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PubMed:32513834 JSONTXT

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OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 915-917 http://identifiers.org/oryzabase.gene/46 denotes CG
T2 1116-1121 http://identifiers.org/oryzabase.gene/9976 denotes MYBS2
T3 1132-1137 http://identifiers.org/oryzabase.gene/15606 denotes MYB30
T4 1338-1343 http://identifiers.org/oryzabase.gene/3111 denotes ERF24
T94365 1116-1121 http://identifiers.org/rapdb.locus/Os10g0562100 denotes MYBS2
T55403 1132-1137 http://identifiers.org/rapdb.locus/Os02g0624300 denotes MYB30
T75394 1338-1343 http://identifiers.org/rapdb.locus/Os09g0522200 denotes ERF24

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1171-1181 hunflair:NA:Gene denotes β-Amylase5
M_1 609-618 hunflair:NA:Chemical denotes cytosines
M_2 1463-1473 hunflair:NA:Chemical denotes abscisic a
M_4 121-133 hunflair:NA:Species denotes Oryza sativa
M_5 239-241 hunflair:NA:Gene denotes MD
M_6 553-555 hunflair:NA:Gene denotes MD
M_7 1254-1256 hunflair:NA:Gene denotes MD
M_8 1497-1499 hunflair:NA:Gene denotes MD
M_9 1639-1641 hunflair:NA:Gene denotes MD
M_10 1416-1429 hunflair:NA:Chemical denotes abscisic acid
M_11 1338-1343 hunflair:NA:Gene denotes ERF24
M_12 115-119 hunflair:NA:Species denotes rice
M_13 1237-1241 hunflair:NA:Species denotes rice
M_14 1610-1614 hunflair:NA:Species denotes rice
M_15 1739-1743 hunflair:NA:Species denotes rice
M_16 56-62 hunflair:NA:Chemical denotes Carbon
M_17 252-258 hunflair:NA:Chemical denotes carbon
M_18 368-374 hunflair:NA:Chemical denotes carbon
M_19 1577-1583 hunflair:NA:Chemical denotes carbon
M_21 1132-1137 hunflair:NA:Gene denotes MYB30
M_22 1116-1121 hunflair:NA:Gene denotes MYBS2
M_23 1416-1445 hunflair:NA:Gene denotes abscisic acid 8'-hydroxylase1
M_25 1314-1329 hunflair:NA:Gene denotes transcription f

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 295-306 http://identifiers.org/oryzabase.gene/2034 denotes grain yield
T2 915-917 http://identifiers.org/oryzabase.gene/46 denotes CG
T3 1116-1121 http://identifiers.org/oryzabase.gene/9976 denotes MYBS2
T4 1132-1137 http://identifiers.org/oryzabase.gene/15606 denotes MYB30
T5 1338-1343 http://identifiers.org/oryzabase.gene/3111 denotes ERF24
T6 1416-1429 http://identifiers.org/oryzabase.gene/8408 denotes abscisic acid
T7 1463-1476 http://identifiers.org/oryzabase.gene/8408 denotes abscisic acid
T1794 295-306 http://identifiers.org/ricegap/LOC_Os08g07740 denotes grain yield
T31304 1116-1121 http://identifiers.org/ricegap/LOC_Os10g41260 denotes MYBS2
T65010 1132-1137 http://identifiers.org/ricegap/LOC_Os02g41510 denotes MYB30
T11222 1338-1343 http://identifiers.org/ricegap/LOC_Os09g35030 denotes ERF24
T92187 1416-1429 http://identifiers.org/ricegap/LOC_Os11g06720 denotes abscisic acid
T58920 1463-1476 http://identifiers.org/ricegap/LOC_Os11g06720 denotes abscisic acid
T93949 295-306 http://identifiers.org/rapdb.locus/Os08g0174500 denotes grain yield
T59975 1116-1121 http://identifiers.org/rapdb.locus/Os10g0562100 denotes MYBS2
T61066 1132-1137 http://identifiers.org/rapdb.locus/Os02g0624300 denotes MYB30
T86150 1338-1343 http://identifiers.org/rapdb.locus/Os09g0522200 denotes ERF24
T98489 1416-1429 http://identifiers.org/rapdb.locus/Os11g0167800 denotes abscisic acid
T44266 1463-1476 http://identifiers.org/rapdb.locus/Os11g0167800 denotes abscisic acid
T70226 1116-1121 http://identifiers.org/uniprot/Q8H1D1 denotes MYBS2
T96380 1116-1121 http://identifiers.org/uniprot/Q7XC51 denotes MYBS2
T13276 1132-1137 http://identifiers.org/uniprot/Q6K1S6 denotes MYB30
T87368 1338-1343 http://identifiers.org/uniprot/Q64MA1 denotes ERF24
T92016 1416-1429 http://identifiers.org/uniprot/Q53JF7 denotes abscisic acid
T92781 1463-1476 http://identifiers.org/uniprot/Q53JF7 denotes abscisic acid
M_0 1171-1181 hunflair:NA:Gene denotes β-Amylase5
M_1 609-618 hunflair:NA:Chemical denotes cytosines
M_2 1463-1473 hunflair:NA:Chemical denotes abscisic a
M_4 121-133 hunflair:NA:Species denotes Oryza sativa
M_5 239-241 hunflair:NA:Gene denotes MD
M_6 553-555 hunflair:NA:Gene denotes MD
M_7 1254-1256 hunflair:NA:Gene denotes MD
M_8 1497-1499 hunflair:NA:Gene denotes MD
M_9 1639-1641 hunflair:NA:Gene denotes MD
M_10 1416-1429 hunflair:NA:Chemical denotes abscisic acid
M_11 1338-1343 hunflair:NA:Gene denotes ERF24
M_12 115-119 hunflair:NA:Species denotes rice
M_13 1237-1241 hunflair:NA:Species denotes rice
M_14 1610-1614 hunflair:NA:Species denotes rice
M_15 1739-1743 hunflair:NA:Species denotes rice
M_16 56-62 hunflair:NA:Chemical denotes Carbon
M_17 252-258 hunflair:NA:Chemical denotes carbon
M_18 368-374 hunflair:NA:Chemical denotes carbon
M_19 1577-1583 hunflair:NA:Chemical denotes carbon
M_21 1132-1137 hunflair:NA:Gene denotes MYB30
M_22 1116-1121 hunflair:NA:Gene denotes MYBS2
M_23 1416-1445 hunflair:NA:Gene denotes abscisic acid 8'-hydroxylase1
M_25 1314-1329 hunflair:NA:Gene denotes transcription f

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-111 Sentence denotes Analysis of Global Methylome and Gene Expression during Carbon Reserve Mobilization in Stems under Soil Drying.
T2 112-307 Sentence denotes In rice (Oryza sativa), a specific temporary source organ, the stem, is important for grain filling, and moderate soil drying (MD) enhanced carbon reserve flow from stems to increase grain yield.
T3 308-431 Sentence denotes The dynamics and biological relevance of DNA methylation in carbon reserve remobilization during grain filling are unknown.
T4 432-525 Sentence denotes Here, we generated whole-genome single-base resolution maps of the DNA methylome in the stem.
T5 526-674 Sentence denotes During grain filling under MD, we observed an increase in DNA methylation of total cytosines, with more hypomethylated than hypermethylated regions.
T6 675-882 Sentence denotes Genes responsible for DNA methylation and demethylation were up-regulated, suggesting that DNA methylation changes in the stem were regulated by antagonism between DNA methylation and demethylation activity.
T7 883-1060 Sentence denotes In addition, methylation in the CG and CHG contexts was negatively associated with gene expression, while that in the CHH context was positively associated with gene expression.
T8 1061-1267 Sentence denotes A hypermethylated/up-regulated transcription factor of MYBS2 inhibited MYB30 expression and possibly enhanced β-Amylase5 expression, promoting subsequent starch degradation in rice stems under MD treatment.
T9 1268-1510 Sentence denotes In addition, a hypermethylated/down-regulated transcription factor of ERF24 was predicted to interact with, and thereby decrease the expression of, abscisic acid 8'-hydroxylase1, thus increasing abscisic acid concentration under MD treatment.
T10 1511-1771 Sentence denotes Our findings provide insight into the DNA methylation dynamics in carbon reserve remobilization of rice stems, demonstrate that MD increased this remobilization, and suggest a link between DNA methylation and gene expression in rice stems during grain filling.