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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 111-119 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T2 709-714 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T3 787-797 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T4 920-928 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T5 1050-1054 Body_part denotes exon http://purl.org/sig/ont/fma/fma84120
T6 1094-1098 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T7 1131-1135 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 709-714 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 0-19 Disease denotes Recurrent pneumonia http://purl.obolibrary.org/obo/MONDO_0005936
T2 10-19 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 54-63 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T4 179-203 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T5 205-213 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 380-388 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 668-677 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 845-853 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 909-917 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 1136-1152 Disease denotes immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T11 1175-1183 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 1285-1295 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T13 1296-1316 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T15 1307-1316 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T16 1363-1371 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 1447-1455 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 1591-1599 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 23-24 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 132-133 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 284-296 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T4 389-393 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2, a
T5 601-602 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 611-612 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 709-714 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T8 773-777 http://purl.obolibrary.org/obo/PR_000001380 denotes IL2R
T9 836-840 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T10 999-1000 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1037-1042 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T12 1094-1098 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T13 1129-1135 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T14 1296-1306 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T15 1393-1394 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 1557-1558 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T17 1642-1649 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T18 1689-1690 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
0-19 Phenotype denotes Recurrent pneumonia http://purl.obolibrary.org/obo/HP_0006532|http://purl.obolibrary.org/obo/HP_0006532|http://purl.obolibrary.org/obo/HP_0002721|http://purl.obolibrary.org/obo/HP_0002090
658-677 Phenotype denotes pulmonary infection http://purl.obolibrary.org/obo/HP_0006532|http://purl.obolibrary.org/obo/HP_0006532|http://purl.obolibrary.org/obo/HP_0002721|http://purl.obolibrary.org/obo/HP_0002090
1136-1152 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0006532|http://purl.obolibrary.org/obo/HP_0006532|http://purl.obolibrary.org/obo/HP_0002721|http://purl.obolibrary.org/obo/HP_0002090
1307-1316 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0006532|http://purl.obolibrary.org/obo/HP_0006532|http://purl.obolibrary.org/obo/HP_0002721|http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 111-130 http://purl.obolibrary.org/obo/GO_0002377 denotes antibody production
T2 773-777 http://purl.obolibrary.org/obo/GO_0004911 denotes IL2R
T3 1006-1029 http://purl.obolibrary.org/obo/GO_0006959 denotes humoral immune response
T4 1014-1029 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-146 Sentence denotes Recurrent pneumonia in a patient with new coronavirus infection after discharge from hospital for insufficient antibody production: a case report.
T2 147-158 Sentence denotes BACKGROUND:
T3 159-297 Sentence denotes The rapid spread of coronavirus disease 2019 (COVID-19) was declared as an emerging public health threat by the World Health Organization.
T4 298-473 Sentence denotes As various measures have been taken successfully to combat the epidemic caused by SARS-CoV-2, a growing number of fully recovered patients have been discharged from hospitals.
T5 474-510 Sentence denotes However, some of them have relapsed.
T6 511-571 Sentence denotes Little is known about the causes that triggered the relapse.
T7 572-590 Sentence denotes CASE PRESENTATION:
T8 591-899 Sentence denotes We report a case of a 40 years old man who suffered from recurrent pulmonary infection with progression of lesions on chest computed tomography (CT), elevated levels of ferritin and IL2R, reduced lymphocyte count and positive oropharyngeal swab test for SARS-CoV-2 again after 5 days discharge from hospital.
T9 900-1043 Sentence denotes The anti-SARS-CoV-2 antibody level of this patient was very low at the time of relapse, suggesting a weak humoral immune response to the virus.
T10 1044-1153 Sentence denotes Total exon sequencing revealed mutations in TRNT1 gene, which may be responsible for B cell immunodeficiency.
T11 1154-1246 Sentence denotes Therefore, uncleared SARS-CoV-2 at his first discharge was likely to lead to his recurrence.
T12 1247-1350 Sentence denotes However, viral superinfection and non-infectious organizing pneumonia could not be completely excluded.
T13 1351-1469 Sentence denotes CONCLUSION: COVID-19 relapse may occur in a part of discharged patients with low titers of anti-SARS-CoV-2 antibodies.
T14 1470-1556 Sentence denotes These patients should be maintained in isolation for longer time even after discharge.
T15 1557-1740 Sentence denotes A more sensitive method to detect SARS-CoV-2 needs to be established and serological testing for specific antibodies may be used as a reference to determine the duration of isolation.