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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 79-95 Body_part denotes pulmonary artery http://purl.org/sig/ont/fma/fma66326
T2 534-542 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T3 847-856 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194
T4 930-948 Body_part denotes pulmonary arteries http://purl.org/sig/ont/fma/fma66326
T5 940-948 Body_part denotes arteries http://purl.org/sig/ont/fma/fma63812
T6 1019-1037 Body_part denotes pulmonary arteries http://purl.org/sig/ont/fma/fma66326
T7 1029-1037 Body_part denotes arteries http://purl.org/sig/ont/fma/fma63812
T8 1154-1165 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T9 1270-1278 Body_part denotes arteries http://purl.org/sig/ont/fma/fma63812
T10 1495-1510 Body_part denotes coronary artery http://purl.org/sig/ont/fma/fma49893
T11 1713-1718 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T12 1901-1906 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 79-95 Body_part denotes pulmonary artery http://purl.obolibrary.org/obo/UBERON_0002012
T2 89-95 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T3 847-856 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982
T4 930-948 Body_part denotes pulmonary arteries http://purl.obolibrary.org/obo/UBERON_0002012
T5 963-969 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T6 1019-1037 Body_part denotes pulmonary arteries http://purl.obolibrary.org/obo/UBERON_0002012
T7 1075-1081 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T8 1154-1165 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T9 1495-1510 Body_part denotes coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T10 1504-1510 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T11 1713-1718 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 40-48 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 126-142 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T3 184-208 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 210-218 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 230-238 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 429-437 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 496-504 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 602-618 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T9 779-798 Disease denotes vascular occlusions http://purl.obolibrary.org/obo/MONDO_0020672
T10 1139-1149 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T11 1327-1347 Disease denotes pulmonary infarction http://purl.obolibrary.org/obo/MONDO_0004597
T12 1414-1429 Disease denotes cardiac disease http://purl.obolibrary.org/obo/MONDO_0005267
T13 1511-1526 Disease denotes atherosclerosis http://purl.obolibrary.org/obo/MONDO_0005311
T14 1586-1613 Disease denotes Acute myocardial infarction http://purl.obolibrary.org/obo/MONDO_0004781
T15 1592-1613 Disease denotes myocardial infarction http://purl.obolibrary.org/obo/MONDO_0005068
T16 1792-1803 Disease denotes amyloidosis http://purl.obolibrary.org/obo/MONDO_0019065
T17 1839-1847 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 1853-1869 Disease denotes systemic disease http://purl.obolibrary.org/obo/MONDO_0015938
T19 1997-2003 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T20 2058-2074 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T21 2117-2125 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 79-95 http://purl.obolibrary.org/obo/UBERON_0002012 denotes pulmonary artery
T2 79-95 http://www.ebi.ac.uk/efo/EFO_0001399 denotes pulmonary artery
T3 241-244 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 277-278 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 351-354 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T6 634-636 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T7 719-720 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T8 871-873 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T9 899-908 http://purl.obolibrary.org/obo/OBI_0000245 denotes organized
T10 930-948 http://purl.obolibrary.org/obo/UBERON_0002012 denotes pulmonary arteries
T11 930-948 http://www.ebi.ac.uk/efo/EFO_0001399 denotes pulmonary arteries
T12 963-969 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T13 988-997 http://purl.obolibrary.org/obo/OBI_0000245 denotes organized
T14 1019-1037 http://purl.obolibrary.org/obo/UBERON_0002012 denotes pulmonary arteries
T15 1019-1037 http://www.ebi.ac.uk/efo/EFO_0001399 denotes pulmonary arteries
T16 1075-1081 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T17 1154-1158 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T18 1174-1178 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1/14
T19 1226-1230 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1/14
T20 1270-1278 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arteries
T21 1270-1278 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arteries
T22 1504-1510 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T23 1504-1510 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T24 1713-1718 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T25 1713-1718 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T26 1713-1718 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T27 1713-1718 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T28 1851-1852 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1901-1906 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T30 2078-2079 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3 40-48 Disease denotes COVID-19 MESH:C000657245
4 79-103 Disease denotes pulmonary artery thrombi MESH:D000071079
5 126-142 Disease denotes bronchopneumonia MESH:D001996
50 184-208 Disease denotes coronavirus disease 2019 MESH:C000657245
51 210-218 Disease denotes COVID-19 MESH:C000657245
52 230-240 Species denotes SARS-CoV-2 Tax:2697049
53 429-437 Disease denotes COVID-19 MESH:C000657245
54 496-504 Disease denotes COVID-19 MESH:C000657245
55 573-581 Species denotes patients Tax:9606
56 602-618 Disease denotes bronchopneumonia MESH:D001996
57 651-659 Species denotes patients Tax:9606
58 698-703 Disease denotes death MESH:D003643
59 709-717 Species denotes patients Tax:9606
60 753-798 Disease denotes thrombotic/thromboembolic vascular occlusions MESH:D013927
61 825-842 Disease denotes pulmonary thrombi MESH:D008171
62 847-869 Disease denotes capillary microthrombi MESH:C562760
63 930-948 Disease denotes pulmonary arteries MESH:D000071079
64 963-979 Disease denotes vessel occlusion
65 1019-1037 Disease denotes pulmonary arteries MESH:D000071079
66 1113-1126 Disease denotes thromboemboli MESH:D013923
67 1139-1149 Disease denotes thrombosis MESH:D013927
68 1154-1172 Disease denotes bone marrow emboli MESH:D001855
69 1194-1224 Disease denotes septic pulmonary thromboemboli MESH:D001170
70 1239-1256 Disease denotes Pulmonary thrombi MESH:D008171
71 1309-1317 Species denotes patients Tax:9606
72 1327-1347 Disease denotes pulmonary infarction MESH:D054060
73 1355-1375 Disease denotes pulmonary hemorrhage MESH:D006470
74 1381-1389 Species denotes patients Tax:9606
75 1414-1429 Disease denotes cardiac disease MESH:D006331
76 1441-1463 Disease denotes myocardial hypertrophy MESH:D006332
77 1495-1526 Disease denotes coronary artery atherosclerosis MESH:D003324
78 1545-1570 Disease denotes focal myocardial fibrosis MESH:D005355
79 1592-1613 Disease denotes myocardial infarction MESH:D009203
80 1647-1652 Disease denotes death MESH:D003643
81 1666-1674 Species denotes patients Tax:9606
82 1692-1711 Disease denotes cardiac hypertrophy MESH:D006332
83 1757-1764 Species denotes patient Tax:9606
84 1770-1774 Gene denotes ATTR Gene:7276
85 1792-1803 Disease denotes amyloidosis MESH:D000686
86 1839-1847 Disease denotes COVID-19 MESH:C000657245
87 1853-1869 Disease denotes systemic disease MESH:D034721
88 1986-2003 Disease denotes myocardial injury MESH:D009202
89 2008-2033 Disease denotes thrombotic/thromboembolic MESH:D013927
90 2058-2074 Disease denotes bronchopneumonia MESH:D001996
91 2103-2111 Species denotes patients Tax:9606
92 2117-2125 Disease denotes COVID-19 MESH:C000657245
93 2156-2161 Disease denotes death MESH:D003643

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 526-549 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T2 551-554 Phenotype denotes DAD http://purl.obolibrary.org/obo/HP_0033006
T3 764-778 Phenotype denotes thromboembolic http://purl.obolibrary.org/obo/HP_0001907
T4 1355-1375 Phenotype denotes pulmonary hemorrhage http://purl.obolibrary.org/obo/HP_0040223
T5 1495-1526 Phenotype denotes coronary artery atherosclerosis http://purl.obolibrary.org/obo/HP_0001677
T6 1551-1570 Phenotype denotes myocardial fibrosis http://purl.obolibrary.org/obo/HP_0001685
T7 1592-1613 Phenotype denotes myocardial infarction http://purl.obolibrary.org/obo/HP_0001658
T8 1784-1803 Phenotype denotes cardiac amyloidosis http://purl.obolibrary.org/obo/HP_0030843
T9 2019-2040 Phenotype denotes thromboembolic events http://purl.obolibrary.org/obo/HP_0001907

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-60 Sentence denotes Analysis of cardiopulmonary findings in COVID-19 fatalities:
T2 61-143 Sentence denotes High incidence of pulmonary artery thrombi and acute suppurative bronchopneumonia.
T3 144-346 Sentence denotes Since its recognition in December 2019, coronavirus disease 2019 (COVID-19) caused by SARS-CoV-2 has rapidly spread globally causing a pandemic that represents the greatest medical challenge in decades.
T4 347-515 Sentence denotes The aim of the study was to evaluate the spectrum of cardiopulmonary pathology of COVID-19 based on (non-minimal invasive) autopsies performed on 14 COVID-19 decedents.
T5 516-582 Sentence denotes Bilateral diffuse alveolar damage (DAD) was found in all patients.
T6 583-718 Sentence denotes Superimposed acute bronchopneumonia was present in 11 of 14 (78.6%) patients and was considered the major cause of death in 2 patients.
T7 719-799 Sentence denotes A key finding was the presence of thrombotic/thromboembolic vascular occlusions.
T8 800-843 Sentence denotes We classified 5 types of pulmonary thrombi:
T9 844-1238 Sentence denotes 1. capillary microthrombi (11/14, 78.6%); 2. partially organized thrombi in mid-sized pulmonary arteries with complete vessel occlusion; 3. non-organized thrombi in mid-sized pulmonary arteries that did not completely fill out the vessel lumen and probably represented thromboemboli rather than thrombosis; 4. bone marrow emboli (1/14, 7.1%); and 5. septic pulmonary thromboemboli (1/14, 7.1%).
T10 1239-1376 Sentence denotes Pulmonary thrombi in mid-sized arteries were noted in 5 of 14 (35.7%) patients, causing pulmonary infarction and/or pulmonary hemorrhage.
T11 1377-1585 Sentence denotes All patients had evidence of chronic cardiac disease, including myocardial hypertrophy (13/14, 92.9%), mild to marked coronary artery atherosclerosis (14/14, 100%) and focal myocardial fibrosis (3/14, 21.4%).
T12 1586-1804 Sentence denotes Acute myocardial infarction was found as concurrent cause of death in 3 (21.4%) patients, and significant cardiac hypertrophy (heart weight 750 g) was present in 1 (7.1%) patient with ATTR-positive cardiac amyloidosis.
T13 1805-2041 Sentence denotes The autopsy findings confirm that COVID-19 is a systemic disease, with major involvement of the lungs, that increases the risk of cardiac and vascular complications including acute myocardial injury and thrombotic/thromboembolic events.
T14 2042-2162 Sentence denotes Secondary acute bronchopneumonia is a common complication in patients with COVID-19 and may be the major cause of death.