PubMed:32351040 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/32351040","sourcedb":"PubMed","sourceid":"32351040","source_url":"https://www.ncbi.nlm.nih.gov/pubmed/32351040","text":"COVID-19 in kidney transplant recipients.\nThere is minimal information on COVID-19 in immunocompromised individuals. We have studied 10 patients treated at 12 adult care hospitals. Ten kidney transplant recipients tested positive for SARS-CoV-2 by PCR, and 9 were admitted. The median age was 57 (IQR 47-67), 60% were male, 40% Caucasian, and 30% Black/African American. Median time from transplant to COVID-19 testing was 2822 days (IQR 1272-4592). The most common symptom was fever, followed by cough, myalgia, chills, and fatigue. The most common CXR and CT abnormality was multifocal patchy opacities. 3 patients had no abnormal findings. Leukopenia was seen in 20% of patients, and allograft function was stable in 50% of patients. 9 patients were on tacrolimus and a mycophenolic antimetabolite, and 70% were on prednisone. Hospitalized patients had their antimetabolite agent stopped. All hospitalized patients received hydroxychloroquine (HCQ) and azithromycin. 3 patients died (30%), five (50%) developed acute kidney injury. Kidney transplant recipients infected with COVID-19 should be monitored closely in the setting of lowered immunosuppression. Most individuals required hospitalization and presenting symptoms were similar to those of non-transplant individuals.","tracks":[{"project":"LitCovid-OGER-BB","denotations":[{"id":"T1","span":{"begin":0,"end":8},"obj":"SP_7"},{"id":"T2","span":{"begin":12,"end":18},"obj":"UBERON:0002113"},{"id":"T3","span":{"begin":74,"end":78},"obj":"NCBITaxon:11118"},{"id":"T4","span":{"begin":79,"end":82},"obj":"SP_7"},{"id":"T5","span":{"begin":104,"end":115},"obj":"NCBITaxon:1"},{"id":"T6","span":{"begin":159,"end":164},"obj":"UBERON:0007023"},{"id":"T7","span":{"begin":185,"end":191},"obj":"UBERON:0002113"},{"id":"T8","span":{"begin":234,"end":238},"obj":"SP_7"},{"id":"T9","span":{"begin":236,"end":238},"obj":"UBERON:0001004"},{"id":"T10","span":{"begin":238,"end":244},"obj":"SP_7"},{"id":"T11","span":{"begin":402,"end":410},"obj":"SP_7"},{"id":"T12","span":{"begin":497,"end":502},"obj":"UBERON:0002048"},{"id":"T13","span":{"begin":550,"end":551},"obj":"UBERON:0001443"},{"id":"T14","span":{"begin":756,"end":766},"obj":"CHEBI:15891"},{"id":"T15","span":{"begin":756,"end":766},"obj":"CHEBI:15891"},{"id":"T16","span":{"begin":773,"end":785},"obj":"CHEBI:62932"},{"id":"T17","span":{"begin":773,"end":785},"obj":"CHEBI:62932"},{"id":"T18","span":{"begin":818,"end":828},"obj":"CHEBI:8382"},{"id":"T19","span":{"begin":818,"end":828},"obj":"CHEBI:8382"},{"id":"T20","span":{"begin":927,"end":945},"obj":"CHEBI:5801"},{"id":"T21","span":{"begin":927,"end":945},"obj":"DG_20"},{"id":"T22","span":{"begin":927,"end":945},"obj":"CHEBI:5801"},{"id":"T23","span":{"begin":956,"end":968},"obj":"CHEBI:2955"},{"id":"T24","span":{"begin":956,"end":968},"obj":"DG_6"},{"id":"T25","span":{"begin":956,"end":968},"obj":"CHEBI:2955"},{"id":"T26","span":{"begin":981,"end":985},"obj":"GO:0016265"},{"id":"T27","span":{"begin":1020,"end":1026},"obj":"UBERON:0002113"},{"id":"T28","span":{"begin":1035,"end":1041},"obj":"UBERON:0002113"},{"id":"T29","span":{"begin":1078,"end":1086},"obj":"SP_7"},{"id":"T30","span":{"begin":1165,"end":1176},"obj":"NCBITaxon:1"},{"id":"T31","span":{"begin":1266,"end":1277},"obj":"NCBITaxon:1"}],"namespaces":[{"prefix":"NCBITaxon","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T2","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T3","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T4","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T5","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T6","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T7","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T8","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T9","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T10","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T11","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T12","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T13","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T14","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T15","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T16","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T17","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T18","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T19","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T20","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T21","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T22","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T23","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T24","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T25","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T26","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T27","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T28","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T29","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T30","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T31","pred":"source","obj":"LitCovid-OGER-BB"}]},{"project":"hydroxychloroquine","denotations":[{"id":"T1","span":{"begin":478,"end":483},"obj":"Phenotype"},{"id":"T2","span":{"begin":497,"end":502},"obj":"Phenotype"},{"id":"T3","span":{"begin":504,"end":511},"obj":"Phenotype"},{"id":"T4","span":{"begin":513,"end":519},"obj":"Phenotype"},{"id":"T5","span":{"begin":525,"end":532},"obj":"Phenotype"},{"id":"T6","span":{"begin":643,"end":653},"obj":"Phenotype"},{"id":"T7","span":{"begin":1014,"end":1033},"obj":"Phenotype"}],"attributes":[{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0012735"},{"id":"A5","pred":"hp_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/HP_0012378"},{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0025143"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/HP_0003326"},{"id":"A7","pred":"hp_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/HP_0001919"},{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A6","pred":"hp_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/HP_0001882"},{"subj":"T1","pred":"source","obj":"hydroxychloroquine"},{"subj":"T2","pred":"source","obj":"hydroxychloroquine"},{"subj":"T3","pred":"source","obj":"hydroxychloroquine"},{"subj":"T4","pred":"source","obj":"hydroxychloroquine"},{"subj":"T5","pred":"source","obj":"hydroxychloroquine"},{"subj":"T6","pred":"source","obj":"hydroxychloroquine"},{"subj":"T7","pred":"source","obj":"hydroxychloroquine"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-OGER-BB","color":"#ec9793","default":true},{"id":"hydroxychloroquine","color":"#93a9ec"}]}]}}