PubMed:32349982
Annnotations
LitCovid-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 27-35 | SP_7 | denotes | COVID-19 |
| T2 | 150-162 | UBERON:0005169 | denotes | interstitial |
| T3 | 163-167 | UBERON:0002048 | denotes | lung |
| T4 | 198-215 | CHEBI:35705 | denotes | immunosuppressive |
| T5 | 198-215 | CHEBI:35705 | denotes | immunosuppressive |
| T6 | 359-410 | SP_7 | denotes | Severe Acute Respiratory Syndrome - Coronavirus - 2 |
| T7 | 412-422 | SP_7 | denotes | SARS-CoV-2 |
| T8 | 424-429 | NCBITaxon:10239 | denotes | virus |
| T9 | 671-681 | SP_7 | denotes | SARS-CoV-2 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 163-167 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 163-167 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 0-18 | Disease | denotes | Systemic sclerosis | http://purl.obolibrary.org/obo/MONDO_0005100 |
| T2 | 27-35 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T3 | 52-63 | Disease | denotes | Scleroderma | http://purl.obolibrary.org/obo/MONDO_0005100|http://purl.obolibrary.org/obo/MONDO_0019340 |
| T5 | 150-175 | Disease | denotes | interstitial lung disease | http://purl.obolibrary.org/obo/MONDO_0015925 |
| T6 | 163-175 | Disease | denotes | lung disease | http://purl.obolibrary.org/obo/MONDO_0005275 |
| T7 | 227-245 | Disease | denotes | systemic sclerosis | http://purl.obolibrary.org/obo/MONDO_0005100 |
| T8 | 247-250 | Disease | denotes | SSc | http://purl.obolibrary.org/obo/MONDO_0005100 |
| T9 | 359-410 | Disease | denotes | Severe Acute Respiratory Syndrome - Coronavirus - 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T10 | 412-420 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T11 | 424-439 | Disease | denotes | virus infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T12 | 430-439 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T13 | 463-474 | Disease | denotes | Scleroderma | http://purl.obolibrary.org/obo/MONDO_0005100|http://purl.obolibrary.org/obo/MONDO_0019340 |
| T15 | 671-679 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T16 | 682-691 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T17 | 836-839 | Disease | denotes | SSc | http://purl.obolibrary.org/obo/MONDO_0005100 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 163-167 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T2 | 163-167 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T3 | 291-292 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T4 | 424-429 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 52-63 | Phenotype | denotes | Scleroderma | http://purl.obolibrary.org/obo/HP_0100324 |
| T2 | 150-175 | Phenotype | denotes | interstitial lung disease | http://purl.obolibrary.org/obo/HP_0006530 |
| T3 | 463-474 | Phenotype | denotes | Scleroderma | http://purl.obolibrary.org/obo/HP_0100324 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-45 | Sentence | denotes | Systemic sclerosis and the COVID-19 pandemic: |
| T2 | 46-117 | Sentence | denotes | World Scleroderma Foundation preliminary advice for patient management. |
| T3 | 118-440 | Sentence | denotes | Due to the frequent presence of interstitial lung disease and widespread use of immunosuppressive treatment, systemic sclerosis (SSc) patients may be considered at risk for a more severe disease course and higher mortality when they develop Severe Acute Respiratory Syndrome - Coronavirus - 2 (SARS-CoV-2) virus infection. |
| T4 | 441-733 | Sentence | denotes | Therefore, with World Scleroderma Foundation endorsement, experts from different specialties including rheumatology, virology and clinical immunology gathered virtually to answer to the main practical clinical questions regarding SARS-CoV-2 infection coming from both patients and physicians. |
| T5 | 734-849 | Sentence | denotes | This preliminary advice is aligned with other national and international recommendations, adapted for SSc patients. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 3 | 9-18 | Disease | denotes | sclerosis | MESH:D012598 |
| 4 | 27-35 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 5 | 98-105 | Species | denotes | patient | Tax:9606 |
| 16 | 163-175 | Disease | denotes | lung disease | MESH:D008171 |
| 17 | 227-245 | Disease | denotes | systemic sclerosis | MESH:D012595 |
| 18 | 252-260 | Species | denotes | patients | Tax:9606 |
| 19 | 331-340 | Disease | denotes | mortality | MESH:D003643 |
| 20 | 359-410 | Species | denotes | Severe Acute Respiratory Syndrome - Coronavirus - 2 | Tax:2697049 |
| 21 | 412-422 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 22 | 430-439 | Disease | denotes | infection | MESH:D007239 |
| 23 | 671-691 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 24 | 709-717 | Species | denotes | patients | Tax:9606 |
| 25 | 840-848 | Species | denotes | patients | Tax:9606 |
hydroxychloroquine
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 52-63 | Phenotype | denotes | Scleroderma | http://purl.obolibrary.org/obo/HP_0100324 |
| T2 | 150-175 | Phenotype | denotes | interstitial lung disease | http://purl.obolibrary.org/obo/HP_0006530 |
| T3 | 463-474 | Phenotype | denotes | Scleroderma | http://purl.obolibrary.org/obo/HP_0100324 |