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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 0-8 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 108-116 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 325-334 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T4 452-460 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 559-567 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 773-781 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 970-978 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 1583-1591 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 1652-1660 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1781-1789 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 1936-1944 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 50-51 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 174-175 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 335-336 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T4 341-342 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T5 343-350 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T6 443-450 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T7 546-550 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T8 570-575 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T9 674-683 http://purl.obolibrary.org/obo/BFO_0000030 denotes objective
T10 1192-1193 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1239-1244 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T12 1272-1273 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1284-1289 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T14 1769-1776 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T15 1834-1840 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test's
T16 1877-1886 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 0-8 Disease denotes COVID-19 MESH:C000657245
13 244-263 Disease denotes respiratory illness MESH:D012140
14 377-383 Disease denotes deaths MESH:D003643
15 452-460 Disease denotes COVID-19 MESH:C000657245
16 559-569 Species denotes SARS-CoV-2 Tax:2697049
17 773-783 Species denotes SARS-CoV-2 Tax:2697049
18 910-914 Gene denotes SARI
19 970-978 Disease denotes COVID-19 MESH:C000657245
20 1583-1591 Disease denotes COVID-19 MESH:C000657245
21 1652-1660 Disease denotes COVID-19 MESH:C000657245
22 1781-1791 Species denotes SARS-CoV-2 Tax:2697049
23 1936-1944 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 244-263 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086

ENG_NER_NEL_CONSENSUS

Id Subject Object Predicate Lexical cue
T3 274-280 MESH:D001938 denotes Brazil
T10 452-460 DOID:0080600 denotes COVID-19
T12 477-483 MESH:D001938 denotes Brazil
T17 747-753 MESH:D001938 denotes Brazil
T2 238-243 HP:0011009 denotes acute
T20 970-978 DOID:0080600 denotes COVID-19
T27 1583-1591 DOID:0080600 denotes COVID-19
T29 1636-1642 HP:0012828 denotes severe
T30 1652-1660 DOID:0080600 denotes COVID-19
T34 1929-1935 HP:0012828 denotes severe
T35 1936-1944 DOID:0080600 denotes COVID-19
T37 1954-1960 MESH:D001938 denotes Brazil
T39 231-237 HP:0012828 denotes severe
T4 325-334 DOID:8469 denotes Influenza
T40 231-263 MESH:D045169 denotes severe acute respiratory illness
T43 325-336 MESH:D009980 denotes Influenza A
T45 341-342 MESH:D009981 denotes B
T47 546-569 MESH:D000086742 denotes test for the SARS-CoV-2
T49 596-617 MESH:D062665 denotes surveillance protocol
T50 739-743 MESH:D045169 denotes SARI
T51 265-269 MESH:D045169 denotes SARI
T53 773-783 MESH:D000086402 denotes SARS-CoV-2
T54 910-914 MESH:D004812 denotes SARI
T57 1228-1244 MESH:D000086742 denotes laboratory tests
T58 1284-1289 MESH:D014780 denotes virus
T59 1386-1390 MESH:D045169 denotes SARI
T65 1696-1708 MESH:D062665 denotes surveillance
T66 1804-1825 MESH:D062665 denotes surveillance protocol
T69 1769-1791 MESH:D000086742 denotes testing for SARS-CoV-2
T71 452-460 MESH:D000086382 denotes COVID-19
T72 1583-1591 MESH:D000086382 denotes COVID-19
T73 1652-1660 MESH:D000086382 denotes COVID-19
T74 1936-1944 MESH:D000086382 denotes COVID-19
T75 970-978 MESH:D000086382 denotes COVID-19
T76 1691-1695 MESH:D045169 denotes SARI
T9 443-450 MESH:D014780 denotes viruses
T77 492-496 MESH:D013995 denotes time
T78 1799-1803 MESH:D045169 denotes SARI
T79 1737-1743 MESH:D006262 denotes health

ENG_RE_CONSENSUS

Id Subject Object Predicate Lexical cue
T0 231-237 HP_0012828 denotes severe
T1 238-243 HP_0011009 denotes acute
T10 244-263 HP_0002795 denotes respiratory illness
T12 265-269 HP_0002795 denotes SARI
T2 325-334 DOID_8469 denotes Influenza
T3 452-460 HP_0002795 denotes COVID-19
T13 739-743 HP_0002795 denotes SARI
T14 910-914 HP_0002795 denotes SARI
T4 970-978 HP_0002795 denotes COVID-19
T15 1386-1390 HP_0002795 denotes SARI
T5 1583-1591 HP_0002795 denotes COVID-19
T6 1636-1642 HP_0012828 denotes severe
T7 1652-1660 HP_0002795 denotes COVID-19
T16 1691-1695 HP_0002795 denotes SARI
T17 1799-1803 HP_0002795 denotes SARI
T8 1929-1935 HP_0012828 denotes severe
T9 1936-1944 HP_0002795 denotes COVID-19
R7 T0 T14 effect severe,SARI
R8 T1 T14 effect acute,SARI
R9 T0 T15 effect severe,SARI
R10 T0 T17 effect severe,SARI
R11 T13 T1 effect SARI,acute
R12 T13 T1 effect SARI,acute
R13 T17 T1 effect SARI,acute
R16 T1 T15 effect acute,SARI
R17 T6 T7 effect severe,COVID-19
R18 T6 T5 effect severe,COVID-19
R19 T0 T16 effect severe,SARI
R20 T1 T16 effect acute,SARI
R21 T8 T9 effect severe,COVID-19
R1 T0 T10 effect severe,respiratory illness
R2 T1 T10 effect acute,respiratory illness
R3 T1 T12 effect acute,SARI
R4 T0 T12 effect severe,SARI
R5 T0 T13 effect severe,SARI
R6 T1 T13 effect acute,SARI
R14 T1 T14 effect acute,SARI
R15 T14 T1 effect SARI,acute

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-107 Sentence denotes COVID-19 and hospitalizations for SARI in Brazil: a comparison up to the 12th epidemiological week of 2020.
T2 108-210 Sentence denotes COVID-19 e hospitalizações por SRAG no Brasil: uma comparação até a 12ª semana epidemiológica de 2020.
T3 211-451 Sentence denotes Surveillance of the severe acute respiratory illness (SARI) in Brazil aims to characterize the circulation of the Influenza A and B viruses in hospitalized cases and deaths, having been expanded in 2012 to include other respiratory viruses.
T4 452-660 Sentence denotes COVID-19 was detected in Brazil for the time in the 9th epidemiological week of 2020, and the test for the SARS-CoV-2 virus was included in the surveillance protocol starting in the 12th epidemiological week.
T5 661-879 Sentence denotes This study's objective was to investigate the pattern of hospitalizations for SARI in Brazil since the entry of SARS-CoV-2, comparing the temporal and age profiles and laboratory results to the years 2010 through 2019.
T6 880-1086 Sentence denotes In 2020, hospitalizations for SARI, compiled from the date of the first confirmed case of COVID-19 up to the 12th week, exceeded the numbers observed during the same period in each of the previous 10 years.
T7 1087-1181 Sentence denotes The age bracket over 60 years was the most heavily affected, at higher than historical levels.
T8 1182-1330 Sentence denotes There was a considerable increase in negative laboratory tests, suggesting circulation of a different virus from those already present in the panel.
T9 1331-1751 Sentence denotes We concluded that the increase in hospitalizations for SARI, the lack of specific information on the etiological agent, and the predominance of cases among the elderly during the same period in which there was an increase in the number of new cases of COVID-19 are all consistent with the hypothesis that severe cases of COVID-19 are already being detected by SARI surveillance, placing an overload on the health system.
T10 1752-1961 Sentence denotes The inclusion of testing for SARS-CoV-2 in the SARI surveillance protocol and the test's effective nationwide deployment are extremely important for monitoring the evolution of severe COVID-19 cases in Brazil.