> top > docs > PubMed:32661197 > annotations

PubMed:32661197 JSON TXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id	Subject	Object	Predicate	Lexical cue	fma_id
T1	855-860	Body_part	denotes	cells	http://purl.org/sig/ont/fma/fma68646
T2	891-895	Body_part	denotes	gene	http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T1	128-175	Disease	denotes	severe acute respiratory syndrome coronavirus 2	http://purl.obolibrary.org/obo/MONDO_0100096
T2	128-161	Disease	denotes	severe acute respiratory syndrome	http://purl.obolibrary.org/obo/MONDO_0005091
T3	177-185	Disease	denotes	SARS-CoV	http://purl.obolibrary.org/obo/MONDO_0005091
T4	203-211	Disease	denotes	COVID-19	http://purl.obolibrary.org/obo/MONDO_0100096
T5	295-328	Disease	denotes	severe acute respiratory syndrome	http://purl.obolibrary.org/obo/MONDO_0005091
T6	342-350	Disease	denotes	SARS-CoV	http://purl.obolibrary.org/obo/MONDO_0005091
T7	566-577	Disease	denotes	common cold	http://purl.obolibrary.org/obo/MONDO_0005709
T8	819-828	Disease	denotes	infection	http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id	Subject	Object	Predicate	Lexical cue
T1	45-50	http://purl.obolibrary.org/obo/NCBITaxon_9606	denotes	human
T2	75-80	http://purl.obolibrary.org/obo/CLO_0009985	denotes	focus
T3	236-241	http://purl.obolibrary.org/obo/NCBITaxon_9606	denotes	human
T4	510-511	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T5	512-517	http://purl.obolibrary.org/obo/NCBITaxon_10239	denotes	virus
T6	582-585	http://purl.obolibrary.org/obo/CLO_0051582	denotes	has
T7	715-716	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T8	855-860	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T9	891-895	http://purl.obolibrary.org/obo/OGG_0000000002	denotes	gene

LitCovid-PD-CHEBI

Id	Subject	Object	Predicate	Lexical cue	chebi_id
T1	1111-1120	Chemical	denotes	antiviral	http://purl.obolibrary.org/obo/CHEBI_22587

LitCovid-PD-GO-BP

Id	Subject	Object	Predicate	Lexical cue
T1	891-906	http://purl.obolibrary.org/obo/GO_0010467	denotes	gene expression
T2	1015-1029	http://purl.obolibrary.org/obo/GO_0042783	denotes	immune evasion
T3	1070-1086	http://purl.obolibrary.org/obo/GO_0019058	denotes	viral life cycle

LitCovid-sentences

Id	Subject	Object	Predicate	Lexical cue
T1	0-40	Sentence	denotes	The molecular virology of coronaviruses.
T2	41-212	Sentence	denotes	Few human pathogens have been the focus of as much concentrated worldwide attention as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the cause of COVID-19.
T3	213-578	Sentence	denotes	Its emergence into the human population and ensuing pandemic came on the heels of severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV), two other highly pathogenic coronavirus spillovers, which collectively have reshaped our view of a virus family previously associated primarily with the common cold.
T4	579-763	Sentence	denotes	It has placed intense pressure on the collective scientific community to develop therapeutics and vaccines, whose engineering relies on a detailed understanding of coronavirus biology.
T5	764-1041	Sentence	denotes	Here, we present the molecular virology of coronavirus infection, including its entry into cells, its remarkably sophisticated gene expression and replication mechanisms, its extensive remodeling of the intracellular environment, and its multifaceted immune evasion strategies.
T6	1042-1191	Sentence	denotes	We highlight aspects of the viral life cycle that may be amenable to antiviral targeting as well as key features of its biology that await discovery.

LitCovid-PubTator

Id	Subject	Object	Predicate	Lexical cue	tao:has_database_id
1	26-39	Species	denotes	coronaviruses	Tax:11118
14	45-50	Species	denotes	human	Tax:9606
15	128-175	Species	denotes	severe acute respiratory syndrome coronavirus 2	Tax:2697049
16	177-187	Species	denotes	SARS-CoV-2	Tax:2697049
17	203-211	Disease	denotes	COVID-19	MESH:C000657245
18	236-241	Species	denotes	human	Tax:9606
19	295-340	Species	denotes	severe acute respiratory syndrome coronavirus	Tax:694009
20	342-350	Species	denotes	SARS-CoV	Tax:694009
21	356-411	Species	denotes	Middle East respiratory syndrome coronavirus (MERS-CoV)	Tax:1335626
22	441-452	Species	denotes	coronavirus	Tax:11118
23	573-577	Disease	denotes	cold	MESH:D000067390
24	743-754	Species	denotes	coronavirus	Tax:11118
25	807-828	Disease	denotes	coronavirus infection	MESH:D018352

sentences

Id	Subject	Object	Predicate	Lexical cue
T1	0-40	Sentence	denotes	The molecular virology of coronaviruses.
T2	41-212	Sentence	denotes	Few human pathogens have been the focus of as much concentrated worldwide attention as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the cause of COVID-19.
T3	213-578	Sentence	denotes	Its emergence into the human population and ensuing pandemic came on the heels of severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV), two other highly pathogenic coronavirus spillovers, which collectively have reshaped our view of a virus family previously associated primarily with the common cold.
T4	579-763	Sentence	denotes	It has placed intense pressure on the collective scientific community to develop therapeutics and vaccines, whose engineering relies on a detailed understanding of coronavirus biology.
T5	764-1041	Sentence	denotes	Here, we present the molecular virology of coronavirus infection, including its entry into cells, its remarkably sophisticated gene expression and replication mechanisms, its extensive remodeling of the intracellular environment, and its multifaceted immune evasion strategies.
T6	1042-1191	Sentence	denotes	We highlight aspects of the viral life cycle that may be amenable to antiviral targeting as well as key features of its biology that await discovery.

mondo_disease

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T1	128-175	Disease	denotes	severe acute respiratory syndrome coronavirus 2	http://purl.obolibrary.org/obo/MONDO_0100096
T2	177-187	Disease	denotes	SARS-CoV-2	http://purl.obolibrary.org/obo/MONDO_0100096
T3	203-211	Disease	denotes	COVID-19	http://purl.obolibrary.org/obo/MONDO_0100096
T4	295-328	Disease	denotes	severe acute respiratory syndrome	http://purl.obolibrary.org/obo/MONDO_0005091
T5	342-350	Disease	denotes	SARS-CoV	http://purl.obolibrary.org/obo/MONDO_0005091
T6	566-577	Disease	denotes	common cold	http://purl.obolibrary.org/obo/MONDO_0005709
T7	819-828	Disease	denotes	infection	http://purl.obolibrary.org/obo/MONDO_0005550

NCBITAXON

Id	Subject	Object	Predicate	Lexical cue	db_id
T1	45-50	OrganismTaxon	denotes	human	9606
T2	128-161	OrganismTaxon	denotes	severe acute respiratory syndrome	694009
T3	177-185	OrganismTaxon	denotes	SARS-CoV	694009
T4	236-241	OrganismTaxon	denotes	human	9606
T5	295-328	OrganismTaxon	denotes	severe acute respiratory syndrome	694009
T6	342-350	OrganismTaxon	denotes	SARS-CoV	694009
T7	356-400	OrganismTaxon	denotes	Middle East respiratory syndrome coronavirus	1335626
T8	402-410	OrganismTaxon	denotes	MERS-CoV	1335626

Anatomy-UBERON

Id	Subject	Object	Predicate	Lexical cue	uberon_id
T1	967-980	Body_part	denotes	intracellular	http://purl.obolibrary.org/obo/GO_0005622