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OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 33-48 http://identifiers.org/oryzabase.gene/6151 denotes Leaf Senescence
T2 453-454 http://identifiers.org/oryzabase.gene/11216 denotes 1
T3 595-610 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T4 669-684 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T5 732-747 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T6 790-805 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T7 1493-1508 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T8 1626-1641 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 19-25 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T2 345-351 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T3 352-359 http://identifiers.org/oryzabase.gene/3109 denotes OsHDAC2
T4 564-570 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T5 654-660 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T6 717-723 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T7 771-777 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T8 921-927 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T9 1113-1119 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T10 1171-1179 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T11 1226-1232 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T12 1279-1287 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T13 1314-1320 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T14 1442-1450 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T15 1471-1479 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T16 1564-1570 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T17 1575-1583 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T37903 19-25 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T57234 345-351 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T75822 352-359 http://identifiers.org/rapdb.locus/Os02g0215200 denotes OsHDAC2
T21291 564-570 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T51365 654-660 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T27554 717-723 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T31765 771-777 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T57232 921-927 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T6494 1113-1119 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T74801 1171-1179 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12
T3077 1226-1232 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T11621 1279-1287 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12
T24052 1314-1320 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T81939 1442-1450 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12
T92452 1471-1479 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12
T6300 1564-1570 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T45571 1575-1583 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 161-165 hunflair:NA:Gene denotes HDAC
M_1 308-312 hunflair:NA:Gene denotes HDAC
M_2 1221-1244 hunflair:NA:CellLine denotes 35S::HDA710-sense lines
M_3 861-872 hunflair:NA:Chemical denotes chlorophyll
M_4 58-70 hunflair:NA:Species denotes Oryza sativa
M_5 52-56 hunflair:NA:Species denotes Rice
M_6 19-25 hunflair:NA:Gene denotes HDA710
M_7 345-351 hunflair:NA:Gene denotes HDA710
M_8 564-570 hunflair:NA:Gene denotes HDA710
M_9 654-660 hunflair:NA:Gene denotes HDA710
M_10 717-723 hunflair:NA:Gene denotes HDA710
M_11 771-777 hunflair:NA:Gene denotes HDA710
M_12 921-927 hunflair:NA:Gene denotes HDA710
M_13 1113-1119 hunflair:NA:Gene denotes HDA710
M_14 1226-1232 hunflair:NA:Gene denotes HDA710
M_15 1314-1320 hunflair:NA:Gene denotes HDA710
M_16 1564-1570 hunflair:NA:Gene denotes HDA710
M_17 1171-1179 hunflair:NA:Gene denotes OsGSTU12
M_18 1279-1287 hunflair:NA:Gene denotes OsGSTU12
M_19 1442-1450 hunflair:NA:Gene denotes OsGSTU12
M_20 1471-1479 hunflair:NA:Gene denotes OsGSTU12
M_21 1575-1583 hunflair:NA:Gene denotes OsGSTU12
M_22 424-432 hunflair:NA:Species denotes japonica
M_23 352-359 hunflair:NA:Gene denotes OsHDAC2
M_24 456-462 hunflair:NA:Species denotes indica
M_25 232-236 hunflair:NA:Species denotes rice
M_26 303-307 hunflair:NA:Species denotes rice
M_27 328-332 hunflair:NA:Species denotes rice
M_28 688-692 hunflair:NA:Species denotes rice
M_29 1512-1516 hunflair:NA:Species denotes rice
M_30 1645-1649 hunflair:NA:Species denotes rice
M_31 98-103 hunflair:NA:Gene denotes HDACs
M_32 19-25 hunflair:NA:CellLine denotes HDA710
M_33 345-351 hunflair:NA:CellLine denotes HDA710
M_34 564-570 hunflair:NA:CellLine denotes HDA710
M_35 654-660 hunflair:NA:CellLine denotes HDA710
M_36 717-723 hunflair:NA:CellLine denotes HDA710
M_37 771-777 hunflair:NA:CellLine denotes HDA710
M_38 921-927 hunflair:NA:CellLine denotes HDA710
M_39 1113-1119 hunflair:NA:CellLine denotes HDA710
M_40 1226-1232 hunflair:NA:CellLine denotes HDA710
M_41 1314-1320 hunflair:NA:CellLine denotes HDA710
M_42 1564-1570 hunflair:NA:CellLine denotes HDA710
M_43 76-96 hunflair:NA:Gene denotes Histone deacetylases

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 19-25 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T2 345-351 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T3 352-359 http://identifiers.org/oryzabase.gene/3109 denotes OsHDAC2
T4 564-570 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T5 595-610 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T6 654-660 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T7 669-684 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T8 717-723 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T9 732-747 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T10 771-777 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T11 790-805 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T12 921-927 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T13 1113-1119 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T14 1171-1179 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T15 1226-1232 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T16 1279-1287 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T17 1314-1320 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T18 1442-1450 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T19 1471-1479 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T20 1493-1508 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T21 1564-1570 http://identifiers.org/oryzabase.gene/3109 denotes HDA710
T22 1575-1583 http://identifiers.org/oryzabase.gene/9530 denotes OsGSTU12
T23 1626-1641 http://identifiers.org/oryzabase.gene/6151 denotes leaf senescence
T67078 19-25 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T67748 345-351 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T76197 352-359 http://identifiers.org/ricegap/LOC_Os02g12380 denotes OsHDAC2
T75216 564-570 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T69484 654-660 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T57462 717-723 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T89392 771-777 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T22501 921-927 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T60103 1113-1119 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T83521 1171-1179 http://identifiers.org/ricegap/LOC_Os10g38360 denotes OsGSTU12
T52627 1226-1232 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T20077 1279-1287 http://identifiers.org/ricegap/LOC_Os10g38360 denotes OsGSTU12
T38168 1314-1320 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T11247 1442-1450 http://identifiers.org/ricegap/LOC_Os10g38360 denotes OsGSTU12
T93386 1471-1479 http://identifiers.org/ricegap/LOC_Os10g38360 denotes OsGSTU12
T53626 1564-1570 http://identifiers.org/ricegap/LOC_Os02g12380 denotes HDA710
T62336 1575-1583 http://identifiers.org/ricegap/LOC_Os10g38360 denotes OsGSTU12
T67257 19-25 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T9781 345-351 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T61236 352-359 http://identifiers.org/rapdb.locus/Os02g0215200 denotes OsHDAC2
T91730 564-570 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T37870 654-660 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T92357 717-723 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T79209 771-777 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T38539 921-927 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T23244 1113-1119 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T75428 1171-1179 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12
T98568 1226-1232 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T74466 1279-1287 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12
T12122 1314-1320 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T16002 1442-1450 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12
T17587 1471-1479 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12
T1921 1564-1570 http://identifiers.org/rapdb.locus/Os02g0215200 denotes HDA710
T57585 1575-1583 http://identifiers.org/rapdb.locus/Os10g0527800 denotes OsGSTU12
T79259 19-25 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T58586 19-25 http://identifiers.org/uniprot/B9F497 denotes HDA710
T54669 345-351 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T90965 345-351 http://identifiers.org/uniprot/B9F497 denotes HDA710
T50640 352-359 http://identifiers.org/uniprot/Q7Y0Y7 denotes OsHDAC2
T13833 352-359 http://identifiers.org/uniprot/B9F497 denotes OsHDAC2
T12081 564-570 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T15449 564-570 http://identifiers.org/uniprot/B9F497 denotes HDA710
T66267 654-660 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T97881 654-660 http://identifiers.org/uniprot/B9F497 denotes HDA710
T56914 717-723 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T82721 717-723 http://identifiers.org/uniprot/B9F497 denotes HDA710
T46554 771-777 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T61740 771-777 http://identifiers.org/uniprot/B9F497 denotes HDA710
T70137 921-927 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T96075 921-927 http://identifiers.org/uniprot/B9F497 denotes HDA710
T8457 1113-1119 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T60134 1113-1119 http://identifiers.org/uniprot/B9F497 denotes HDA710
T94568 1171-1179 http://identifiers.org/uniprot/Q945W6 denotes OsGSTU12
T39357 1226-1232 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T94421 1226-1232 http://identifiers.org/uniprot/B9F497 denotes HDA710
T14329 1279-1287 http://identifiers.org/uniprot/Q945W6 denotes OsGSTU12
T64172 1314-1320 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T24 1314-1320 http://identifiers.org/uniprot/B9F497 denotes HDA710
T25 1442-1450 http://identifiers.org/uniprot/Q945W6 denotes OsGSTU12
T26 1471-1479 http://identifiers.org/uniprot/Q945W6 denotes OsGSTU12
T27 1564-1570 http://identifiers.org/uniprot/Q7Y0Y7 denotes HDA710
T28 1564-1570 http://identifiers.org/uniprot/B9F497 denotes HDA710
T29 1575-1583 http://identifiers.org/uniprot/Q945W6 denotes OsGSTU12
M_0 161-165 hunflair:NA:Gene denotes HDAC
M_1 308-312 hunflair:NA:Gene denotes HDAC
M_2 1221-1244 hunflair:NA:CellLine denotes 35S::HDA710-sense lines
M_3 861-872 hunflair:NA:Chemical denotes chlorophyll
M_4 58-70 hunflair:NA:Species denotes Oryza sativa
M_5 52-56 hunflair:NA:Species denotes Rice
M_6 19-25 hunflair:NA:Gene denotes HDA710
M_7 345-351 hunflair:NA:Gene denotes HDA710
M_8 564-570 hunflair:NA:Gene denotes HDA710
M_9 654-660 hunflair:NA:Gene denotes HDA710
M_10 717-723 hunflair:NA:Gene denotes HDA710
M_11 771-777 hunflair:NA:Gene denotes HDA710
M_12 921-927 hunflair:NA:Gene denotes HDA710
M_13 1113-1119 hunflair:NA:Gene denotes HDA710
M_14 1226-1232 hunflair:NA:Gene denotes HDA710
M_15 1314-1320 hunflair:NA:Gene denotes HDA710
M_16 1564-1570 hunflair:NA:Gene denotes HDA710
M_17 1171-1179 hunflair:NA:Gene denotes OsGSTU12
M_18 1279-1287 hunflair:NA:Gene denotes OsGSTU12
M_19 1442-1450 hunflair:NA:Gene denotes OsGSTU12
M_20 1471-1479 hunflair:NA:Gene denotes OsGSTU12
M_21 1575-1583 hunflair:NA:Gene denotes OsGSTU12
M_22 424-432 hunflair:NA:Species denotes japonica
M_23 352-359 hunflair:NA:Gene denotes OsHDAC2
M_24 456-462 hunflair:NA:Species denotes indica
M_25 232-236 hunflair:NA:Species denotes rice
M_26 303-307 hunflair:NA:Species denotes rice
M_27 328-332 hunflair:NA:Species denotes rice
M_28 688-692 hunflair:NA:Species denotes rice
M_29 1512-1516 hunflair:NA:Species denotes rice
M_30 1645-1649 hunflair:NA:Species denotes rice
M_31 98-103 hunflair:NA:Gene denotes HDACs
M_32 19-25 hunflair:NA:CellLine denotes HDA710
M_33 345-351 hunflair:NA:CellLine denotes HDA710
M_34 564-570 hunflair:NA:CellLine denotes HDA710
M_35 654-660 hunflair:NA:CellLine denotes HDA710
M_36 717-723 hunflair:NA:CellLine denotes HDA710
M_37 771-777 hunflair:NA:CellLine denotes HDA710
M_38 921-927 hunflair:NA:CellLine denotes HDA710
M_39 1113-1119 hunflair:NA:CellLine denotes HDA710
M_40 1226-1232 hunflair:NA:CellLine denotes HDA710
M_41 1314-1320 hunflair:NA:CellLine denotes HDA710
M_42 1564-1570 hunflair:NA:CellLine denotes HDA710
M_43 76-96 hunflair:NA:Gene denotes Histone deacetylases

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-75 Sentence denotes Over-Expression of HDA710 Delays Leaf Senescence in Rice (Oryza sativa L.).
T2 76-151 Sentence denotes Histone deacetylases (HDACs) influence chromatin state and gene expression.
T3 152-237 Sentence denotes Eighteen HDAC genes with important biological functions have been identified in rice.
T4 238-344 Sentence denotes In this study, we surveyed the gene presence frequency of all 18 rice HDAC genes in 3,010 rice accessions.
T5 345-474 Sentence denotes HDA710/OsHDAC2 showed insertion/deletion (InDel) polymorphisms in almost 98.8% japonica accessions but only 1% indica accessions.
T6 475-611 Sentence denotes InDel polymorphism association analysis showed that accessions with partial deletions in HDA710 tended to display early leaf senescence.
T7 612-693 Sentence denotes Further transgenic results confirmed that HDA710 delayed leaf senescence in rice.
T8 694-806 Sentence denotes The over-expression of HDA710 delayed leaf senescence, and the knock-down of HDA710 accelerated leaf senescence.
T9 807-1041 Sentence denotes Transcriptome analysis showed that photosynthesis and chlorophyll biosynthesis related genes were up-regulated in HDA710 over-expression lines, while some programmed cell death and disease resistance related genes were down-regulated.
T10 1042-1245 Sentence denotes Co-expression network analysis with gene expression view revealed that HDA710 was co-expressed with multiple genes, particularly OsGSTU12, which was significantly up-regulated in 35S::HDA710-sense lines.
T11 1246-1451 Sentence denotes InDels in the promoter region of OsGSTU12 and in the gene region of HDA710 occurred coincidentally among more than 90% accessions, and we identified multiple W-box motifs at the InDel position of OsGSTU12.
T12 1452-1517 Sentence denotes Over-expression of OsGSTU12 also delayed leaf senescence in rice.
T13 1518-1650 Sentence denotes Taken together, our results suggest that both HDA710 and OsGSTU12 are involved in regulating the process of leaf senescence in rice.