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OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 896-901 http://identifiers.org/oryzabase.gene/6771 denotes OsPDS
T2 903-909 http://identifiers.org/oryzabase.gene/8503 denotes OsDEP1
T3 914-920 http://identifiers.org/oryzabase.gene/2866 denotes OsROC5
T3640 896-901 http://identifiers.org/rapdb.locus/Os03g0184000 denotes OsPDS
T33441 903-909 http://identifiers.org/rapdb.locus/Os09g0441900 denotes OsDEP1
T69594 914-920 http://identifiers.org/rapdb.locus/Os02g0674800 denotes OsROC5

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 43-52 http://identifiers.org/oryzabase.gene/17712 denotes Ubiquitin
T2 694-703 http://identifiers.org/oryzabase.gene/17712 denotes ubiquitin

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 791-799 hunflair:NA:Gene denotes Cas9-UBA
M_1 1236-1244 hunflair:NA:Gene denotes Cas9-UBA
M_2 694-703 hunflair:NA:Gene denotes ubiquitin
M_3 914-920 hunflair:NA:Gene denotes OsROC5
M_4 92-97 hunflair:NA:Species denotes Plant
M_5 19-30 hunflair:NA:Gene denotes CRISPR-Cas9
M_6 155-166 hunflair:NA:Gene denotes CRISPR-Cas9
M_7 351-362 hunflair:NA:Gene denotes CRISPR-Cas9
M_8 542-553 hunflair:NA:Gene denotes CRISPR-Cas9
M_9 1229-1240 hunflair:NA:Gene denotes CRISPR-Cas9
M_10 1332-1343 hunflair:NA:Gene denotes CRISPR-Cas9
M_11 43-52 hunflair:NA:Gene denotes Ubiquitin
M_12 891-895 hunflair:NA:Species denotes rice
M_13 984-988 hunflair:NA:Species denotes rice
M_14 1024-1028 hunflair:NA:Species denotes rice
M_15 903-909 hunflair:NA:Gene denotes OsDEP1
M_16 896-901 hunflair:NA:Gene denotes OsPDS
M_17 26-30 hunflair:NA:Gene denotes Cas9
M_18 162-166 hunflair:NA:Gene denotes Cas9
M_19 358-362 hunflair:NA:Gene denotes Cas9
M_20 549-553 hunflair:NA:Gene denotes Cas9
M_21 756-760 hunflair:NA:Gene denotes Cas9
M_22 791-795 hunflair:NA:Gene denotes Cas9
M_23 1123-1127 hunflair:NA:Gene denotes Cas9
M_24 1236-1240 hunflair:NA:Gene denotes Cas9
M_25 1339-1343 hunflair:NA:Gene denotes Cas9

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 43-52 http://identifiers.org/oryzabase.gene/7107 denotes Ubiquitin
T2 43-52 http://identifiers.org/oryzabase.gene/17712 denotes Ubiquitin
T3 694-703 http://identifiers.org/oryzabase.gene/7107 denotes ubiquitin
T4 694-703 http://identifiers.org/oryzabase.gene/17712 denotes ubiquitin
T5 896-901 http://identifiers.org/oryzabase.gene/6771 denotes OsPDS
T6 903-909 http://identifiers.org/oryzabase.gene/8503 denotes OsDEP1
T7 914-920 http://identifiers.org/oryzabase.gene/2866 denotes OsROC5
T59658 43-52 http://identifiers.org/ricegap/LOC_Os09g39500 denotes Ubiquitin
T70816 43-52 http://identifiers.org/ricegap/LOC_Os06g44080 denotes Ubiquitin
T42854 694-703 http://identifiers.org/ricegap/LOC_Os09g39500 denotes ubiquitin
T96078 694-703 http://identifiers.org/ricegap/LOC_Os06g44080 denotes ubiquitin
T54121 896-901 http://identifiers.org/ricegap/LOC_Os03g08570 denotes OsPDS
T27195 903-909 http://identifiers.org/ricegap/LOC_Os09g26999 denotes OsDEP1
T99350 914-920 http://identifiers.org/ricegap/LOC_Os02g45250 denotes OsROC5
T13680 43-52 http://identifiers.org/rapdb.locus/Os09g0568400 denotes Ubiquitin
T86659 43-52 http://identifiers.org/rapdb.locus/Os06g0650100 denotes Ubiquitin
T31117 694-703 http://identifiers.org/rapdb.locus/Os09g0568400 denotes ubiquitin
T93295 694-703 http://identifiers.org/rapdb.locus/Os06g0650100 denotes ubiquitin
T42607 896-901 http://identifiers.org/rapdb.locus/Os03g0184000 denotes OsPDS
T33799 903-909 http://identifiers.org/rapdb.locus/Os09g0441900 denotes OsDEP1
T51629 914-920 http://identifiers.org/rapdb.locus/Os02g0674800 denotes OsROC5
T69968 43-52 http://identifiers.org/uniprot/Q7XYD4 denotes Ubiquitin
T16032 43-52 http://identifiers.org/uniprot/P0C031 denotes Ubiquitin
T69684 896-901 http://identifiers.org/uniprot/Q0DUI8 denotes OsPDS
T66487 903-909 http://identifiers.org/uniprot/Q67UU9 denotes OsDEP1
T9366 903-909 http://identifiers.org/uniprot/B9VI84 denotes OsDEP1
T30577 903-909 http://identifiers.org/uniprot/B8Y995 denotes OsDEP1
T86335 914-920 http://identifiers.org/uniprot/Q6EPF0 denotes OsROC5
M_0 791-799 hunflair:NA:Gene denotes Cas9-UBA
M_1 1236-1244 hunflair:NA:Gene denotes Cas9-UBA
M_2 694-703 hunflair:NA:Gene denotes ubiquitin
M_3 914-920 hunflair:NA:Gene denotes OsROC5
M_4 92-97 hunflair:NA:Species denotes Plant
M_5 19-30 hunflair:NA:Gene denotes CRISPR-Cas9
M_6 155-166 hunflair:NA:Gene denotes CRISPR-Cas9
M_7 351-362 hunflair:NA:Gene denotes CRISPR-Cas9
M_8 542-553 hunflair:NA:Gene denotes CRISPR-Cas9
M_9 1229-1240 hunflair:NA:Gene denotes CRISPR-Cas9
M_10 1332-1343 hunflair:NA:Gene denotes CRISPR-Cas9
M_11 43-52 hunflair:NA:Gene denotes Ubiquitin
M_12 891-895 hunflair:NA:Species denotes rice
M_13 984-988 hunflair:NA:Species denotes rice
M_14 1024-1028 hunflair:NA:Species denotes rice
M_15 903-909 hunflair:NA:Gene denotes OsDEP1
M_16 896-901 hunflair:NA:Gene denotes OsPDS
M_17 26-30 hunflair:NA:Gene denotes Cas9
M_18 162-166 hunflair:NA:Gene denotes Cas9
M_19 358-362 hunflair:NA:Gene denotes Cas9
M_20 549-553 hunflair:NA:Gene denotes Cas9
M_21 756-760 hunflair:NA:Gene denotes Cas9
M_22 791-795 hunflair:NA:Gene denotes Cas9
M_23 1123-1127 hunflair:NA:Gene denotes Cas9
M_24 1236-1240 hunflair:NA:Gene denotes Cas9
M_25 1339-1343 hunflair:NA:Gene denotes Cas9

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-113 Sentence denotes The Improvement of CRISPR-Cas9 System With Ubiquitin-Associated Domain Fusion for Efficient Plant Genome Editing.
T2 114-281 Sentence denotes Genome editing technology represented by CRISPR-Cas9 had been widely used in many biological fields such as gene function analysis, gene therapy, and crop improvement.
T3 282-475 Sentence denotes However, in the face of the complexity of the eukaryotic genome, the CRISPR-Cas9 genome editing tools have shown an unstable editing efficiency with large variability at different target sites.
T4 476-584 Sentence denotes It was important to further improve the editing efficiency of the CRISPR-Cas9 system among the whole genome.
T5 585-859 Sentence denotes In this study, based on the previous single transcription unit genome editing system (STU-SpCas9), using the ubiquitin-associated domain (UBA) to enhance the stability of Cas9 protein, we constructed three Cas9-UBA fusion systems (SpCas9-SD01, SpCas9-SD02, and SpCas9-SD03).
T6 860-1036 Sentence denotes Four different target sites of rice OsPDS, OsDEP1 and OsROC5 genes were chosen to evaluate the genome editing efficiency in rice protoplasts and stable transformed rice plants.
T7 1037-1219 Sentence denotes The results showed that the fusion of UBA domains did not affect the cleavage mode of Cas9 protein, and effectively increase the editing efficiency of STU-SpCas9 at the target sites.
T8 1220-1354 Sentence denotes This new CRISPR-Cas9-UBA system provided a new strategy and tool for improving the genome editing efficiency of CRISPR-Cas9 in plants.