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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1163-1171 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T2 1451-1460 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T3 1491-1504 Body_part denotes interleukin 6 http://purl.org/sig/ont/fma/fma264829
T4 1491-1502 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 0-8 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 30-34 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268
T3 72-119 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 72-105 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T5 121-129 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 231-235 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268
T7 382-392 Disease denotes (COVID)-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 540-548 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 551-561 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T10 614-622 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 749-757 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 760-769 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 894-902 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 905-914 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 1224-1232 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 1233-1242 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T17 1632-1640 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 133-136 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 270-277 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T3 405-408 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 513-520 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T5 524-530 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T6 607-612 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T7 686-687 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 945-951 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T9 1112-1115 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 1491-1504 http://purl.obolibrary.org/obo/PR_000001393 denotes interleukin 6
T11 1565-1566 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 924-934 Chemical denotes antivirals http://purl.obolibrary.org/obo/CHEBI_22587
T2 974-984 Chemical denotes remdesivir http://purl.obolibrary.org/obo/CHEBI_145994
T3 1038-1057 Chemical denotes lopinavir/ritonavir http://purl.obolibrary.org/obo/CHEBI_145924
T4 1038-1047 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T5 1048-1057 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T6 1275-1298 Chemical denotes antiinflammatory agents http://purl.obolibrary.org/obo/CHEBI_67079
T7 1354-1372 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T8 1470-1481 Chemical denotes tocilizumab http://purl.obolibrary.org/obo/CHEBI_64360

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1163-1177 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T2 1233-1242 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 1253-1273 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 0-8 Disease denotes COVID-19 MESH:C000657245
3 30-34 Disease denotes AIDS MESH:D000163
23 72-119 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
24 121-131 Species denotes SARS-CoV-2 Tax:2697049
25 231-235 Disease denotes AIDS MESH:D000163
26 362-381 Disease denotes Coronavirus Disease MESH:D018352
27 383-388 Disease denotes COVID MESH:C000657245
28 540-561 Disease denotes SARS-CoV-2 infections MESH:C000657245
29 614-622 Disease denotes COVID-19 MESH:C000657245
30 623-629 Disease denotes deaths MESH:D003643
31 754-769 Disease denotes CoV-2 infection MESH:C000657245
32 894-914 Disease denotes SARS-CoV-2 infection MESH:C000657245
33 974-984 Chemical denotes remdesivir MESH:C000606551
34 1038-1057 Chemical denotes lopinavir/ritonavir MESH:C558899
35 1224-1242 Disease denotes COVID-19 pneumonia MESH:C000657245
36 1247-1273 Disease denotes acute respiratory distress MESH:D012128
37 1338-1352 Chemical denotes orticosteroids
38 1354-1372 Chemical denotes hydroxychloroquine MESH:D006886
39 1470-1481 Chemical denotes tocilizumab MESH:C502936
40 1491-1504 Gene denotes interleukin 6 Gene:3569
41 1632-1640 Disease denotes COVID-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-48 Sentence denotes COVID-19 Comes 40 Years After AIDS - Any Lesson?
T2 49-202 Sentence denotes The pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has hit health-care systems and societies in an unprecedented manner.
T3 203-356 Sentence denotes In 1981, the first cases of AIDS were reported and wide diagnostic testing helped to characterize high-risk groups and the global burden of the epidemic.
T4 357-501 Sentence denotes With Coronavirus Disease (COVID)-19, everything has happened too fast and both cases and fatalities are huge but still uncertain in most places.
T5 502-613 Sentence denotes Diagnostic testing of active and past SARS-CoV-2 infections needs to expand rapidly, ideally using rapid tests.
T6 614-770 Sentence denotes COVID-19 deaths are highly concentrated in the elderly population, with a large proportion of fatalities being "with" rather than "by" SARS-CoV-2 infection.
T7 771-851 Sentence denotes They are often the result of inadequate health care due to overwhelming demands.
T8 852-915 Sentence denotes To date, there is no specific therapy for SARS-CoV-2 infection.
T9 916-1018 Sentence denotes Several antivirals are being tested clinically, including remdesivir, at this time the most promising.
T10 1019-1127 Sentence denotes For others such as lopinavir/ritonavir, neither significant virological nor clinical benefit has been shown.
T11 1128-1322 Sentence denotes Given the characteristic pulmonary cytokine storm underlying the pathogenic mechanism of severe COVID-19 pneumonia and acute respiratory distress, antiinflammatory agents are being investigated.
T12 1323-1391 Sentence denotes The benefit of orticosteroids, hydroxychloroquine, etc., is limited.
T13 1392-1553 Sentence denotes Monoclonal antibodies targeting different pro-inflammatory cytokines, such as tocilizumab, an anti-interleukin 6 agent, are being tried with encouraging results.
T14 1554-1650 Sentence denotes Ultimately a protective vaccine will be the best response for controlling the COVID-19 pandemic.

LitCovid-OGER-BB

Id Subject Object Predicate Lexical cue
T1 0-8 SP_7 denotes COVID-19
T2 72-84 SP_7 denotes severe acute
T3 85-96 SP_7;UBERON:0001004 denotes respiratory
T4 97-119 SP_7 denotes syndrome coronavirus 2
T5 121-131 SP_7 denotes SARS-CoV-2
T6 362-373 NCBITaxon:11118 denotes Coronavirus
T7 540-550 SP_7 denotes SARS-CoV-2
T8 614-622 SP_7 denotes COVID-19
T9 623-629 GO:0016265 denotes deaths
T10 749-759 SP_7 denotes SARS-CoV-2
T11 894-904 SP_7 denotes SARS-CoV-2
T12 974-984 DG_28 denotes remdesivir
T13 1038-1047 DG_23 denotes lopinavir
T14 1048-1057 DG_30 denotes ritonavir
T15 1153-1162 UBERON:0002048 denotes pulmonary
T16 1224-1232 SP_7 denotes COVID-19
T17 1253-1264 UBERON:0001004 denotes respiratory
T18 1292-1298 CHEBI:67079;CHEBI:67079 denotes agents
T19 1354-1372 CHEBI:5801;DG_20;CHEBI:5801 denotes hydroxychloroquine
T20 1403-1413 GO:0042571 denotes antibodies
T21 1470-1481 DG_35 denotes tocilizumab
T22 1491-1504 PR:000001393 denotes interleukin 6
T23 1616-1627 GO:0065007 denotes controlling
T24 1632-1640 SP_7 denotes COVID-19

hydroxychloroquine

Id Subject Object Predicate Lexical cue hp_id
T1 1163-1177 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T2 1233-1242 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 1253-1273 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

Inflammaging

Id Subject Object Predicate Lexical cue
T1 0-48 Sentence denotes COVID-19 Comes 40 Years After AIDS - Any Lesson?
T2 49-202 Sentence denotes The pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has hit health-care systems and societies in an unprecedented manner.
T3 203-356 Sentence denotes In 1981, the first cases of AIDS were reported and wide diagnostic testing helped to characterize high-risk groups and the global burden of the epidemic.
T4 357-501 Sentence denotes With Coronavirus Disease (COVID)-19, everything has happened too fast and both cases and fatalities are huge but still uncertain in most places.
T5 502-613 Sentence denotes Diagnostic testing of active and past SARS-CoV-2 infections needs to expand rapidly, ideally using rapid tests.
T6 614-770 Sentence denotes COVID-19 deaths are highly concentrated in the elderly population, with a large proportion of fatalities being "with" rather than "by" SARS-CoV-2 infection.
T7 771-851 Sentence denotes They are often the result of inadequate health care due to overwhelming demands.
T8 852-915 Sentence denotes To date, there is no specific therapy for SARS-CoV-2 infection.
T9 916-1018 Sentence denotes Several antivirals are being tested clinically, including remdesivir, at this time the most promising.
T10 1019-1127 Sentence denotes For others such as lopinavir/ritonavir, neither significant virological nor clinical benefit has been shown.
T11 1128-1322 Sentence denotes Given the characteristic pulmonary cytokine storm underlying the pathogenic mechanism of severe COVID-19 pneumonia and acute respiratory distress, antiinflammatory agents are being investigated.
T12 1323-1391 Sentence denotes The benefit of orticosteroids, hydroxychloroquine, etc., is limited.
T13 1392-1553 Sentence denotes Monoclonal antibodies targeting different pro-inflammatory cytokines, such as tocilizumab, an anti-interleukin 6 agent, are being tried with encouraging results.
T14 1554-1650 Sentence denotes Ultimately a protective vaccine will be the best response for controlling the COVID-19 pandemic.
T1 0-48 Sentence denotes COVID-19 Comes 40 Years After AIDS - Any Lesson?
T2 49-202 Sentence denotes The pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has hit health-care systems and societies in an unprecedented manner.
T3 203-356 Sentence denotes In 1981, the first cases of AIDS were reported and wide diagnostic testing helped to characterize high-risk groups and the global burden of the epidemic.
T4 357-501 Sentence denotes With Coronavirus Disease (COVID)-19, everything has happened too fast and both cases and fatalities are huge but still uncertain in most places.
T5 502-613 Sentence denotes Diagnostic testing of active and past SARS-CoV-2 infections needs to expand rapidly, ideally using rapid tests.
T6 614-770 Sentence denotes COVID-19 deaths are highly concentrated in the elderly population, with a large proportion of fatalities being "with" rather than "by" SARS-CoV-2 infection.
T7 771-851 Sentence denotes They are often the result of inadequate health care due to overwhelming demands.
T8 852-915 Sentence denotes To date, there is no specific therapy for SARS-CoV-2 infection.
T9 916-1018 Sentence denotes Several antivirals are being tested clinically, including remdesivir, at this time the most promising.
T10 1019-1127 Sentence denotes For others such as lopinavir/ritonavir, neither significant virological nor clinical benefit has been shown.
T11 1128-1322 Sentence denotes Given the characteristic pulmonary cytokine storm underlying the pathogenic mechanism of severe COVID-19 pneumonia and acute respiratory distress, antiinflammatory agents are being investigated.
T12 1323-1391 Sentence denotes The benefit of orticosteroids, hydroxychloroquine, etc., is limited.
T13 1392-1553 Sentence denotes Monoclonal antibodies targeting different pro-inflammatory cytokines, such as tocilizumab, an anti-interleukin 6 agent, are being tried with encouraging results.
T14 1554-1650 Sentence denotes Ultimately a protective vaccine will be the best response for controlling the COVID-19 pandemic.