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LitCovid-OGER-BB

Id Subject Object Predicate Lexical cue
T1 11-19 SP_7 denotes COVID-19
T2 59-70 NCBITaxon:11118 denotes coronavirus
T3 71-81 SP_7 denotes SARS-CoV-2
T4 104-114 SP_7 denotes SARS-CoV-2
T5 129-134 SP_6 denotes human
T6 129-134 NCBITaxon:9606 denotes human
T7 135-146 NCBITaxon:11118 denotes coronavirus
T8 209-214 SP_6 denotes human
T9 209-214 NCBITaxon:9606 denotes human
T10 225-230 NCBITaxon:10239 denotes virus
T11 238-246 SP_7 denotes COVID-19
T12 351-362 NCBITaxon:1 denotes individuals
T13 364-374 SP_7 denotes SARS-CoV-2
T14 403-408 SP_6 denotes human
T15 403-408 NCBITaxon:9606 denotes human
T16 409-422 NCBITaxon:11118 denotes coronaviruses
T17 435-442 SO:0001026 denotes genomic
T18 459-467 SP_10 denotes SARS-CoV
T19 473-478 NCBITaxon:10239 denotes virus
T20 503-507 SP_10 denotes SARS
T21 528-541 NCBITaxon:11118 denotes coronaviruses
T22 543-553 SP_7 denotes SARS-CoV-2
T23 721-726 NCBITaxon:10239 denotes virus
T24 817-822 CHEBI:23888 denotes drugs
T25 817-822 CHEBI:23888 denotes drugs
T26 896-906 SP_7 denotes SARS-CoV-2
T27 1065-1070 CHEBI:23888 denotes drugs
T28 1065-1070 CHEBI:23888 denotes drugs

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 209-219 Body_part denotes human body http://purl.org/sig/ont/fma/fma305853

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 11-19 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 71-79 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T3 104-112 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 238-246 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 307-316 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 364-372 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 459-467 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 503-507 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 543-551 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 896-904 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 21-22 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 129-134 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T4 147-150 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T5 186-187 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 209-214 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T7 225-230 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 248-249 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 375-378 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 403-408 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T11 473-478 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T12 721-726 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 1014-1021 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 817-822 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T2 1065-1070 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3 11-19 Disease denotes COVID-19 MESH:C000657245
4 53-70 Species denotes novel coronavirus Tax:2697049
5 71-81 Species denotes SARS-CoV-2 Tax:2697049
20 104-114 Species denotes SARS-CoV-2 Tax:2697049
21 129-146 Species denotes human coronavirus Tax:694448
22 209-214 Species denotes human Tax:9606
23 238-246 Disease denotes COVID-19 MESH:C000657245
24 275-294 Disease denotes shortness of breath MESH:D004417
25 296-301 Disease denotes fever MESH:D005334
26 307-316 Disease denotes pneumonia MESH:D011014
27 364-374 Species denotes SARS-CoV-2 Tax:2697049
28 403-408 Species denotes human Tax:9606
29 409-422 Species denotes coronaviruses Tax:11118
30 459-467 Species denotes SARS-CoV Tax:694009
31 528-541 Species denotes coronaviruses Tax:11118
32 543-553 Species denotes SARS-CoV-2 Tax:2697049
33 896-906 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-82 Sentence denotes A Guide to COVID-19: a global pandemic caused by the novel coronavirus SARS-CoV-2.
T2 83-201 Sentence denotes The emergence of the SARS-CoV-2 strain of the human coronavirus has thrown the world into the midst of a new pandemic.
T3 202-363 Sentence denotes In the human body, the virus causes COVID-19, a disease characterized by shortness of breath, fever, and pneumonia, which can be fatal in vulnerable individuals.
T4 364-508 Sentence denotes SARS-CoV-2 has characteristics of past human coronaviruses, with close genomic similarities to SARS-CoV, the virus that causes the disease SARS.
T5 509-647 Sentence denotes Like these related coronaviruses, SARS-CoV-2 is transmitted through the inhalation of droplets and interaction with contaminated surfaces.
T6 648-863 Sentence denotes Across the world, laboratories are developing candidate vaccines for the virus - with vaccine trials underway in the US and the United Kingdom - and considering various drugs for possible treatments and prophylaxis.
T7 864-1084 Sentence denotes Here, we provide an overview of SARS-CoV-2 by analyzing its virology, epidemiology, and modes of transmission while examining the current progress of testing procedures and possible treatments through drugs and vaccines.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 275-294 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T2 296-301 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 307-316 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

hydroxychloroquine

Id Subject Object Predicate Lexical cue hp_id
T1 275-294 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T2 296-301 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 307-316 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid_AGAC_only

Id Subject Object Predicate Lexical cue
p22121s7 231-237 Reg denotes causes
p22121s8 238-243 Disease denotes COVID
p22121s9 243-246 Disease denotes -19