain, blood vessels, and placenta in terms of COVID-19-related pathological alterations. |
| T8 | 1006-1091 | Sentence | denotes | Also, these findings were compared with SARS and MERS infection, wherever applicable. |
| T9 | 1092-1194 | Sentence | denotes | We found a diverse range of pathological changes, some of which resemble those found in SARS and MERS. |
LitCovid_AGAC_only
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| p107991s11 | 98-107 | Reg | denotes | caused by |