> top > docs > PubMed:32301155 > annotations

PubMed:32301155 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-OGER-BB

Id Subject Object Predicate Lexical cue
T1 0-8 SP_7 denotes COVID-19
T2 18-23 UBERON:0000062 denotes organ
T3 144-155 NCBITaxon:11118 denotes coronavirus
T4 170-178 SP_7 denotes COVID-19
T5 190-237 SP_7 denotes severe acute respiratory syndrome coronavirus 2
T6 203-214 UBERON:0001004 denotes respiratory
T7 239-249 SP_7 denotes SARS-CoV-2
T8 263-268 UBERON:0000062 denotes organ
T9 352-358 UBERON:0002113 denotes kidney
T10 368-373 UBERON:0002107 denotes liver
T11 387-392 UBERON:0000948 denotes heart
T12 428-436 SP_7 denotes COVID-19
T13 750-759 CHEBI:31781 denotes Lopinavir
T14 750-759 DG_23 denotes Lopinavir
T15 750-759 CHEBI:31781 denotes Lopinavir
T16 760-769 CHEBI:45409 denotes ritonavir
T17 760-769 DG_30 denotes ritonavir
T18 760-769 CHEBI:45409 denotes ritonavir
T19 795-813 CHEBI:5801 denotes hydroxychloroquine
T20 795-813 DG_20 denotes hydroxychloroquine
T21 795-813 CHEBI:5801 denotes hydroxychloroquine
T22 932-950 CHEBI:5801 denotes hydroxychloroquine
T23 932-950 DG_20 denotes hydroxychloroquine
T24 932-950 CHEBI:5801 denotes hydroxychloroquine
T25 975-987 PR:000024939 denotes interferon-β
T26 1157-1168 UBERON:0001004 denotes respiratory
T27 1282-1300 PR:000005897 denotes C-reactive protein
T28 1457-1467 SP_7 denotes SARS-CoV-2

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 12-23 Body_part denotes solid organ http://purl.org/sig/ont/fma/fma55670
T2 257-268 Body_part denotes solid organ http://purl.org/sig/ont/fma/fma55670
T3 352-358 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T4 368-373 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T5 387-392 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T6 1293-1300 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 18-23 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T2 263-268 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T3 352-358 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T4 368-373 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T5 387-392 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 0-8 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 144-168 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T3 170-178 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 190-237 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T5 190-223 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T6 239-247 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 428-436 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 1157-1176 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T9 1457-1465 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 1468-1477 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 18-23 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T2 47-48 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T3 263-268 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T4 344-346 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T5 352-358 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T6 352-358 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T7 352-358 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T8 368-373 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T9 368-373 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T10 387-392 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T11 387-392 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T12 387-392 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T13 387-392 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T14 458-459 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 1048-1050 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T16 1059-1060 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1081-1083 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T18 1250-1254 http://purl.obolibrary.org/obo/CLO_0001001 denotes 8/13
T19 1478-1481 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T20 1482-1483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 750-759 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T2 760-769 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T3 795-813 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T4 904-913 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T5 932-950 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T6 975-985 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T7 1293-1300 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 600-605 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T2 1145-1176 Phenotype denotes progressive respiratory failure http://purl.obolibrary.org/obo/HP_0002093

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 0-8 Disease denotes COVID-19 MESH:C000657245
16 144-168 Disease denotes coronavirus disease 2019 MESH:C000657245
17 170-178 Disease denotes COVID-19 MESH:C000657245
18 190-237 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
19 239-249 Species denotes SARS-CoV-2 Tax:2697049
20 428-436 Disease denotes COVID-19 MESH:C000657245
21 600-605 Disease denotes Fever MESH:D005334
22 750-769 Chemical denotes Lopinavir/ritonavir MESH:C558899
23 795-813 Chemical denotes hydroxychloroquine MESH:D006886
24 836-844 Species denotes patients Tax:9606
25 932-950 Chemical denotes hydroxychloroquine MESH:D006886
26 975-987 Gene denotes interferon-β Gene:3456
27 1157-1176 Disease denotes respiratory failure MESH:D012131
28 1282-1300 Gene denotes C-reactive protein Gene:1401
29 1457-1477 Disease denotes SARS-CoV-2 infection MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-46 Sentence denotes COVID-19 in solid organ transplant recipients:
T2 47-86 Sentence denotes A single-center case series from Spain.
T3 87-301 Sentence denotes The clinical characteristics, management, and outcome of coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) after solid organ transplant (SOT) remain unknown.
T4 302-491 Sentence denotes We report our preliminary experience with 18 SOT (kidney [44.4%], liver [33.3%], and heart [22.2%]) recipients diagnosed with COVID-19 by March 23, 2020 at a tertiary-care center at Madrid.
T5 492-599 Sentence denotes Median age at diagnosis was 71.0 ± 12.8 years, and the median interval since transplantation was 9.3 years.
T6 600-749 Sentence denotes Fever (83.3%) and radiographic abnormalities in form of unilateral or bilateral/multifocal consolidations (72.2%) were the most common presentations.
T7 750-897 Sentence denotes Lopinavir/ritonavir (usually associated with hydroxychloroquine) was used in 50.0% of patients and had to be prematurely discontinued in 2 of them.
T8 898-996 Sentence denotes Other antiviral regimens included hydroxychloroquine monotherapy (27.8%) and interferon-β (16.7%).
T9 997-1052 Sentence denotes As of April 4, the case-fatality rate was 27.8% (5/18).
T10 1053-1281 Sentence denotes After a median follow-up of 18 days from symptom onset, 30.8% (4/13) of survivors developed progressive respiratory failure, 7.7% (1/13) showed stable clinical condition or improvement, and 61.5% (8/13) had been discharged home.
T11 1282-1405 Sentence denotes C-reactive protein levels at various points were significantly higher among recipients who experienced unfavorable outcome.
T12 1406-1516 Sentence denotes In conclusion, this frontline report suggests that SARS-CoV-2 infection has a severe course in SOT recipients.

hydroxychloroquine

Id Subject Object Predicate Lexical cue hp_id
T1 600-605 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T2 1145-1176 Phenotype denotes progressive respiratory failure http://purl.obolibrary.org/obo/HP_0002093